FvH4_4g26661

Rho (Ras homology) subfamily of Ras-like small GTPases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000109
Physical Location & Seq
Forward (+)
27979257 .. 27980726
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26661.t1

Sequence Viewer

Length: 1344 bp
ATGTCTGATGAGTTCTTTGCTATTGGTAGGCTTCTCTCTTTGAAGCGCAAGATTCTAGATCTGAAAGCTGTCATTGGCACGCTCACCTCTGTATGGGATCTCCATAACCGTCTCCAGATGAGGGCAAGGGAGGATCGCTTTGTGCTTCGTTTTAGCAGAGCCGATGACCGGAAAAATATTATGTCTGGTGGCCCTTGCTTCTATGGAAGATCTCTGTTTGTTCTTGCTGAGTATGATGGTTTGGAAGATGTCGAAATCAAAGGTCTTCCGGATGCGCTTATGACTGATGAAGCGGTGGAGAAGGTAGGTTGGACCCTCGGGCGGGTTGAACATATTGATAAGATGAACATCAGAAGGGGAACCCGGGCTCGGGTTCGAATTTTGCAGAAGCTAAGTGCGTCGATCAAGGAGGCTTTTGGGGAGATGACATTTGATTTCGGTTCGAGAAGATTTCCGGTGAAGTTGAACGTGAAGTATGACCGGACCGTGGGCTTCTGCAGGGTTTGTGGTCTTCTAGTGCATTCAGAATCAGGGTGTGCAGGTAAACCTAACCTGCTTCCTCAGTTTATTGAGATTGAATCAATGAAGACTCCTTTTGGGTTTGGGGGAGCAGCTAGGGTTTCTGGAAACCCTAATCCTAATTCTAATCTAAAGGCGTATCCTAGGCTCTTTGCACAGCAAACCGAGTTGCAGGTGGATAGCTCGGGAGGGGGTTTCTCATCTTCATCCATGCCATTCCTCAAATCGGTTGCAGGCCCTAGCATGCTGCCGAAATTGTCATTCTCTATTCTAGGCATTTCGGCAACAGATTTGGCCTTGATGTTGGATCAGTTGCACACTCCTCCTATGTTGCAGGTGACTCCGGTTGCAACGTCGGCGACCATTGTTGAGATCCCTCAGGTATCTTCCCCTACTCCTATTTTCGGTGTTAAGAGAGGTCCGGAACTTGCTTTAGGTCCTTTGGGGAAACGTGGTAAAGGTGATGAGGTTTCCAAGTCCATGGCTTTGGTGCCTTATGTGTTGGATTTTTCACCGAAGATGGCTCTAGCTCATTTGGGTGGTGTGATTGTGGTTTCTCCGGCTAAGAAAAGGAAGCCAGGCCGTCCAAAGGGTTCTTTGAATAAGAAAACTATTGGTGTTGCTAATCAGTCTGTGCAGGGGCCGAAAAGAGCTAAAAAACGCTCTTTTGGTGCCCGGAAAAATTTGAAGGAGTTGGTCAAAGTACAGGATCCTTCTGAAGAAGAGGGGGAGGTAGTAGCTGTGGATCTAGAGCCAAATTCTTCTGGAGGTAGTAGCTGTGGATCTGGAGGTAGTAGCTCGTCGGGGGTCTCCTCTCCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632 Ras

Protein Analysis

448

Amino Acids

48.24

Weight (kDa)

9.7

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 8 - 79 4.7e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000109)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11460 FvH4_1g20081 FvH4_1g21331 FvH4_1g22022 FvH4_1g27932 FvH4_2g04010 FvH4_2g07601 FvH4_2g09181 FvH4_2g18601 FvH4_2g24951 FvH4_2g27371 FvH4_3g15420 FvH4_3g26790 FvH4_3g26791 FvH4_3g34441 FvH4_3g34930 FvH4_3g45133 FvH4_4g02561 FvH4_4g05731 FvH4_4g05732 FvH4_4g06570 FvH4_4g09962 FvH4_4g13551 FvH4_4g13621 FvH4_4g14830 FvH4_4g15081 FvH4_4g26661 FvH4_5g05871 FvH4_5g08822 FvH4_5g12461 FvH4_5g24922 FvH4_5g30051 FvH4_5g30200 FvH4_5g30551 FvH4_5g32991 FvH4_5g36132 FvH4_5g37291 FvH4_6g07931 FvH4_6g08641 FvH4_6g12800 FvH4_6g13840 FvH4_6g13900 FvH4_6g16432 FvH4_6g16701 FvH4_6g28831 FvH4_6g31171 FvH4_6g41261 FvH4_7g00030 FvH4_7g01201 FvH4_7g08120 FvH4_7g10071 FvH4_7g18780
