AT1G02230
NAC Family

NAC domain-containing protein 69-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020880
Physical Location & Seq
Reverse (-)
434965 .. 436922
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02230.1

Sequence Viewer

Length: 1080 bp
ATGATGAATCCGGTGGGTTTCAGATTCCGTCCAAACGACGAGGAGATCGTCGACCATTACCTCCGGCCAAAAAATCTCGATAGTGACACTAGCCATGTCGATGAAGTCATTAGCACAGTCGATATCTGTAGCTTCGAGCCTTGGGATTTACCTTCCAAGTCGATGATCAAATCGAGAGATGGGGTTTGGTATTTCTTTAGTGTTAAGGAGATGAAGTATAACAGAGGTGATCAACAGAGAAGAAGAACAAACTCTGGGTTTTGGAAGAAAACTGGAAAAACAATGACTGTCATGCGCAAAAGAGGAAATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTTTTTAAGAATCGAGATGGTTCAAAGACCGACTGGGTTATGCACGAGTATCACGCTACGTCCTTGTTTCCTAATCAGATGATGACGTATACAGTCTGCAAAGTTGAGTTTAAGGGTGAAGAGACAGAGATCTCTTCTTCTTCTACTGGTAGTGAAATTGAACAGATTCACTCTTTAATCCCTCTTGTGAACAGTTCTGGAGGATCTGAGGGTTCGTCGTTTCACAGCCAAGAATTACAGAATTCAAGTCAGTCTGGTGTCTTTGCTAATGTGCAGGGAGAATCTCAAATCGATGATGCAACTACACCGATTGAGGAGGAATGGAAAACATGGTTGAATAATGATGGTGATGAGCAGAGGAATATCATGTTTATGCAAGATCATCGCAGCGATTACACACCTCTAAAGTCGTTAACTGGTGTCTTCAGTGATGATAGCAGTGATGATAATGATTCTGATTTGATATCTCCTAAAACAAATTCTATTGGAACTTCGAGCACTTGTGCTAGTTTTGCTAGCTCAAATCATCAGATAGACCAAACTCAACATTCTCCTGACTCAACAGTCCAGCTAGTGTCATTAACTCAAGAGGTGAGCCAAGGTCCGGGTCAAGTGACTGTGATTCGAGAGCATAAATTGGGTGAAGAGTCTGTCAAGAAGAAAAGAGCTAGTTTCGTTTACAGGATGATACACAGATTAGTCAAGAAAATTCACCAATGTTATTCTATCTCAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

359

Amino Acids

40.9

Weight (kDa)

