Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016550

Physical Location & Seq

Genomic Coordinates Reverse (-)

19142461 .. 19145898

Gene Structure 3438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1084800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGAGTCTGTATGTGAAAGCTGTGCCACCTGCGGATCTGAATAGGAACACAGAGTGGTTCATGTACCCTGGTGTTTGGACCACCTATATCCTCATCCTCTTCTTCTCTTGGCTTCTCGTGCTCTCAATCTTTGGCTGCTCTCCCGGCATGGCTTGGACCATAGTCAATCTCTCTCATTTTGCGATCACATATCACTTCTTCCATTGGAAGAAAGGAACTCCCTTTGCTGAAGACCAGGGGATCTACAATGGACTGACATGGTGGGAGCAGATGGATAGTGGAAAGCAGCTCACTCGCAACAGGAAGTTCTTAACCGTTGTTCCTGTGGTGCTGTACTTGATAGCCTCACACACAACTGACTACCAGCATCCGATGCTGTTTTTCAACAGTCTTGCAGTCATCGTGCTTGTCATTGCAAAGTTCCCCAACATGCACAAAGTCCGGATCTTTGGAATCAATGGAGAAGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

159

Amino Acids

18.34

Weight (kDa)

9.04

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ORMDL	PF04061	15 - 149	1.3e-51	ORMDL family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01230
fragaria_vesca	FvH4_7g17010
malus_domestica	MD01G1084800.v1.1 MD07G1153400.v1.1
prunus_persica	Prupe.2G192400_v2.0.a1
pyrus_communis	pycom07g15120
rosa_chinensis	RchiOBHm_Chr1g0360391
rosa_laevigata	RLG00000027811
rosa_multiflora	Rmu_ssc0000368.1_g000077
rosa_roxburghii	Rroxscaffold_4G00296160
rosa_rugosa	Rorug01G0276600
rosa_samantha	Rh1BG255700 Rh1DG285500
rosa_wichuraiana	Rw1G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	45, 251, 455
AcuI	CTGAAG	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	68, 338
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	70, 237
AluBI	AGCT	2 cut(s)	23, 292
AluI	AGCT	2 cut(s)	23, 292
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	3 cut(s)	45, 251, 455
Aor13HI	TCCGGA	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	138, 289
AspS9I	GGNCC	2 cut(s)	81, 159
AsuC2I	CCSGG	1 cut(s)	147
AvaII	GGWCC	2 cut(s)	81, 159
BauI	CACGAG	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	125, 301
BccI	CCATC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	2 cut(s)	72, 239
BcnI	CCSGG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	139, 290
BlsI	GCNGC	2 cut(s)	140, 291
Bme1390I	CCNGG	3 cut(s)	72, 147, 239
Bme18I	GGWCC	2 cut(s)	81, 159
BmgT120I	GGNCC	2 cut(s)	81, 159
BmrFI	CCNGG	3 cut(s)	72, 147, 239
BmsI	GCATC	2 cut(s)	366, 379
BoxI	GACNNNNGTC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	70, 238
BsaWI	WCCGGW	1 cut(s)	444
Bse3DI	GCAATG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	72, 239
BseDI	CCNNGG	2 cut(s)	70, 238
BseGI	GGATG	2 cut(s)	96, 370
BseMI	GCAATG	1 cut(s)	414
BseXI	GCAGC	2 cut(s)	125, 301
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	147, 445
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	4 cut(s)	37, 186, 243, 447
BspACI	CCGC	1 cut(s)	35
BspEI	TCCGGA	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	3 cut(s)	45, 251, 455
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	2 cut(s)	70, 238
BssMI	GATC	4 cut(s)	37, 186, 243, 447
BssSI	CACGAG	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	2 cut(s)	72, 239
Bst4CI	ACNGT	2 cut(s)	319, 392
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstF5I	GGATG	2 cut(s)	96, 370
BstKTI	GATC	4 cut(s)	40, 189, 246, 450