rosa_chinensis RchiOBHm_Chr2g0119561 RchiOBHm_Chr3g0458511 RchiOBHm_Chr3g0477731 RchiOBHm_Chr3g0479111 RchiOBHm_Chr3g0497091 RchiOBHm_Chr5g0072451 RchiOBHm_Chr6g0284681 RchiOBHm_Chr6g0311691 RchiOBHm_Chr7g0182191
rosa_laevigata RLG00000000983 RLG00000001598 RLG00000004616 RLG00000004931 RLG00000006806 RLG00000008371 RLG00000009544 RLG00000009718 RLG00000013465 RLG00000013533 RLG00000014631 RLG00000014987 RLG00000015588 RLG00000016226 RLG00000018171 RLG00000018433 RLG00000018649 RLG00000018710 RLG00000018870 RLG00000019205 RLG00000020638 RLG00000023424 RLG00000024707 RLG00000025967 RLG00000030020 RLG00000030596 RLG00000030996 RLG00000033451 RLG00000033757 RLG00000033758 RLG00000033808 RLG00000033812 RLG00000034857 RLG00000035240 RLG00000035691 RLG00000036232 RLG00000036301 RLG00000036412
rosa_multiflora Rmu_co8113544.1_g000001 Rmu_co8372331.1_g000001 Rmu_sc0000298.1_g000003 Rmu_sc0000552.1_g000026 Rmu_sc0000814.1_g000037 Rmu_sc0001211.1_g000126 Rmu_sc0001311.1_g000026 Rmu_sc0001354.1_g000009 Rmu_sc0002119.1_g000029 Rmu_sc0002357.1_g000020 Rmu_sc0002573.1_g000014 Rmu_sc0002586.1_g000022 Rmu_sc0003517.1_g000004 Rmu_sc0003558.1_g000001 Rmu_sc0004084.1_g000044 Rmu_sc0004143.1_g000011 Rmu_sc0004514.1_g000002 Rmu_sc0005370.1_g000004 Rmu_sc0005392.1_g000015 Rmu_sc0005664.1_g000009 Rmu_sc0006235.1_g000009 Rmu_sc0006423.1_g000001 Rmu_sc0006838.1_g000018 Rmu_sc0006847.1_g000005 Rmu_sc0006959.1_g000019 Rmu_sc0007111.1_g000002 Rmu_sc0009125.1_g000001 Rmu_sc0009546.1_g000015 Rmu_sc0009670.1_g000006 Rmu_sc0011618.1_g000004 Rmu_sc0012306.1_g000002 Rmu_sc0012306.1_g000003 Rmu_sc0012355.1_g000001 Rmu_sc0012355.1_g000002 Rmu_sc0013116.1_g000002 Rmu_sc0016872.1_g000001 Rmu_sc0017043.1_g000005 Rmu_sc0017081.1_g000003 Rmu_sc0018075.1_g000002 Rmu_sc0020578.1_g000002 Rmu_sc0034515.1_g000001 Rmu_sc0040072.1_g000003 Rmu_ssc0000309.1_g000056 Rmu_ssc0000330.1_g000048
rosa_roxburghii Rroxscaffold_1G00007410 Rroxscaffold_1G00027350 Rroxscaffold_1G00043810 Rroxscaffold_2G00099880 Rroxscaffold_2G00112650 Rroxscaffold_2G00122020 Rroxscaffold_3G00223350 Rroxscaffold_3G00239670 Rroxscaffold_5G00333740 Rroxscaffold_5G00335340 Rroxscaffold_5G00341030 Rroxscaffold_5G00342730 Rroxscaffold_6G00426030 Rroxscaffold_7G00162470 Rroxscaffold_7G00196110 Rroxscaffold_7G00202440 Rroxscaffold_7G00202450 Rroxscaffold_7G00215740
rosa_rugosa Rorug01G0176600 Rorug01G0276600 Rorug02G0236500 Rorug02G0277000 Rorug02G0363300 Rorug02G0375900 Rorug02G0473700 Rorug02G0546200 Rorug02G0601000 Rorug03G0158400 Rorug03G0289500 Rorug04G0026600 Rorug04G0090000 Rorug04G0105500 Rorug04G0263100 Rorug04G0394500 Rorug05G0122200 Rorug05G0152200 Rorug05G0541800 Rorug05G0551100 Rorug05G0554400 Rorug06G0244900 Rorug06G0401400
