AT1G02220
NAC Family

NAC domain-containing protein 69-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020880
Physical Location & Seq
Reverse (-)
428650 .. 430720
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02220.1

Sequence Viewer

Length: 1185 bp
ATGGAAACTCCTGTGGGTTTAAGATTCTGTCCGACCGACGAGGAGATCGTCGTCGATTACCTTTGGCCGAAAAATTCCGATAGAGACACGAGCCATGTCGATCGATTCATTAACACAGTCCCTGTCTGTAGACTCGATCCTTGGGAGTTACCTTGCCAGTCAAGGATCAAACTGAAAGATGTGGCTTGGTGTTTCTTCAGACCTAAGGAGAACAAATATGGCAGAGGTGATCAGCAGATGAGAAAAACGAAATCTGGGTTTTGGAAGAGTACTGGCAGACCAAAGCCTATCATGCGTAATCGCCAACAGATCGGTGAGAAAAAGATTTTGATGTTTTACACGAGTAAGGAATCCAAATCCGATTGGGTTATACACGAGTACCACGGTTTCTCTCATAACCAGATGATGATGACATACACACTCTGTAAAGTTATGTTTAATGGTGGCATGAGAGAGAAGTCTTCCTCTTCTCCTTCTTCTTCTGGTGTTAGTGGAATTGAGCAGAGTCGTCGTGACTCTTTAATCCCTCAGCTTGTCAACAATTCTGAGGGATCCTCACTTCACAGAGAAGATCCAAGTCAGTTTGGTGATGTGCTGCAAGAAGCTCCAATCGAGGATGCTAAACTGACCGAGGAATTGGTAAAATGGCTGATGAATGATGAGGATGATGCTCAAATCGAGGATGCTATACCGATTGAGGAATGGGAAACATGGTTGAATGATATTGATGATGCTAAGGAGAAGAGTATCATGTTTATGCATGATAATCGAAGTGATTACAGACCTCCAAACTCATTAACTGGTGTCTTCAGTGATGATGTTAGCAGTGATGATAATGATTCTGATTTGCTAACTCCAAAAACAAACTCTATTCAAACTTCGAGCACTTGTGATAGTTTTGGTAGCTCAAATCATCGCATAGACCAGATCAAAGACCTGCAAGAATCTCCTACCTCAACAATCAACTTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTAATAACCAGTATTGATACCGCCGAGAAGAAGAAGAATCCTTATGATGATGCACAAGGGACTGAGATTGGTGAGCATAAATTGGGTCAAGAGACGATCAAGAAGAAAAGAGCTGGTTTCTTTCACAGGATGATACAAAAATTCGTCAAGAAAATTCACCTATGTTCTTCCATCTCAAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

394

Amino Acids

45.15

Weight (kDa)

