Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000368.1

Orthogroup ID

OG0016550

Physical Location & Seq

Genomic Coordinates Reverse (-)

350598 .. 352735

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000368.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggcgagcctgtatgtgaaagctgtgcctcctgcggatctgaataggaacacagagtggttcatgtaccctggcgtttggaccacctatattctcatcctcttcttctcttggctccttgtgctctcgatttttggctgctctcctggcatggcttggaccatagtcaatctctctcatttcgtggtaacttatcaattcttccactggaaaaaaggaactccttttgccgaagaccaggggatctacaatggattgacttggtgggagcagatggataatgggaagcagctcacccgtaacaggaagttcttaacggttgttcctgtggtgctgtacttgatagcctcacacacaactgactatcagcacccgatgctctttctcaacactcttgcggtcattgttctagtgattgccaaattcccaaacatgcacaaagtccggatttttggaatcaatggagataagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ORMDL

Protein Analysis

157

Amino Acids

18.22

Weight (kDa)

9.27

Isoelectric Point (pI)

23.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01230
fragaria_vesca	FvH4_7g17010
malus_domestica	MD01G1084800.v1.1 MD07G1153400.v1.1
prunus_persica	Prupe.2G192400_v2.0.a1
pyrus_communis	pycom07g15120
rosa_chinensis	RchiOBHm_Chr1g0360391
rosa_laevigata	RLG00000027811
rosa_multiflora	Rmu_ssc0000368.1_g000077
rosa_roxburghii	Rroxscaffold_4G00296160
rosa_rugosa	Rorug01G0276600
rosa_samantha	Rh1BG255700 Rh1DG285500
rosa_wichuraiana	Rw1G025730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	2 cut(s)	35, 398
AclWI	GGATC	2 cut(s)	45, 251
AcsI	RAATTY	1 cut(s)	422
AdeI	CACNNNGTG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	68, 338
AfiI	CCNNNNNNNGG	1 cut(s)	303
AjnI	CCWGG	3 cut(s)	70, 145, 237
AluBI	AGCT	2 cut(s)	23, 292
AluI	AGCT	2 cut(s)	23, 292
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	45, 251
Aor13HI	TCCGGA	1 cut(s)	444
ApeKI	GCWGC	2 cut(s)	138, 289
ApoI	RAATTY	1 cut(s)	422
AspS9I	GGNCC	2 cut(s)	81, 159
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	2 cut(s)	81, 159
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	125, 301
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	3 cut(s)	72, 147, 239
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	2 cut(s)	139, 290
BlsI	GCNGC	2 cut(s)	140, 291
Bme1390I	CCNGG	3 cut(s)	72, 147, 239
Bme18I	GGWCC	2 cut(s)	81, 159
BmgT120I	GGNCC	2 cut(s)	81, 159
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	72, 147, 239
BmsI	GCATC	1 cut(s)	366
BoxI	GACNNNNGTC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	70, 238
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	72, 147, 239
BseDI	CCNNGG	2 cut(s)	70, 238
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	125, 301
BsiHKAI	GWGCWC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	37, 243
BspACI	CCGC	2 cut(s)	35, 398
BspEI	TCCGGA	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	2 cut(s)	45, 251
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	70, 238
BssMI	GATC	2 cut(s)	37, 243
Bst2UI	CCWGG	3 cut(s)	72, 147, 239
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	96
BstKTI	GATC	2 cut(s)	40, 246
BstMBI	GATC	2 cut(s)	37, 243
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 147, 376
BstNI	CCWGG	3 cut(s)	72, 147, 239
BstNSI	RCATGY	1 cut(s)	436
BstPAI	GACNNNNGTC	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	70, 145, 237
BstV1I	GCAGC	2 cut(s)	125, 301
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	37, 243
BstYI	RGATCY	2 cut(s)	37, 243
BtsCI	GGATG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	81, 159
Csp6I	GTAC	2 cut(s)	67, 337
CviAII	CATG	3 cut(s)	64, 151, 433
CviJI	RGCY	7 cut(s)	9, 23, 115, 138, 155, 292, 347
CviKI_1	RGCY	7 cut(s)	9, 23, 115, 138, 155, 292, 347
CviQI	GTAC	2 cut(s)	67, 337
DpnI	GATC	2 cut(s)	39, 245
DpnII	GATC	2 cut(s)	37, 243
DraIII	CACNNNGTG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	81, 159
EcoRII	CCWGG	3 cut(s)	70, 145, 237
FaeI	CATG	3 cut(s)	67, 154, 436
FaiI	YATR	6 cut(s)	15, 65, 90, 152, 164, 434
FatI	CATG	3 cut(s)	63, 150, 432
Fnu4HI	GCNGC	2 cut(s)	139, 290
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	139, 290
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	2 cut(s)	139, 290
HapII	CCGG	1 cut(s)	445
Hin1II	CATG	3 cut(s)	67, 154, 436
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	127, 445
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 147, 376
Hsp92II	CATG	3 cut(s)	67, 154, 436
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	37, 243
LmnI	GCTCC	2 cut(s)	120, 268
Lsp1109I	GCAGC	2 cut(s)	125, 301
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	187, 299
MalI	GATC	2 cut(s)	39, 245
MboI	GATC	2 cut(s)	37, 243
MboII	GAAGA	4 cut(s)	94, 97, 193, 245
MflI	RGATCY	2 cut(s)	37, 243
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	197, 422
MnlI	CCTC	3 cut(s)	39, 110, 358
MroI	TCCGGA	1 cut(s)	444
MseI	TTAA	1 cut(s)	314
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	3 cut(s)	72, 147, 239
MvaI	CCWGG	3 cut(s)	72, 147, 239
MwoI	GCNNNNNNNGC	3 cut(s)	121, 147, 376
NdeII	GATC	2 cut(s)	37, 243
NlaIII	CATG	3 cut(s)	67, 154, 436
NlaIV	GGNNCC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	140, 291
PshAI	GACNNNNGTC	1 cut(s)	164
Psp6I	CCWGG	3 cut(s)	70, 145, 237
PspGI	CCWGG	3 cut(s)	70, 145, 237
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	81, 159
PsuI	RGATCY	2 cut(s)	37, 243
RsaI	GTAC	2 cut(s)	68, 338
RsaNI	GTAC	2 cut(s)	67, 337
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	139, 290
Sau3AI	GATC	2 cut(s)	37, 243
Sau96I	GGNCC	2 cut(s)	81, 159
ScrFI	CCNGG	3 cut(s)	72, 147, 239
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	3 cut(s)	25, 89, 294
SfaNI	GCATC	1 cut(s)	366
SinI	GGWCC	2 cut(s)	81, 159
Sse9I	AATT	2 cut(s)	197, 422
SsiI	CCGC	2 cut(s)	35, 398
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	3 cut(s)	70, 145, 237
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	197, 422
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	212
TseI	GCWGC	2 cut(s)	138, 289
TspDTI	ATGAA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	81, 159
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.