rosa_samantha Rh1CG158000 Rh1CG280800 Rh1CG326900 Rh2BG051500 Rh2BG101500 Rh2BG438200 Rh2BG509100 Rh2BG531600 Rh2BG531800 Rh2BG629800 Rh2BG629900 Rh2CG565300 Rh2DG448000 Rh2DG540600 Rh2DG540700 Rh2DG641700 Rh2DG641800 Rh3AG222200 Rh3BG034200 Rh3BG254700 Rh3DG286800 Rh3DG322600 Rh4AG009200 Rh4AG050400 Rh4AG223100 Rh4BG072500 Rh4BG106000 Rh4CG010200 Rh4CG053700 Rh4CG236100 Rh4CG236200 Rh4CG236300 Rh4DG104800 Rh5AG474800 Rh5BG214500 Rh5BG360000 Rh5BG403700 Rh5BG494900 Rh5DG255300 Rh6AG205400 Rh6BG227300 Rh6CG280700 Rh6DG273400 Rh7AG187300 Rh7AG220800 Rh7AG355700 Rh7AG462000 Rh7AG462200 Rh7AG465900 Rh7CG198300 Rh7CG222100 Rh7CG373000 Rh7CG479300 Rh7DG233800
rosa_wichuraiana Rw0G018350 Rw1G026500 Rw2G024750 Rw2G051200 Rw5G001570 Rw5G036850 Rw6G016070 Rw6G042710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 682, 844
Acc36I ACCTGC 4 cut(s) 530, 561, 682, 844
AccB1I GGYRCC 2 cut(s) 1009, 1190
AccIII TCCGGA 2 cut(s) 268, 940
AciI CCGC 2 cut(s) 293, 322
AclWI GGATC 8 cut(s) 105, 141, 834, 886, 1223, 1236, 1272, 1309
AcsI RAATTY 3 cut(s) 378, 1201, 1276
AcuI CTGAAG 1 cut(s) 1257
AfaI GTAC 1 cut(s) 1224
AgsI TTSAA 6 cut(s) 43, 329, 466, 578, 1120, 1207
AjnI CCWGG 1 cut(s) 1096
AluBI AGCT 9 cut(s) 68, 391, 614, 702, 1049, 1172, 1259, 1296, 1317
AluI AGCT 9 cut(s) 68, 391, 614, 702, 1049, 1172, 1259, 1296, 1317
Alw26I GTCTC 2 cut(s) 116, 1333
AlwI GGATC 8 cut(s) 105, 141, 834, 886, 1223, 1236, 1272, 1309
Ama87I CYCGRG 4 cut(s) 317, 363, 369, 703
Aor13HI TCCGGA 2 cut(s) 268, 940
AoxI GGCC 5 cut(s) 190, 754, 813, 1099, 1160
ApeKI GCWGC 2 cut(s) 611, 766
ApoI RAATTY 3 cut(s) 378, 1201, 1276
AspA2I CCTAGG 1 cut(s) 662
AspLEI GCGC 2 cut(s) 48, 277
AspS9I GGNCC 7 cut(s) 191, 312, 483, 755, 938, 956, 1160
AsuC2I CCSGG 3 cut(s) 364, 365, 1195
AsuHPI GGTGA 5 cut(s) 76, 469, 868, 992, 1023
AsuII TTCGAA 1 cut(s) 376
AvaI CYCGRG 4 cut(s) 317, 363, 369, 703
AvaII GGWCC 4 cut(s) 312, 483, 938, 956
AvrII CCTAGG 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 897
BaeGI GKGCMC 1 cut(s) 1195
BamHI GGATCC 1 cut(s) 1228
BanI GGYRCC 2 cut(s) 1009, 1190
BanII GRGCYC 1 cut(s) 370
BbsI GAAGAC 3 cut(s) 257, 503, 593
BbvI GCAGC 2 cut(s) 623, 753
BccI CCATC 2 cut(s) 230, 1033
BceAI ACGGC 1 cut(s) 1086
BciT130I CCWGG 1 cut(s) 1098
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 3 cut(s) 364, 365, 1195
BcoDI GTCTC 2 cut(s) 116, 1333
BfaI CTAG 8 cut(s) 56, 515, 615, 663, 759, 791, 1046, 1268
BfmI CTRYAG 1 cut(s) 496
BfuAI ACCTGC 4 cut(s) 530, 561, 682, 844
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 2 cut(s) 58, 209
BisI GCNGC 2 cut(s) 612, 767
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 2 cut(s) 613, 768
Bme1390I CCNGG 4 cut(s) 364, 365, 1098, 1195
Bme18I GGWCC 4 cut(s) 312, 483, 938, 956
BmeT110I CYCGRG 4 cut(s) 317, 363, 369, 703
