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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 181 |
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AclWI | GGATC | 2 cut(s) | 239, 252 |
| AcyI | GRCGYC | 1 cut(s) | 178 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 296 |
| AflIII | ACRYGT | 1 cut(s) | 357 |
| AgsI | TTSAA | 1 cut(s) | 134 |
| AjnI | CCWGG | 1 cut(s) | 184 |
| AluBI | AGCT | 3 cut(s) | 8, 232, 309 |
| AluI | AGCT | 3 cut(s) | 8, 232, 309 |
| AlwI | GGATC | 2 cut(s) | 239, 252 |
| Ama87I | CYCGRG | 1 cut(s) | 310 |
| AoxI | GGCC | 3 cut(s) | 48, 57, 144 |
| ApeKI | GCWGC | 3 cut(s) | 8, 306, 320 |
| AspS9I | GGNCC | 3 cut(s) | 19, 58, 145 |
| AsuHPI | GGTGA | 1 cut(s) | 311 |
| AvaI | CYCGRG | 1 cut(s) | 310 |
| AvaII | GGWCC | 1 cut(s) | 19 |
| AxyI | CCTNAGG | 1 cut(s) | 105 |
| BaeGI | GKGCMC | 1 cut(s) | 409 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BbsI | GAAGAC | 1 cut(s) | 92 |
| BbvI | GCAGC | 2 cut(s) | 307, 318 |
| BccI | CCATC | 1 cut(s) | 31 |
| BceAI | ACGGC | 2 cut(s) | 63, 72 |
| BciT130I | CCWGG | 1 cut(s) | 186 |
| BfmI | CTRYAG | 2 cut(s) | 12, 321 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 56 |
| BisI | GCNGC | 3 cut(s) | 9, 307, 321 |
| BlsI | GCNGC | 3 cut(s) | 10, 308, 322 |
| Bme1390I | CCNGG | 1 cut(s) | 186 |
| Bme18I | GGWCC | 1 cut(s) | 19 |
| BmeT110I | CYCGRG | 1 cut(s) | 310 |
| BmgT120I | GGNCC | 3 cut(s) | 19, 58, 145 |
| BmiI | GGNNCC | 4 cut(s) | 21, 102, 246, 406 |
| BmrFI | CCNGG | 1 cut(s) | 186 |
| BpiI | GAAGAC | 1 cut(s) | 92 |
| BsaHI | GRCGYC | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 3 cut(s) | 185, 210, 399 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 296 |
| Bse21I | CCTNAGG | 1 cut(s) | 105 |
| BseBI | CCWGG | 1 cut(s) | 186 |
| BseDI | CCNNGG | 3 cut(s) | 185, 210, 399 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BseMII | CTCAG | 5 cut(s) | 43, 119, 231, 369, 375 |
| BseRI | GAGGAG | 2 cut(s) | 110, 280 |
| BseSI | GKGCMC | 1 cut(s) | 409 |
| BseXI | GCAGC | 2 cut(s) | 307, 318 |
| BshFI | GGCC | 3 cut(s) | 50, 59, 146 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 310 |
| BslFI | GGGAC | 2 cut(s) | 5, 189 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 296 |
| BsmFI | GGGAC | 2 cut(s) | 5, 189 |
| BsmI | GAATGC | 1 cut(s) | 395 |
| BsnI | GGCC | 3 cut(s) | 50, 59, 146 |
| BsoBI | CYCGRG | 1 cut(s) | 310 |
| Bsp1286I | GDGCHC | 1 cut(s) | 409 |
| Bsp143I | GATC | 2 cut(s) | 121, 244 |
| Bsp19I | CCATGG | 2 cut(s) | 210, 399 |
| BspANI | GGCC | 3 cut(s) | 50, 59, 146 |
| BspCNI | CTCAG | 5 cut(s) | 42, 118, 232, 370, 376 |
| BspLI | GGNNCC | 4 cut(s) | 21, 102, 246, 406 |
| BspMAI | CTGCAG | 1 cut(s) | 325 |