5.58

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 128 1.5e-33 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02220 AT1G02230 AT1G02250 AT3G04420 AT3G04420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 945
AccI GTMKAC 1 cut(s) 130
AciI CCGC 1 cut(s) 1020
AclWI GGATC 5 cut(s) 131, 173, 546, 559, 566
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 3 cut(s) 73, 1139, 1152
AcuI CTGAAG 2 cut(s) 181, 793
AfaI GTAC 2 cut(s) 271, 380
AgsI TTSAA 2 cut(s) 718, 875
AluBI AGCT 5 cut(s) 532, 605, 906, 998, 1112
AluI AGCT 5 cut(s) 532, 605, 906, 998, 1112
Alw21I GWGCWC 1 cut(s) 887
Alw26I GTCTC 2 cut(s) 78, 1085
AlwI GGATC 5 cut(s) 131, 173, 546, 559, 566
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 595
ApoI RAATTY 3 cut(s) 73, 1139, 1152
AsuHPI GGTGA 6 cut(s) 239, 326, 599, 1000, 1082, 1148
AxyI CCTNAGG 1 cut(s) 204
BaeI ACNNNNGTAYC 2 cut(s) 362, 395
BamHI GGATCC 1 cut(s) 551
BauI CACGAG 3 cut(s) 88, 340, 374
BbsI GAAGAC 2 cut(s) 453, 799
Bbv12I GWGCWC 1 cut(s) 887
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 1 cut(s) 582
BccI CCATC 1 cut(s) 1178
BcgI CGANNNNNNTGC 4 cut(s) 491, 525, 749, 783
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 78, 1085
BfmI CTRYAG 1 cut(s) 127
BfuAI ACCTGC 1 cut(s) 945
BisI GCNGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 597
BmcAI AGTACT 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 553
BmsI GCATC 5 cut(s) 607, 658, 673, 721, 1039
BpiI GAAGAC 2 cut(s) 453, 799
BplI GAGNNNNNCTC 4 cut(s) 539, 571, 982, 1014
Bpu10I CCTNAGC 2 cut(s) 528, 735
BpuEI CTTGAG 2 cut(s) 966, 1159
Bsa29I ATCGAT 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 140, 382, 630
Bse1I ACTGG 4 cut(s) 157, 277, 805, 1008
Bse21I CCTNAGG 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 140, 382, 630
BseGI GGATG 4 cut(s) 622, 670, 688, 1134
BseMII CTCAG 3 cut(s) 537, 542, 1053
BseNI ACTGG 4 cut(s) 157, 277, 805, 1008
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 582
Bsh1285I CGRYCG 2 cut(s) 36, 103
BshFI GGCC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 103
BsiEI CGRYCG 2 cut(s) 36, 103
BsiHKAI GWGCWC 1 cut(s) 887
BslFI GGGAC 2 cut(s) 104, 1072
BsmAI GTCTC 2 cut(s) 78, 1085
BsmBI CGTCTC 1 cut(s) 1085
BsmFI GGGAC 2 cut(s) 104, 1072
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 887
BspACI CCGC 1 cut(s) 1020
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 538, 541, 1054
BspDI ATCGAT 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 553
BspMI ACCTGC 1 cut(s) 945
BspPI GGATC 5 cut(s) 131, 173, 546, 559, 566
BsrI ACTGG 4 cut(s) 157, 277, 805, 1008
BssECI CCNNGG 3 cut(s) 140, 382, 630
BssSI CACGAG 3 cut(s) 88, 340, 374
BssT1I CCWWGG 1 cut(s) 140
Bst2BI CACGAG 3 cut(s) 88, 340, 374
Bst4CI ACNGT 2 cut(s) 118, 386
Bst6I CTCTTC 3 cut(s) 260, 472, 737
BstDEI CTNAG 6 cut(s) 204, 528, 546, 735, 967, 1062
BstDSI CCRYGG 1 cut(s) 382
BstF5I GGATG 4 cut(s) 622, 670, 688, 1134
BstMAI GTCTC 2 cut(s) 78, 1085
BstMCI CGRYCG 2 cut(s) 36, 103
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 582
BstV2I GAAGAC 2 cut(s) 453, 799
BstX2I RGATCY 2 cut(s) 551, 571
BstYI RGATCY 2 cut(s) 551, 571
Bsu15I ATCGAT 1 cut(s) 103
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 4 cut(s) 622, 670, 688, 1134
BtsI GCAGTG 1 cut(s) 832
BtsIMutI CAGTG 2 cut(s) 817, 832
BveI ACCTGC 1 cut(s) 945
CaiI CAGNNNCTG 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 103
Csp6I GTAC 2 cut(s) 270, 379
CviAII CATG 6 cut(s) 95, 292, 448, 711, 751, 761