BmgT120I GGNCC 7 cut(s) 191, 312, 483, 755, 938, 956, 1160
BmiI GGNNCC 6 cut(s) 314, 361, 1011, 1161, 1192, 1230
BmrFI CCNGG 4 cut(s) 364, 365, 1098, 1195
BmsI GCATC 1 cut(s) 262
BpiI GAAGAC 3 cut(s) 257, 503, 593
BpmI CTGGAG 4 cut(s) 98, 1305, 1320, 1326
Bpu14I TTCGAA 1 cut(s) 376
BpuMI CCSGG 3 cut(s) 364, 365, 1195
BsaBI GATNNNNATC 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 1333
BsaJI CCNNGG 5 cut(s) 316, 363, 486, 662, 999
BsaWI WCCGGW 6 cut(s) 168, 268, 454, 480, 862, 940
Bse21I CCTNAGG 1 cut(s) 897
Bse8I GATNNNNATC 1 cut(s) 347
BseAI TCCGGA 2 cut(s) 268, 940
BseBI CCWGG 1 cut(s) 1098
BseDI CCNNGG 5 cut(s) 316, 363, 486, 662, 999
BseGI GGATG 2 cut(s) 277, 725
BseJI GATNNNNATC 1 cut(s) 347
BseMII CTCAG 3 cut(s) 219, 575, 911
BseRI GAGGAG 2 cut(s) 831, 1321
BseSI GKGCMC 1 cut(s) 1195
BseXI GCAGC 2 cut(s) 623, 753
BsgI GTGCAG 2 cut(s) 558, 1175
BshFI GGCC 5 cut(s) 192, 756, 815, 1101, 1162
BshNI GGYRCC 2 cut(s) 1009, 1190
BsiHKCI CYCGRG 4 cut(s) 317, 363, 369, 703
BsiSI CCGG 9 cut(s) 169, 269, 364, 455, 481, 863, 941, 1079, 1195
BsmAI GTCTC 2 cut(s) 116, 1333
BsmBI CGTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 520
BsnI GGCC 5 cut(s) 192, 756, 815, 1101, 1162
Bso31I GGTCTC 1 cut(s) 1333
BsoBI CYCGRG 4 cut(s) 317, 363, 369, 703
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 370, 1195
Bsp13I TCCGGA 2 cut(s) 268, 940
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 2 cut(s) 293, 322
BspANI GGCC 5 cut(s) 192, 756, 815, 1101, 1162
BspCNI CTCAG 3 cut(s) 220, 574, 910
BspEI TCCGGA 2 cut(s) 268, 940
BspLI GGNNCC 6 cut(s) 314, 361, 1011, 1161, 1192, 1230
BspMAI CTGCAG 1 cut(s) 500
BspMI ACCTGC 4 cut(s) 530, 561, 682, 844
BspPI GGATC 8 cut(s) 105, 141, 834, 886, 1223, 1236, 1272, 1309
BspT104I TTCGAA 1 cut(s) 376
BspT107I GGYRCC 2 cut(s) 1009, 1190
BspTNI GGTCTC 1 cut(s) 1333
BssECI CCNNGG 5 cut(s) 316, 363, 486, 662, 999
BssT1I CCWWGG 2 cut(s) 662, 999
Bst2UI CCWGG 1 cut(s) 1098
Bst4CI ACNGT 2 cut(s) 110, 487
Bst6I CTCTTC 1 cut(s) 1236
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 3 cut(s) 80, 754, 764
BstDEI CTNAG 5 cut(s) 228, 392, 561, 897, 1083
BstDSI CCRYGG 2 cut(s) 486, 999
BstF5I GGATG 2 cut(s) 277, 725
BstHHI GCGC 2 cut(s) 48, 277
BstMAI GTCTC 2 cut(s) 116, 1333
BstMWI GCNNNNNNNGC 1 cut(s) 875
BstNI CCWGG 1 cut(s) 1098
BstNSI RCATGY 1 cut(s) 766
BstSCI CCNGG 4 cut(s) 362, 363, 1096, 1193
BstSFI CTRYAG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 1195
BstV1I GCAGC 2 cut(s) 623, 753
BstV2I GAAGAC 3 cut(s) 257, 503, 593
BstX2I RGATCY 7 cut(s) 58, 97, 209, 891, 1228, 1264, 1301
BstXI CCANNNNNNTGG 2 cut(s) 1000, 1006
BstYI RGATCY 7 cut(s) 58, 97, 209, 891, 1228, 1264, 1301