| BspPI | GGATC | 2 cut(s) | 239, 252 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BssECI | CCNNGG | 3 cut(s) | 185, 210, 399 |
| BssMI | GATC | 2 cut(s) | 121, 244 |
| BssNI | GRCGYC | 1 cut(s) | 178 |
| BssT1I | CCWWGG | 2 cut(s) | 210, 399 |
| Bst2UI | CCWGG | 1 cut(s) | 186 |
| Bst4CI | ACNGT | 1 cut(s) | 91 |
| Bst6I | CTCTTC | 2 cut(s) | 35, 257 |
| BstACI | GRCGYC | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 7 cut(s) | 29, 75, 105, 225, 240, 378, 384 |
| BstDSI | CCRYGG | 2 cut(s) | 210, 399 |
| BstKTI | GATC | 2 cut(s) | 124, 247 |
| BstMBI | GATC | 2 cut(s) | 121, 244 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 56 |
| BstNI | CCWGG | 1 cut(s) | 186 |
| BstNSI | RCATGY | 1 cut(s) | 361 |
| BstSCI | CCNGG | 1 cut(s) | 184 |
| BstSFI | CTRYAG | 2 cut(s) | 12, 321 |
| BstSLI | GKGCMC | 1 cut(s) | 409 |
| BstV1I | GCAGC | 2 cut(s) | 307, 318 |
| BstV2I | GAAGAC | 1 cut(s) | 92 |
| BstX2I | RGATCY | 1 cut(s) | 244 |
| BstYI | RGATCY | 1 cut(s) | 244 |
| Bsu36I | CCTNAGG | 1 cut(s) | 105 |
| BsuRI | GGCC | 3 cut(s) | 50, 59, 146 |
| BtgI | CCRYGG | 2 cut(s) | 210, 399 |
| BtsI | GCAGTG | 1 cut(s) | 285 |
| BtsIMutI | CAGTG | 2 cut(s) | 37, 285 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 3 cut(s) | 19, 58, 145 |
| CviAII | CATG | 4 cut(s) | 64, 211, 358, 400 |
| CviJI | RGCY | 7 cut(s) | 8, 50, 59, 146, 232, 309, 320 |
| CviKI_1 | RGCY | 7 cut(s) | 8, 50, 59, 146, 232, 309, 320 |
| DdeI | CTNAG | 7 cut(s) | 29, 75, 105, 225, 240, 378, 384 |
| DpnI | GATC | 2 cut(s) | 123, 246 |
| DpnII | GATC | 2 cut(s) | 121, 244 |
| Eam1104I | CTCTTC | 2 cut(s) | 35, 257 |
| EarI | CTCTTC | 2 cut(s) | 35, 257 |
| Eco130I | CCWWGG | 2 cut(s) | 210, 399 |
| Eco47I | GGWCC | 1 cut(s) | 19 |
| Eco81I | CCTNAGG | 1 cut(s) | 105 |
| Eco88I | CYCGRG | 1 cut(s) | 310 |
| EcoRII | CCWGG | 1 cut(s) | 184 |
| EcoT14I | CCWWGG | 2 cut(s) | 210, 399 |
| ErhI | CCWWGG | 2 cut(s) | 210, 399 |
| FaeI | CATG | 4 cut(s) | 67, 214, 361, 403 |
| FaiI | YATR | 5 cut(s) | 65, 212, 359, 366, 401 |
| FaqI | GGGAC | 2 cut(s) | 5, 189 |
| FatI | CATG | 4 cut(s) | 63, 210, 357, 399 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 307, 321 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 307, 321 |
| GluI | GCNGC | 3 cut(s) | 9, 307, 321 |
| HaeIII | GGCC | 3 cut(s) | 50, 59, 146 |
| Hin1I | GRCGYC | 1 cut(s) | 178 |
| Hin1II | CATG | 4 cut(s) | 67, 214, 361, 403 |
| HinfI | GANTC | 1 cut(s) | 380 |
| HphI | GGTGA | 1 cut(s) | 311 |
| Hpy166II | GTNNAC | 1 cut(s) | 355 |
| Hpy188I | TCNGA | 4 cut(s) | 219, 241, 379, 385 |
| Hpy8I | GTNNAC | 1 cut(s) | 355 |
| HpyAV | CCTTC | 3 cut(s) | 252, 296, 300 |
