Rh2BG629800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000109
Physical Location & Seq
Reverse (-)
85158351 .. 85159121
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG629800.1

Sequence Viewer

Length: 771 bp
ATGTCTGGAACCGACATCGTGGCTGGGGCGCAGCATCAAGGGGGGCGTTTAGAGGTGGGGGGCTCTAACCCTAGGTCGAACCTGCCCCCTGTGTTTGATTTTGTTGGGTTGGGTTCAACGTCGAGGCCAACGTTTCAGGCTACTGCAGGTTTGTCTATGAGCAGTAGCGTGGCCACTCCTACTGTAAAGCCCTCCCATTCTAGTTTGTCTCTCTCTACACCCGGCCACGCTACAGAGGAGCTAGCTAAGCAAGTGGCGCTCCCGGTTATCCCTTCCCCACACCGGCAACCGGTGGTCAATGGGACTAGAAGGAAGGCTGAGGCTCGGGAATTGGTGACGTACAGTAAGAAAGCTCAAGCTGTAGTTCCCGTTCCCATAACTGAACCTTTGAGCATTGGTTTTGTCCCTGAGTTAGCTCTACCTCACCAGGCGGGTATCTTGATTGTCTCTCCCCCGAAGAGGCGCAAGGTGGGTAAGCCTGTAAGGGCAAAGAATAAGCCTAGGGTGGAGGAGATCTACCCTTGGAAGCTAGGGACTGCCTCAACCAAGAAAGTTAAGAAGCGTCAATTTCATATTGCCAAGAAAGCTTTGGTTATGGAGGAAGATCCGGCAGTGGGGGAGGTTCCTACGGGGAAGGCTGTTGTGGAGGAGATTTCTCCAATGGTAACAGTTGAATCTGAGAAGACTACGGTGGTGGAGGAGACCGTCGTGGGGGAGGCTACTCCTTTGAGTGTGGTAACTATGGATCCTGGGGATGCCCCCTCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.03

Weight (kDa)