Bsu36I CCTNAGG 1 cut(s) 897
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 5 cut(s) 192, 756, 815, 1101, 1162
BtgI CCRYGG 2 cut(s) 486, 999
BtsCI GGATG 2 cut(s) 277, 725
BveI ACCTGC 4 cut(s) 530, 561, 682, 844
Cac8I GCNNGC 3 cut(s) 80, 754, 764
CfoI GCGC 2 cut(s) 48, 277
Cfr13I GGNCC 7 cut(s) 191, 312, 483, 755, 938, 956, 1160
Cfr9I CCCGGG 1 cut(s) 363
CpoI CGGWCCG 1 cut(s) 483
CseI GACGC 1 cut(s) 387
Csp6I GTAC 1 cut(s) 1223
CspI CGGWCCG 1 cut(s) 483
CviAII CATG 3 cut(s) 730, 763, 1000
CviQI GTAC 1 cut(s) 1223
DdeI CTNAG 5 cut(s) 228, 392, 561, 897, 1083
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
Eco130I CCWWGG 2 cut(s) 662, 999
Eco24I GRGCYC 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 1333
Eco47I GGWCC 4 cut(s) 312, 483, 938, 956
Eco57I CTGAAG 1 cut(s) 1257
Eco81I CCTNAGG 1 cut(s) 897
Eco88I CYCGRG 4 cut(s) 317, 363, 369, 703
EcoO109I RGGNCCY 2 cut(s) 755, 956
EcoRII CCWGG 1 cut(s) 1096
EcoT14I CCWWGG 2 cut(s) 662, 999
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 2 cut(s) 662, 999
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 3 cut(s) 733, 766, 1003
FatI CATG 3 cut(s) 729, 762, 999
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 612, 767
FokI GGATG 2 cut(s) 284, 712
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 612, 767
FspBI CTAG 8 cut(s) 56, 515, 615, 663, 759, 791, 1046, 1268
GlaI GCGC 2 cut(s) 47, 276
GluI GCNGC 2 cut(s) 612, 767
GsuI CTGGAG 4 cut(s) 98, 1305, 1320, 1326
HaeIII GGCC 5 cut(s) 192, 756, 815, 1101, 1162
HapII CCGG 9 cut(s) 169, 269, 364, 455, 481, 863, 941, 1079, 1195
HgaI GACGC 1 cut(s) 387
HhaI GCGC 2 cut(s) 48, 277
Hin1II CATG 3 cut(s) 733, 766, 1003
Hin6I GCGC 2 cut(s) 46, 275
HinP1I GCGC 2 cut(s) 46, 275
HinfI GANTC 5 cut(s) 52, 527, 578, 589, 859
HpaII CCGG 9 cut(s) 169, 269, 364, 455, 481, 863, 941, 1079, 1195
HphI GGTGA 5 cut(s) 76, 469, 868, 992, 1023
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 5 cut(s) 7, 63, 353, 526, 1237
Hpy8I GTNNAC 1 cut(s) 545
Hpy99I CGWCG 3 cut(s) 403, 877, 1324
HpyAV CCTTC 4 cut(s) 295, 348, 1201, 1242
HpyCH4III ACNGT 2 cut(s) 110, 487
HpyCH4IV ACGT 3 cut(s) 468, 872, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 875
HpyF3I CTNAG 5 cut(s) 228, 392, 561, 897, 1083
HpySE526I ACGT 3 cut(s) 468, 872, 970
Hsp92II CATG 3 cut(s) 733, 766, 1003
HspAI GCGC 2 cut(s) 46, 275
Kpn2I TCCGGA 2 cut(s) 268, 940
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 2 cut(s) 623, 753
LweI GCATC 1 cut(s) 262
MaeI CTAG 8 cut(s) 56, 515, 615, 663, 759, 791, 1046, 1268
MaeII ACGT 3 cut(s) 468, 872, 970
MaeIII GTNAC 1 cut(s) 856
MflI RGATCY 7 cut(s) 58, 97, 209, 891, 1228, 1264, 1301
MhlI GDGCHC 2 cut(s) 370, 1195
MluCI AATT 5 cut(s) 378, 640, 773, 1201, 1276