CviQI GTAC 2 cut(s) 270, 379
DdeI CTNAG 6 cut(s) 204, 528, 546, 735, 967, 1062
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 260, 472, 737
EarI CTCTTC 3 cut(s) 260, 472, 737
Eco130I CCWWGG 1 cut(s) 140
Eco57I CTGAAG 2 cut(s) 181, 793
Eco81I CCTNAGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 1085
FaeI CATG 6 cut(s) 98, 295, 451, 714, 754, 764
FaqI GGGAC 2 cut(s) 104, 1072
FatI CATG 6 cut(s) 94, 291, 447, 710, 750, 760
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 596
FokI GGATG 4 cut(s) 629, 677, 695, 1141
Fsp4HI GCNGC 1 cut(s) 596
GluI GCNGC 1 cut(s) 596
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 6 cut(s) 98, 295, 451, 714, 754, 764
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 9 cut(s) 24, 105, 132, 350, 505, 515, 839, 944, 1036
HphI GGTGA 6 cut(s) 239, 326, 599, 1000, 1082, 1148
Hpy166II GTNNAC 2 cut(s) 131, 538
Hpy188I TCNGA 6 cut(s) 33, 79, 200, 361, 547, 844
Hpy188III TCNNGA 6 cut(s) 512, 983, 1088, 1099, 1147, 1176
Hpy8I GTNNAC 2 cut(s) 131, 538
Hpy99I CGWCG 4 cut(s) 41, 53, 56, 513
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 2 cut(s) 118, 386
HpyCH4V TGCA 4 cut(s) 598, 760, 940, 1052
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 6 cut(s) 204, 528, 546, 735, 967, 1062
Hsp92II CATG 6 cut(s) 98, 295, 451, 714, 754, 764
Ksp22I TGATCA 1 cut(s) 229
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 1 cut(s) 582
LweI GCATC 5 cut(s) 607, 658, 673, 721, 1039
MaeIII GTNAC 3 cut(s) 147, 512, 972
MflI RGATCY 2 cut(s) 551, 571
MhlI GDGCHC 1 cut(s) 887
MluCI AATT 7 cut(s) 73, 495, 541, 635, 1079, 1139, 1152
MlyI GAGTC 3 cut(s) 126, 509, 514
MmeI TCCRAC 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 762
MseI TTAA 5 cut(s) 20, 111, 438, 521, 797
MslI CAYNNNNRTG 1 cut(s) 755
MwoI GCNNNNNNNGC 1 cut(s) 292
NlaIII CATG 6 cut(s) 98, 295, 451, 714, 754, 764
NlaIV GGNNCC 1 cut(s) 553
NmeAIII GCCGAG 1 cut(s) 1048
NmuCI GTSAC 2 cut(s) 512, 972
NsiI ATGCAT 1 cut(s) 762
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 6 cut(s) 24, 105, 350, 839, 944, 1036
PkrI GCNGC 1 cut(s) 597
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 3 cut(s) 126, 509, 513
PpsI GAGTC 3 cut(s) 126, 509, 513
PspN4I GGNNCC 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 2 cut(s) 551, 571
PvuI CGATCG 1 cut(s) 103
RsaI GTAC 2 cut(s) 271, 380
RsaNI GTAC 2 cut(s) 270, 379
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 5 cut(s) 20, 111, 438, 521, 797
SatI GCNGC 1 cut(s) 596
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 3 cut(s) 126, 509, 514
SduI GDGCHC 1 cut(s) 887
SfaNI GCATC 5 cut(s) 607, 658, 673, 721, 1039
SfcI CTRYAG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 981, 1174
SmoI CTYRAG 2 cut(s) 981, 1174
Sse9I AATT 7 cut(s) 73, 495, 541, 635, 1079, 1139, 1152
SsiI CCGC 1 cut(s) 1020
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 118, 386
TaqI TCGA 8 cut(s) 54, 99, 103, 135, 612, 678, 769, 881
TaqII GACCGA 2 cut(s) 50, 644
TasI AATT 7 cut(s) 73, 495, 541, 635, 1079, 1139, 1152
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 6 cut(s) 24, 105, 350, 839, 944, 1036
Tru1I TTAA 5 cut(s) 20, 111, 438, 521, 797
Tru9I TTAA 5 cut(s) 20, 111, 438, 521, 797
TscAI CASTG 2 cut(s) 817, 832
TseFI GTSAC 2 cut(s) 512, 972
TseI GCWGC 1 cut(s) 595
Tsp45I GTSAC 2 cut(s) 512, 972
TspDTI ATGAA 2 cut(s) 97, 668
TspRI CASTG 2 cut(s) 817, 832
XapI RAATTY 3 cut(s) 73, 1139, 1152
XmiI GTMKAC 1 cut(s) 130
ZrmI AGTACT 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.