BstMBI	GATC	4 cut(s)	37, 186, 243, 447
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 147, 376
BstNI	CCWGG	2 cut(s)	72, 239
BstNSI	RCATGY	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	70, 145, 237
BstV1I	GCAGC	2 cut(s)	125, 301
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	3 cut(s)	37, 243, 447
BstYI	RGATCY	3 cut(s)	37, 243, 447
BtsCI	GGATG	2 cut(s)	96, 370
BveI	ACCTGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	81, 159
Csp6I	GTAC	2 cut(s)	67, 337
CviAII	CATG	4 cut(s)	64, 151, 261, 433
CviJI	RGCY	6 cut(s)	23, 115, 138, 155, 292, 347
CviKI_1	RGCY	6 cut(s)	23, 115, 138, 155, 292, 347
CviQI	GTAC	2 cut(s)	67, 337
DpnI	GATC	4 cut(s)	39, 188, 245, 449
DpnII	GATC	4 cut(s)	37, 186, 243, 447
DraIII	CACNNNGTG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	81, 159
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	70, 237
FaeI	CATG	4 cut(s)	67, 154, 264, 436
FaiI	YATR	8 cut(s)	15, 65, 90, 152, 164, 193, 262, 434
FatI	CATG	4 cut(s)	63, 150, 260, 432
Fnu4HI	GCNGC	2 cut(s)	139, 290
FokI	GGATG	2 cut(s)	83, 357
Fsp4HI	GCNGC	2 cut(s)	139, 290
GluI	GCNGC	2 cut(s)	139, 290
HapII	CCGG	2 cut(s)	147, 445
Hin1II	CATG	4 cut(s)	67, 154, 264, 436
HinfI	GANTC	2 cut(s)	7, 456
HpaII	CCGG	2 cut(s)	147, 445
Hpy188I	TCNGA	2 cut(s)	42, 375
Hpy188III	TCNNGA	1 cut(s)	445
HpyCH4III	ACNGT	2 cut(s)	319, 392
HpyCH4V	TGCA	3 cut(s)	398, 419, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 147, 376
Hsp92II	CATG	4 cut(s)	67, 154, 264, 436
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	4 cut(s)	37, 186, 243, 447
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	2 cut(s)	125, 301
LweI	GCATC	2 cut(s)	366, 379
MalI	GATC	4 cut(s)	39, 188, 245, 449
MboI	GATC	4 cut(s)	37, 186, 243, 447
MboII	GAAGA	5 cut(s)	94, 97, 193, 223, 245
MflI	RGATCY	3 cut(s)	37, 243, 447
MhlI	GDGCHC	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	104, 110, 358
MroI	TCCGGA	1 cut(s)	444
MseI	TTAA	1 cut(s)	314
MspI	CCGG	2 cut(s)	147, 445
MspR9I	CCNGG	3 cut(s)	72, 147, 239
MvaI	CCWGG	2 cut(s)	72, 239
MwoI	GCNNNNNNNGC	3 cut(s)	121, 147, 376
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	4 cut(s)	37, 186, 243, 447
NlaIII	CATG	4 cut(s)	67, 154, 264, 436
NspI	RCATGY	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	140, 291
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PshAI	GACNNNNGTC	1 cut(s)	164
Psp6I	CCWGG	2 cut(s)	70, 237
PspGI	CCWGG	2 cut(s)	70, 237
PspPI	GGNCC	2 cut(s)	81, 159
PsuI	RGATCY	3 cut(s)	37, 243, 447
RsaI	GTAC	2 cut(s)	68, 338
RsaNI	GTAC	2 cut(s)	67, 337
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	139, 290
Sau3AI	GATC	4 cut(s)	37, 186, 243, 447
Sau96I	GGNCC	2 cut(s)	81, 159
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	72, 147, 239
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	4 cut(s)	25, 34, 89, 294
SfaNI	GCATC	2 cut(s)	366, 379
SinI	GGWCC	2 cut(s)	81, 159
SsiI	CCGC	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	70, 145, 237
TaaI	ACNGT	2 cut(s)	319, 392
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseI	GCWGC	2 cut(s)	138, 289
TspDTI	ATGAA	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	81, 159
XceI	RCATGY	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.