FvH4_2g04010

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000109
Physical Location & Seq
Reverse (-)
3152365 .. 3153641
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04010.t1

Sequence Viewer

Length: 564 bp
ATGATCGACGAGGTTTCACGATTACCAATGGTGCTCGCTATATTGGAGAGCGGTCGAGTGTCCTTTGGAGCTGTCGGTGCGGCGGCTTTCTCTAGTCATTCGTATGCGGTGGGCAGACTTATGTCCTCCAAGAAGAAAATTGTCCCAAAGCTTTCATGGCAACAATGGTCACACTTTTGGGATCTTAAGGGGAAGCTGCAGATCAGGGATCAAGGGGAGCCTCTGTATGACGGCAGGAAGAATGCGACGCTGGTTCCGATCAGATCCATCTTGGCTTGGGTTGAAGTTTTCGGCCTCCCACCAGATCTCATCCTGTATATGGTGGGTGCAACTCTTGGCCGGATCATCAACCATGATAACCCGAACCTTCTCTTAGGTGCGCGAGCTAGGGTTCGAATGGAGCATAGCTTGGACTCTCCGGTGAAGCAAGCGTATCCTCATATGCGCTTTGATTTCAAGGAAGGTATGAATTTGACCTTTGTGATGTTAACCTTCAAATACGAAAGAGTTTGTGGGTTATGCAGGATCTATGGGTTGTTGGAACACAAGGCTGATGGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

9.45

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 51
AccII CGCG 1 cut(s) 382
AciI CCGC 4 cut(s) 51, 80, 83, 107
AclWI GGATC 5 cut(s) 189, 216, 258, 350, 533
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 319
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 3 cut(s) 284, 457, 496
AluBI AGCT 5 cut(s) 71, 151, 196, 386, 408
AluI AGCT 5 cut(s) 71, 151, 196, 386, 408
Alw21I GWGCWC 1 cut(s) 36
AlwI GGATC 5 cut(s) 189, 216, 258, 350, 533
AoxI GGCC 2 cut(s) 292, 337
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 469
AspLEI GCGC 2 cut(s) 382, 447
AsuHPI GGTGA 1 cut(s) 433
AsuII TTCGAA 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 183
BccI CCATC 2 cut(s) 275, 548
BceAI ACGGC 1 cut(s) 247
BciVI GTATCC 1 cut(s) 444
BfaI CTAG 2 cut(s) 93, 387
BfmI CTRYAG 1 cut(s) 197
BfrI CTTAAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 444
BglII AGATCT 1 cut(s) 304
BisI GCNGC 3 cut(s) 81, 84, 197
BlsI GCNGC 3 cut(s) 82, 85, 198
BmiI GGNNCC 2 cut(s) 219, 255
BoxI GACNNNNGTC 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 394
BsaWI WCCGGW 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 319
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 382
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 294, 339
BsiEI CGRYCG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 340, 419
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 294, 339
Bsp119I TTCGAA 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
BspACI CCGC 4 cut(s) 51, 80, 83, 107
BspANI GGCC 2 cut(s) 294, 339
BspFNI CGCG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 219, 255
BspMAI CTGCAG 1 cut(s) 201
BspPI GGATC 5 cut(s) 189, 216, 258, 350, 533
BspT104I TTCGAA 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 51
BssMI GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
BstAFI CTTAAG 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 3 cut(s) 36, 384, 429
BstDEI CTNAG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 382
BstHHI GCGC 2 cut(s) 382, 447
BstKTI GATC 9 cut(s) 6, 184, 204, 211, 261, 266, 307, 345, 528
BstMBI GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 77, 157
BstPAI GACNNNNGTC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 4 cut(s) 181, 263, 304, 525
BstYI RGATCY 4 cut(s) 181, 263, 304, 525
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 2 cut(s) 294, 339
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 36, 384, 429
CfoI GCGC 2 cut(s) 382, 447
CseI GACGC 1 cut(s) 256
CviAII CATG 2 cut(s) 156, 353
DdeI CTNAG 1 cut(s) 373
DpnI GATC 9 cut(s) 5, 183, 203, 210, 260, 265, 306, 344, 527
DpnII GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
EaeI YGGCCR 1 cut(s) 337
FaeI CATG 2 cut(s) 159, 356
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 155, 352
FauNDI CATATG 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 81, 84, 197
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 3 cut(s) 81, 84, 197
FspBI CTAG 2 cut(s) 93, 387
GlaI GCGC 2 cut(s) 381, 446
GluI GCNGC 3 cut(s) 81, 84, 197
HaeIII GGCC 2 cut(s) 294, 339
HapII CCGG 2 cut(s) 340, 419
HgaI GACGC 1 cut(s) 256
HhaI GCGC 2 cut(s) 382, 447
Hin1II CATG 2 cut(s) 159, 356
Hin6I GCGC 2 cut(s) 380, 445
HinP1I GCGC 2 cut(s) 380, 445
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 1 cut(s) 413
HpaI GTTAAC 1 cut(s) 489
HpaII CCGG 2 cut(s) 340, 419
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 2 cut(s) 258, 263
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 489
Hpy99I CGWCG 2 cut(s) 11, 250
HpyAV CCTTC 3 cut(s) 377, 455, 502
HpyCH4V TGCA 3 cut(s) 199, 329, 522
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 157
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 2 cut(s) 159, 356
HspAI GCGC 2 cut(s) 380, 445
KspAI GTTAAC 1 cut(s) 489
Kzo9I GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
LmnI GCTCC 3 cut(s) 68, 217, 400
LpnPI CCDG 8 cut(s) 190, 220, 236, 315, 326, 353, 432, 508
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 2 cut(s) 93, 387
MaeIII GTNAC 1 cut(s) 168
MalI GATC 9 cut(s) 5, 183, 203, 210, 260, 265, 306, 344, 527
MbiI CCGCTC 1 cut(s) 51
MboI GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
MboII GAAGA 2 cut(s) 145, 250
MflI RGATCY 4 cut(s) 181, 263, 304, 525
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 138, 469
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 5 cut(s) 4, 136, 231, 305, 447
MseI TTAA 2 cut(s) 186, 488
MslI CAYNNNNRTG 1 cut(s) 102
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 2 cut(s) 340, 419
Mva1269I GAATGC 1 cut(s) 247
MvnI CGCG 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 77, 157
NdeI CATATG 1 cut(s) 441
NdeII GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
NlaIII CATG 2 cut(s) 159, 356
NlaIV GGNNCC 2 cut(s) 219, 255
NmuCI GTSAC 1 cut(s) 168
NspV TTCGAA 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 254
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 82, 85, 198
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
PshAI GACNNNNGTC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 219, 255
PstI CTGCAG 1 cut(s) 201
PsuI RGATCY 4 cut(s) 181, 263, 304, 525
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 2 cut(s) 186, 488
SatI GCNGC 3 cut(s) 81, 84, 197
Sau3AI GATC 9 cut(s) 3, 181, 201, 208, 258, 263, 304, 342, 525
SchI GAGTC 1 cut(s) 407
SduI GDGCHC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 138, 469
SsiI CCGC 4 cut(s) 51, 80, 83, 107
SspMI CTAG 2 cut(s) 93, 387
TaqI TCGA 3 cut(s) 6, 55, 394
TasI AATT 2 cut(s) 138, 469
TauI GCSGC 2 cut(s) 83, 86
Tru1I TTAA 2 cut(s) 186, 488
Tru9I TTAA 2 cut(s) 186, 488
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 144, 482
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XspI CTAG 2 cut(s) 93, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.