MlyI GAGTC 2 cut(s) 583, 853
MmeI TCCRAC 3 cut(s) 290, 804, 1002
MroI TCCGGA 2 cut(s) 268, 940
MseI TTAA 1 cut(s) 930
MslI CAYNNNNRTG 1 cut(s) 1056
MspI CCGG 9 cut(s) 169, 269, 364, 455, 481, 863, 941, 1079, 1195
MspR9I CCNGG 4 cut(s) 364, 365, 1098, 1195
Mva1269I GAATGC 1 cut(s) 520
MvaI CCWGG 1 cut(s) 1098
MwoI GCNNNNNNNGC 1 cut(s) 875
NciI CCSGG 3 cut(s) 364, 365, 1195
NcoI CCATGG 1 cut(s) 999
NlaIII CATG 3 cut(s) 733, 766, 1003
NlaIV GGNNCC 6 cut(s) 314, 361, 1011, 1161, 1192, 1230
NmuCI GTSAC 1 cut(s) 856
NspI RCATGY 1 cut(s) 766
NspV TTCGAA 1 cut(s) 376
PaeI GCATGC 1 cut(s) 766
PaqCI CACCTGC 2 cut(s) 682, 844
PctI GAATGC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 52, 527, 578
PkrI GCNGC 2 cut(s) 613, 768
PleI GAGTC 2 cut(s) 583, 853
PpsI GAGTC 2 cut(s) 583, 853
PpuMI RGGWCCY 1 cut(s) 956
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 1 cut(s) 1096
PspGI CCWGG 1 cut(s) 1096
PspN4I GGNNCC 6 cut(s) 314, 361, 1011, 1161, 1192, 1230
PspPI GGNCC 7 cut(s) 191, 312, 483, 755, 938, 956, 1160
PspPPI RGGWCCY 1 cut(s) 956
PstI CTGCAG 1 cut(s) 500
PsuI RGATCY 7 cut(s) 58, 97, 209, 891, 1228, 1264, 1301
RsaI GTAC 1 cut(s) 1224
RsaNI GTAC 1 cut(s) 1223
RseI CAYNNNNRTG 1 cut(s) 1056
Rsr2I CGGWCCG 1 cut(s) 483
RsrII CGGWCCG 1 cut(s) 483
SaqAI TTAA 1 cut(s) 930
SatI GCNGC 2 cut(s) 612, 767
Sau96I GGNCC 7 cut(s) 191, 312, 483, 755, 938, 956, 1160
SchI GAGTC 2 cut(s) 583, 853
ScrFI CCNGG 4 cut(s) 364, 365, 1098, 1195
SduI GDGCHC 2 cut(s) 370, 1195
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 496
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 4 cut(s) 312, 483, 938, 956
SmaI CCCGGG 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 1056
SphI GCATGC 1 cut(s) 766
Sse9I AATT 5 cut(s) 378, 640, 773, 1201, 1276
SsiI CCGC 2 cut(s) 293, 322
SspI AATATT 1 cut(s) 178
SspMI CTAG 8 cut(s) 56, 515, 615, 663, 759, 791, 1046, 1268
StyD4I CCNGG 4 cut(s) 362, 363, 1096, 1193
StyI CCWWGG 2 cut(s) 662, 999
TaaI ACNGT 2 cut(s) 110, 487
TaiI ACGT 3 cut(s) 471, 875, 973
TaqI TCGA 4 cut(s) 252, 376, 401, 443
TasI AATT 5 cut(s) 378, 640, 773, 1201, 1276
TatI WGTACW 1 cut(s) 1222
TfiI GAWTC 3 cut(s) 52, 527, 578
Tru1I TTAA 1 cut(s) 930
Tru9I TTAA 1 cut(s) 930
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 2 cut(s) 611, 766
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 4 cut(s) 303, 359, 599, 714
TspMI CCCGGG 1 cut(s) 363
VpaK11BI GGWCC 4 cut(s) 312, 483, 938, 956
XapI RAATTY 3 cut(s) 378, 1201, 1276
XbaI TCTAGA 2 cut(s) 55, 1267
XceI RCATGY 1 cut(s) 766
XmaI CCCGGG 1 cut(s) 363
XmaJI CCTAGG 1 cut(s) 662
XspI CTAG 8 cut(s) 56, 515, 615, 663, 759, 791, 1046, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.