9.6

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 90, 137
AciI CCGC 1 cut(s) 431
AclI AACGTT 1 cut(s) 131
AclWI GGATC 3 cut(s) 599, 740, 753
AcoI YGGCCR 2 cut(s) 171, 223
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 5 cut(s) 282, 289, 459, 614, 711
AgeI ACCGGT 1 cut(s) 289
AgsI TTSAA 2 cut(s) 117, 674
AjnI CCWGG 2 cut(s) 426, 748
AluBI AGCT 7 cut(s) 241, 245, 353, 359, 416, 529, 587
AluI AGCT 7 cut(s) 241, 245, 353, 359, 416, 529, 587
Alw26I GTCTC 3 cut(s) 213, 451, 695
AlwI GGATC 3 cut(s) 599, 740, 753
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 3 cut(s) 125, 171, 223
ApeKI GCWGC 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 289
AspA2I CCTAGG 2 cut(s) 71, 500
AspLEI GCGC 3 cut(s) 31, 259, 465
AsuC2I CCSGG 2 cut(s) 222, 263
AsuHPI GGTGA 2 cut(s) 346, 416
AsuNHI GCTAGC 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 324
AvrII CCTAGG 2 cut(s) 71, 500
BalI TGGCCA 1 cut(s) 173
BamHI GGATCC 1 cut(s) 745
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 689
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 43
BciT130I CCWGG 2 cut(s) 428, 750
BcnI CCSGG 2 cut(s) 222, 263
BcoDI GTCTC 3 cut(s) 213, 451, 695
BfaI CTAG 6 cut(s) 72, 201, 242, 306, 501, 530
BfmI CTRYAG 3 cut(s) 144, 231, 360
BfoI RGCGCY 1 cut(s) 260
BfuAI ACCTGC 2 cut(s) 90, 137
BglII AGATCT 1 cut(s) 513
BisI GCNGC 1 cut(s) 32
BlnI CCTAGG 2 cut(s) 71, 500
BlpI GCTNAGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 4 cut(s) 222, 263, 428, 750
BmeT110I CYCGRG 1 cut(s) 324
BmiI GGNNCC 3 cut(s) 10, 624, 747
BmrFI CCNGG 4 cut(s) 222, 263, 428, 750
BmsI GCATC 2 cut(s) 43, 745
BmtI GCTAGC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 689
Bpu10I CCTNAGC 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 2 cut(s) 222, 263
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 71, 500, 521, 749
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 289, 459, 614, 711
Bse118I RCCGGY 2 cut(s) 282, 289
BseBI CCWGG 2 cut(s) 428, 750
BseDI CCNNGG 4 cut(s) 71, 500, 521, 749
BseGI GGATG 1 cut(s) 760
BseLI CCNNNNNNNGG 5 cut(s) 282, 289, 459, 614, 711
BseMII CTCAG 3 cut(s) 309, 399, 669
BseRI GAGGAG 4 cut(s) 251, 524, 662, 713
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 23
BshFI GGCC 3 cut(s) 127, 173, 225
BshTI ACCGGT 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 5 cut(s) 222, 263, 283, 290, 608
BslFI GGGAC 3 cut(s) 316, 389, 547
BslI CCNNNNNNNGG 5 cut(s) 282, 289, 459, 614, 711
BsmAI GTCTC 3 cut(s) 213, 451, 695
BsmFI GGGAC 3 cut(s) 316, 389, 547
BsnI GGCC 3 cut(s) 127, 173, 225
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 513, 604, 745
Bsp1720I GCTNAGC 1 cut(s) 246
BspACI CCGC 1 cut(s) 431
BspANI GGCC 3 cut(s) 127, 173, 225
BspCNI CTCAG 3 cut(s) 310, 400, 670
BspLI GGNNCC 3 cut(s) 10, 624, 747
BspMAI CTGCAG 1 cut(s) 148
BspMI ACCTGC 2 cut(s) 90, 137
BspOI GCTAGC 1 cut(s) 245
BspPI GGATC 3 cut(s) 599, 740, 753
BspTNI GGTCTC 1 cut(s) 695
BsrFI RCCGGY 2 cut(s) 282, 289
BssAI RCCGGY 2 cut(s) 282, 289
BssECI CCNNGG 4 cut(s) 71, 500, 521, 749
BssMI GATC 3 cut(s) 513, 604, 745
BssT1I CCWWGG 3 cut(s) 71, 500, 521
Bst2UI CCWGG 2 cut(s) 428, 750
Bst4CI ACNGT 5 cut(s) 184, 344, 670, 691, 706
Bst6I CTCTTC 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 246, 318, 408, 678
BstF5I GGATG 1 cut(s) 760
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 3 cut(s) 31, 259, 465
BstKTI GATC 3 cut(s) 516, 607, 748
BstMAI GTCTC 3 cut(s) 213, 451, 695
BstMBI GATC 3 cut(s) 513, 604, 745
BstMWI GCNNNNNNNGC 4 cut(s) 247, 256, 584, 764
BstNI CCWGG 2 cut(s) 428, 750
BstSCI CCNGG 4 cut(s) 220, 261, 426, 748
BstSFI CTRYAG 3 cut(s) 144, 231, 360
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 3 cut(s) 513, 604, 745
BstYI RGATCY 3 cut(s) 513, 604, 745
BsuRI GGCC 3 cut(s) 127, 173, 225
BtsCI GGATG 1 cut(s) 760
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 618
BveI ACCTGC 2 cut(s) 90, 137
Cac8I GCNNGC 1 cut(s) 243
