RLG00000018171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000109
Physical Location & Seq
Reverse (-)
26348852 .. 26350538
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018171

Sequence Viewer

Length: 675 bp
ATGGCATTTTCTGGGCTGGAAGACAAAACTGTTGTGTTAGGCATTATCTTGGGTAGGACCTCCTTTGGGCCGGTGGGCGCAACGGTGGTGTCGTCTCACCACTTTGCCATTGGGGGCCTGATGTCTGTTACGGGAAAACGGCGCGAAAATCCAAAGGCATTCATGGGCACTATAGCCTTGGTTTGGGGGCACGGAAACCAGTTAAGGATTCAAGAACAGAGAGACCGCTATATCTTTCAGTTTTCGATGGTAGAGGATTGCGAATTTGTTGAAACAATGAGAGTGGGGACGAACCCTAACCCTAACCCTAGGGCTTTTGATCGGCCTTCCTCTTTTGCAGCTTCTAGTTTGGGCTCCAGGGCTTCAATCCCCAATCCTTTTGCGTCACAGCCACGTACTCTAACGTTGTTGACACTACCTGGCAAGCTCGTAGCCAACTTAGAGGTGCAGTTTGCATGTTTTCAGCAACATGGGCCTGCCTTGCCGAAGGTACCAGTAACTCCACCTCCTCCAGTAGTTGCAGCCATCACAGTCCAACTAGGGTTTGAACCCGAGTTGGCTCTGAAGTGTGCAAATGGTGTCATCTTGGTGTCCCCTGCCAAGAAAGTCAAGATTGGAAGGCCTCCGAGAAGGAAGAACAATCCCAAACAGACCAGTATGCAGCCTAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

225

Amino Acids

24.25

Weight (kDa)