| HpyCH4III | ACNGT | 1 cut(s) | 91 |
| HpyCH4IV | ACGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 67, 323, 393 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 56 |
| HpyF3I | CTNAG | 7 cut(s) | 29, 75, 105, 225, 240, 378, 384 |
| HpySE526I | ACGT | 1 cut(s) | 178 |
| Hsp92I | GRCGYC | 1 cut(s) | 178 |
| Hsp92II | CATG | 4 cut(s) | 67, 214, 361, 403 |
| Kzo9I | GATC | 2 cut(s) | 121, 244 |
| LpnPI | CCDG | 6 cut(s) | 92, 150, 171, 198, 282, 309 |
| Lsp1109I | GCAGC | 2 cut(s) | 307, 318 |
| MaeII | ACGT | 1 cut(s) | 178 |
| MalI | GATC | 2 cut(s) | 123, 246 |
| MboI | GATC | 2 cut(s) | 121, 244 |
| MboII | GAAGA | 4 cut(s) | 49, 52, 97, 274 |
| MflI | RGATCY | 1 cut(s) | 244 |
| MhlI | GDGCHC | 1 cut(s) | 409 |
| MluCI | AATT | 2 cut(s) | 140, 170 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MseI | TTAA | 1 cut(s) | 273 |
| MspR9I | CCNGG | 1 cut(s) | 186 |
| Mva1269I | GAATGC | 1 cut(s) | 395 |
| MvaI | CCWGG | 1 cut(s) | 186 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 56 |
| NcoI | CCATGG | 2 cut(s) | 210, 399 |
| NdeII | GATC | 2 cut(s) | 121, 244 |
| NlaIII | CATG | 4 cut(s) | 67, 214, 361, 403 |
| NlaIV | GGNNCC | 4 cut(s) | 21, 102, 246, 406 |
| NspI | RCATGY | 1 cut(s) | 361 |
| PciI | ACATGT | 1 cut(s) | 357 |
| PctI | GAATGC | 1 cut(s) | 395 |
| PkrI | GCNGC | 3 cut(s) | 10, 308, 322 |
| PleI | GAGTC | 1 cut(s) | 388 |
| PpsI | GAGTC | 1 cut(s) | 388 |
| PscI | ACATGT | 1 cut(s) | 357 |
| Psp6I | CCWGG | 1 cut(s) | 184 |
| PspGI | CCWGG | 1 cut(s) | 184 |
| PspN4I | GGNNCC | 4 cut(s) | 21, 102, 246, 406 |
| PspPI | GGNCC | 3 cut(s) | 19, 58, 145 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 37, 69 |
| PstI | CTGCAG | 1 cut(s) | 325 |
| PsuI | RGATCY | 1 cut(s) | 244 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| SatI | GCNGC | 3 cut(s) | 9, 307, 321 |
| Sau3AI | GATC | 2 cut(s) | 121, 244 |
| Sau96I | GGNCC | 3 cut(s) | 19, 58, 145 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 1 cut(s) | 186 |
| SduI | GDGCHC | 1 cut(s) | 409 |
| SfcI | CTRYAG | 2 cut(s) | 12, 321 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 56 |
| SinI | GGWCC | 1 cut(s) | 19 |
| Sse9I | AATT | 2 cut(s) | 140, 170 |
| SspI | AATATT | 1 cut(s) | 71 |
| StyD4I | CCNGG | 1 cut(s) | 184 |
| StyI | CCWWGG | 2 cut(s) | 210, 399 |
| TaaI | ACNGT | 1 cut(s) | 91 |
| TaiI | ACGT | 1 cut(s) | 181 |
| TaqI | TCGA | 2 cut(s) | 256, 411 |
| TasI | AATT | 2 cut(s) | 140, 170 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 2 cut(s) | 37, 285 |
| TseI | GCWGC | 3 cut(s) | 8, 306, 320 |
| TspRI | CASTG | 2 cut(s) | 37, 285 |
| VpaK11BI | GGWCC | 1 cut(s) | 19 |
| XceI | RCATGY | 1 cut(s) | 361 |
| ZraI | GACGTC | 1 cut(s) | 179 |