CfoI GCGC 3 cut(s) 31, 259, 465
Cfr10I RCCGGY 2 cut(s) 282, 289
CseI GACGC 1 cut(s) 551
Csp6I GTAC 1 cut(s) 340
CspAI ACCGGT 1 cut(s) 289
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 4 cut(s) 246, 318, 408, 678
DpnI GATC 3 cut(s) 515, 606, 747
DpnII GATC 3 cut(s) 513, 604, 745
EaeI YGGCCR 2 cut(s) 171, 223
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco130I CCWWGG 3 cut(s) 71, 500, 521
Eco24I GRGCYC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 695
Eco88I CYCGRG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 426, 748
EcoT14I CCWWGG 3 cut(s) 71, 500, 521
EcoT38I GRGCYC 1 cut(s) 65
ErhI CCWWGG 3 cut(s) 71, 500, 521
FaiI YATR 5 cut(s) 158, 377, 573, 596, 743
FaqI GGGAC 3 cut(s) 316, 389, 547
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 767
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 6 cut(s) 72, 201, 242, 306, 501, 530
GlaI GCGC 3 cut(s) 30, 258, 464
GluI GCNGC 1 cut(s) 32
GsaI CCCAGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 3 cut(s) 127, 173, 225
HapII CCGG 5 cut(s) 222, 263, 283, 290, 608
HgaI GACGC 1 cut(s) 551
HhaI GCGC 3 cut(s) 31, 259, 465
Hin6I GCGC 3 cut(s) 29, 257, 463
HinP1I GCGC 3 cut(s) 29, 257, 463
HindIII AAGCTT 1 cut(s) 585
HinfI GANTC 1 cut(s) 674
HpaII CCGG 5 cut(s) 222, 263, 283, 290, 608
HphI GGTGA 2 cut(s) 346, 416
Hpy188I TCNGA 1 cut(s) 679
Hpy188III TCNNGA 3 cut(s) 6, 326, 439
Hpy99I CGWCG 2 cut(s) 124, 710
HpyAV CCTTC 4 cut(s) 282, 303, 307, 628
HpyCH4III ACNGT 5 cut(s) 184, 344, 670, 691, 706
HpyCH4IV ACGT 3 cut(s) 119, 131, 338
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 4 cut(s) 247, 256, 584, 764
HpyF3I CTNAG 4 cut(s) 246, 318, 408, 678
HpySE526I ACGT 3 cut(s) 119, 131, 338
HspAI GCGC 3 cut(s) 29, 257, 463
Kzo9I GATC 3 cut(s) 513, 604, 745
LmnI GCTCC 2 cut(s) 238, 264
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 43, 745
MaeI CTAG 6 cut(s) 72, 201, 242, 306, 501, 530
MaeII ACGT 3 cut(s) 119, 131, 338
MaeIII GTNAC 3 cut(s) 334, 664, 736
MalI GATC 3 cut(s) 515, 606, 747
MboI GATC 3 cut(s) 513, 604, 745
MboII GAAGA 3 cut(s) 469, 614, 694
MflI RGATCY 3 cut(s) 513, 604, 745
MhlI GDGCHC 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 2 cut(s) 329, 566
MluNI TGGCCA 1 cut(s) 173
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 1 cut(s) 555
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 5 cut(s) 222, 263, 283, 290, 608
MspR9I CCNGG 4 cut(s) 222, 263, 428, 750
MvaI CCWGG 2 cut(s) 428, 750
MwoI GCNNNNNNNGC 4 cut(s) 247, 256, 584, 764
NciI CCSGG 2 cut(s) 222, 263
NdeII GATC 3 cut(s) 513, 604, 745
NheI GCTAGC 1 cut(s) 241
NlaIV GGNNCC 3 cut(s) 10, 624, 747
NmuCI GTSAC 1 cut(s) 334
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 1 cut(s) 674
PinAI ACCGGT 1 cut(s) 289
PkrI GCNGC 1 cut(s) 33
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 2 cut(s) 426, 748
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 2 cut(s) 426, 748
PspN4I GGNNCC 3 cut(s) 10, 624, 747
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 3 cut(s) 513, 604, 745
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 3 cut(s) 513, 604, 745
ScrFI CCNGG 4 cut(s) 222, 263, 428, 750
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 2 cut(s) 43, 745
SfcI CTRYAG 3 cut(s) 144, 231, 360
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 2 cut(s) 329, 566
SsiI CCGC 1 cut(s) 431
SspMI CTAG 6 cut(s) 72, 201, 242, 306, 501, 530
StyD4I CCNGG 4 cut(s) 220, 261, 426, 748
StyI CCWWGG 3 cut(s) 71, 500, 521
TaaI ACNGT 5 cut(s) 184, 344, 670, 691, 706
TaiI ACGT 3 cut(s) 122, 134, 341
TaqI TCGA 2 cut(s) 77, 122
TasI AATT 2 cut(s) 329, 566
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 618
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 560
TspRI CASTG 1 cut(s) 618
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmaJI CCTAGG 2 cut(s) 71, 500
XspI CTAG 6 cut(s) 72, 201, 242, 306, 501, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.