10.33

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 490
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 226
AclI AACGTT 1 cut(s) 404
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 2 cut(s) 397, 492
AfiI CCNNNNNNNGG 2 cut(s) 66, 183
AgsI TTSAA 4 cut(s) 212, 272, 366, 548
AjnI CCWGG 2 cut(s) 356, 418
AluBI AGCT 2 cut(s) 341, 427
AluI AGCT 2 cut(s) 341, 427
Alw26I GTCTC 2 cut(s) 99, 216
Ama87I CYCGRG 1 cut(s) 551
AoxI GGCC 5 cut(s) 68, 115, 323, 473, 620
ApeKI GCWGC 3 cut(s) 338, 521, 661
ApoI RAATTY 1 cut(s) 263
Asp718I GGTACC 1 cut(s) 490
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 2 cut(s) 80, 144
AspS9I GGNCC 4 cut(s) 57, 68, 115, 473
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 1 cut(s) 57
AvrII CCTAGG 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 170, 192
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 350, 533
BccI CCATC 2 cut(s) 241, 533
BceAI ACGGC 1 cut(s) 155
BciT130I CCWGG 2 cut(s) 358, 420
BcoDI GTCTC 2 cut(s) 99, 216
BfaI CTAG 3 cut(s) 309, 345, 539
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 3 cut(s) 339, 522, 662
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 3 cut(s) 340, 523, 663
Bme1390I CCNGG 2 cut(s) 358, 420
Bme18I GGWCC 1 cut(s) 57
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 4 cut(s) 57, 68, 115, 473
BmiI GGNNCC 3 cut(s) 116, 355, 492
BmrFI CCNGG 2 cut(s) 358, 420
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 340, 495
BsaAI YACGTR 1 cut(s) 395
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 177, 308, 357
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 183
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 4 cut(s) 199, 494, 512, 654
BseBI CCWGG 2 cut(s) 358, 420
BseDI CCNNGG 3 cut(s) 177, 308, 357
BseLI CCNNNNNNNGG 2 cut(s) 66, 183
BseNI ACTGG 4 cut(s) 199, 494, 512, 654
BseRI GAGGAG 1 cut(s) 498
BseSI GKGCMC 2 cut(s) 170, 192
BseXI GCAGC 2 cut(s) 350, 533
BsgI GTGCAG 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 5 cut(s) 70, 117, 325, 475, 622
BshNI GGYRCC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 551
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 301, 577
BslI CCNNNNNNNGG 2 cut(s) 66, 183
BsmAI GTCTC 2 cut(s) 99, 216
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 301, 577
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 5 cut(s) 70, 117, 325, 475, 622
Bso31I GGTCTC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 3 cut(s) 170, 192, 356
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 1 cut(s) 226
BspANI GGCC 5 cut(s) 70, 117, 325, 475, 622
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 116, 355, 492
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 216
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 4 cut(s) 199, 494, 512, 654
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 177, 308, 357
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 2 cut(s) 177, 308
Bst2UI CCWGG 2 cut(s) 358, 420
Bst4CI ACNGT 3 cut(s) 31, 85, 532
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 425, 477
BstDEI CTNAG 2 cut(s) 439, 666
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 2 cut(s) 80, 144
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 99, 216
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 472, 481
BstNI CCWGG 2 cut(s) 358, 420
BstNSI RCATGY 1 cut(s) 459
BstSCI CCNGG 2 cut(s) 356, 418
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 2 cut(s) 170, 192
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 350, 533
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 5 cut(s) 70, 117, 325, 475, 622
Cac8I GCNNGC 2 cut(s) 425, 477
CfoI GCGC 2 cut(s) 80, 144
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 4 cut(s) 57, 68, 115, 473
CseI GACGC 1 cut(s) 372
Csp6I GTAC 2 cut(s) 396, 491
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 3 cut(s) 163, 456, 470
CviQI GTAC 2 cut(s) 396, 491
DdeI CTNAG 2 cut(s) 439, 666
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 177, 308
Eco147I AGGCCT 1 cut(s) 622
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 551
EcoO109I RGGNCCY 2 cut(s) 57, 115
EcoRII CCWGG 2 cut(s) 356, 418
EcoT14I CCWWGG 2 cut(s) 177, 308
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 2 cut(s) 177, 308
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 3 cut(s) 166, 459, 473
FaiI YATR 6 cut(s) 164, 173, 231, 457, 471, 659
FaqI GGGAC 2 cut(s) 301, 577
FatI CATG 3 cut(s) 162, 455, 469
Fnu4HI GCNGC 3 cut(s) 339, 522, 662
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 339, 522, 662
FspBI CTAG 3 cut(s) 309, 345, 539
GlaI GCGC 2 cut(s) 79, 143
GluI GCNGC 3 cut(s) 339, 522, 662
GsuI CTGGAG 2 cut(s) 340, 495
HaeIII GGCC 5 cut(s) 70, 117, 325, 475, 622
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 372
HhaI GCGC 2 cut(s) 80, 144
Hin1II CATG 3 cut(s) 166, 459, 473
Hin6I GCGC 2 cut(s) 78, 142
HinP1I GCGC 2 cut(s) 78, 142
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 411
Hpy188I TCNGA 2 cut(s) 564, 627
Hpy188III TCNNGA 2 cut(s) 212, 610
Hpy8I GTNNAC 1 cut(s) 411
HpyAV CCTTC 4 cut(s) 336, 481, 612, 624
HpyCH4III ACNGT 3 cut(s) 31, 85, 532
HpyCH4IV ACGT 2 cut(s) 394, 404
HpyCH4V TGCA 6 cut(s) 338, 448, 455, 521, 572, 661
HpyF10VI GCNNNNNNNGC 2 cut(s) 472, 481
HpyF3I CTNAG 2 cut(s) 439, 666
HpySE526I ACGT 2 cut(s) 394, 404
Hsp92II CATG 3 cut(s) 166, 459, 473
HspAI GCGC 2 cut(s) 78, 142
KpnI GGTACC 1 cut(s) 494
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 2 cut(s) 350, 533
MaeI CTAG 3 cut(s) 309, 345, 539
MaeII ACGT 2 cut(s) 394, 404
MaeIII GTNAC 3 cut(s) 127, 384, 496
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 2 cut(s) 32, 646
MhlI GDGCHC 3 cut(s) 170, 192, 356
MluCI AATT 2 cut(s) 263, 670
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 7 cut(s) 70, 247, 340, 436, 516, 519, 633
MseI TTAA 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 587
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 358, 420
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 2 cut(s) 358, 420
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 472, 481
NdeII GATC 1 cut(s) 319
NlaIII CATG 3 cut(s) 166, 459, 473
NlaIV GGNNCC 3 cut(s) 116, 355, 492
NmuCI GTSAC 1 cut(s) 384
NspI RCATGY 1 cut(s) 459
PceI AGGCCT 1 cut(s) 622
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PctI GAATGC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 3 cut(s) 340, 523, 663
Ppu21I YACGTR 1 cut(s) 395
PpuMI RGGWCCY 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 404
Psp5II RGGWCCY 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 356, 418
PspGI CCWGG 2 cut(s) 356, 418
PspN4I GGNNCC 3 cut(s) 116, 355, 492
PspPI GGNCC 4 cut(s) 57, 68, 115, 473
PspPPI RGGWCCY 1 cut(s) 57
RsaI GTAC 2 cut(s) 397, 492
RsaNI GTAC 2 cut(s) 396, 491
RseI CAYNNNNRTG 1 cut(s) 587
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 339, 522, 662
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 4 cut(s) 57, 68, 115, 473
ScrFI CCNGG 2 cut(s) 358, 420
SduI GDGCHC 3 cut(s) 170, 192, 356
SetI ASST 9 cut(s) 62, 343, 397, 407, 421, 429, 447, 492, 508
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 587
Sse9I AATT 2 cut(s) 263, 670
SseBI AGGCCT 1 cut(s) 622
SsiI CCGC 1 cut(s) 226
SspMI CTAG 3 cut(s) 309, 345, 539
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 356, 418
StyI CCWWGG 2 cut(s) 177, 308
TaaI ACNGT 3 cut(s) 31, 85, 532
TaiI ACGT 2 cut(s) 397, 407
TaqI TCGA 1 cut(s) 245
TasI AATT 2 cut(s) 263, 670
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseFI GTSAC 1 cut(s) 384
TseI GCWGC 3 cut(s) 338, 521, 661
Tsp45I GTSAC 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 3 cut(s) 309, 345, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.