6.08

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 131 1.7e-40 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02220 AT1G02230 AT1G02250 AT3G04420 AT3G04420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 902
Acc16I TGCGCA 1 cut(s) 296
AccI GTMKAC 2 cut(s) 51, 428
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 3 cut(s) 580, 817, 1047
AcuI CTGAAG 1 cut(s) 748
AfiI CCNNNNNNNGG 1 cut(s) 943
AgsI TTSAA 4 cut(s) 363, 500, 585, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 4 cut(s) 132, 858, 910, 1007
AluI AGCT 4 cut(s) 132, 858, 910, 1007
Alw21I GWGCWC 1 cut(s) 839
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 550
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 726
ApoI RAATTY 3 cut(s) 580, 817, 1047
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 941
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 7 cut(s) 239, 335, 467, 698, 943, 992, 1043
AsuNHI GCTAGC 1 cut(s) 854
AvaII GGWCC 1 cut(s) 941
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 754
Bbv12I GWGCWC 1 cut(s) 839
BbvI GCAGC 1 cut(s) 738
BccI CCATC 3 cut(s) 173, 350, 677
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BclI TGATCA 2 cut(s) 165, 229
BcnI CCSGG 1 cut(s) 945
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 5 cut(s) 90, 846, 855, 911, 1008
BfmI CTRYAG 1 cut(s) 127
BglII AGATCT 1 cut(s) 468
BisI GCNGC 1 cut(s) 727
BlsI GCNGC 1 cut(s) 728
Bme1390I CCNGG 1 cut(s) 945
Bme18I GGWCC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 941
BmrFI CCNGG 1 cut(s) 945
BmrI ACTGGG 1 cut(s) 382
BmsI GCATC 1 cut(s) 625
BmtI GCTAGC 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 754
BpmI CTGGAG 1 cut(s) 558
BpuEI CTTGAG 2 cut(s) 909, 1054
BpuMI CCSGG 1 cut(s) 945
Bsa29I ATCGAT 1 cut(s) 630
BsaJI CCNNGG 2 cut(s) 140, 937
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 943
Bse1I ACTGG 4 cut(s) 277, 377, 490, 760
BseCI ATCGAT 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 140, 937
BseGI GGATG 1 cut(s) 1029
BseLI CCNNNNNNNGG 1 cut(s) 943
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 4 cut(s) 277, 377, 490, 760
BseRI GAGGAG 2 cut(s) 56, 668
BseXI GCAGC 1 cut(s) 738
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 839
BsiSI CCGG 3 cut(s) 11, 64, 944
BslI CCNNNNNNNGG 1 cut(s) 943
BsmAI GTCTC 1 cut(s) 455
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 839
Bsp143I GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 538
BspDI ATCGAT 1 cut(s) 630
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 1 cut(s) 550
BsrI ACTGG 4 cut(s) 277, 377, 490, 760
BssECI CCNNGG 2 cut(s) 140, 937
BssMI GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
BssNAI GTATAC 1 cut(s) 429
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 2 cut(s) 140, 937
Bst1107I GTATAC 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 383
Bst4CI ACNGT 6 cut(s) 118, 289, 433, 533, 904, 958
Bst6I CTCTTC 3 cut(s) 453, 478, 978
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 1029
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 7 cut(s) 48, 168, 232, 321, 471, 545, 721
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstSCI CCNGG 1 cut(s) 943
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 738
BstV2I GAAGAC 1 cut(s) 754
BstX2I RGATCY 2 cut(s) 468, 542
BstYI RGATCY 2 cut(s) 468, 542
BstZ17I GTATAC 1 cut(s) 429
Bsu15I ATCGAT 1 cut(s) 630
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 707
BtsCI GGATG 1 cut(s) 1029
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 2 cut(s) 772, 784
Cac8I GCNNGC 1 cut(s) 856
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 941
ClaI ATCGAT 1 cut(s) 630
CviAII CATG 5 cut(s) 95, 292, 669, 706, 1077
CviJI RGCY 9 cut(s) 67, 93, 132, 139, 567, 858, 910, 936, 1007
CviKI_1 RGCY 9 cut(s) 67, 93, 132, 139, 567, 858, 910, 936, 1007
DdeI CTNAG 1 cut(s) 546
DpnI GATC 7 cut(s) 47, 167, 231, 320, 470, 544, 720
DpnII GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 453, 478, 978
EarI CTCTTC 3 cut(s) 453, 478, 978
Eco130I CCWWGG 2 cut(s) 140, 937
Eco32I GATATC 2 cut(s) 124, 804
Eco47I GGWCC 1 cut(s) 941
Eco57I CTGAAG 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 580
EcoRV GATATC 2 cut(s) 124, 804
EcoT14I CCWWGG 2 cut(s) 140, 937
ErhI CCWWGG 2 cut(s) 140, 937
FaeI CATG 5 cut(s) 98, 295, 672, 709, 1080
FatI CATG 5 cut(s) 94, 291, 668, 705, 1076
FbaI TGATCA 2 cut(s) 165, 229
FblI GTMKAC 2 cut(s) 51, 428
Fnu4HI GCNGC 1 cut(s) 727
FokI GGATG 1 cut(s) 1036
Fsp4HI GCNGC 1 cut(s) 727
FspBI CTAG 5 cut(s) 90, 846, 855, 911, 1008
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 727
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 1 cut(s) 67
HapII CCGG 3 cut(s) 11, 64, 944
HhaI GCGC 1 cut(s) 297
Hin1II CATG 5 cut(s) 98, 295, 672, 709, 1080
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 52, 753
HindII GTYRAC 2 cut(s) 52, 753
HinfI GANTC 9 cut(s) 7, 24, 349, 505, 620, 791, 896, 961, 986
HpaI GTTAAC 1 cut(s) 753
HpaII CCGG 3 cut(s) 11, 64, 944
HphI GGTGA 7 cut(s) 239, 335, 467, 698, 943, 992, 1043
Hpy166II GTNNAC 5 cut(s) 52, 429, 529, 753, 1018
Hpy188I TCNGA 5 cut(s) 23, 417, 547, 796, 870
Hpy8I GTNNAC 5 cut(s) 52, 429, 529, 753, 1018
Hpy99I CGWCG 3 cut(s) 41, 53, 559
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 6 cut(s) 118, 289, 433, 533, 904, 958
HpyCH4IV ACGT 2 cut(s) 398, 425
HpyCH4V TGCA 5 cut(s) 382, 438, 613, 638, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 1 cut(s) 546
HpySE526I ACGT 2 cut(s) 398, 425
Hsp92II CATG 5 cut(s) 98, 295, 672, 709, 1080
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 2 cut(s) 165, 229
KspAI GTTAAC 1 cut(s) 753
Kzo9I GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
Lsp1109I GCAGC 1 cut(s) 738
LweI GCATC 1 cut(s) 625
MaeI CTAG 5 cut(s) 90, 846, 855, 911, 1008
MaeII ACGT 2 cut(s) 398, 425
MaeIII GTNAC 2 cut(s) 83, 952
MalI GATC 7 cut(s) 47, 167, 231, 320, 470, 544, 720
MboI GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
MflI RGATCY 2 cut(s) 468, 542
MhlI GDGCHC 1 cut(s) 839
MluCI AATT 6 cut(s) 495, 572, 580, 817, 974, 1047
MlyI GAGTC 2 cut(s) 890, 995
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 6 cut(s) 204, 345, 450, 515, 752, 920
MslI CAYNNNNRTG 2 cut(s) 99, 710
MspI CCGG 3 cut(s) 11, 64, 944
MspR9I CCNGG 1 cut(s) 945
MwoI GCNNNNNNNGC 1 cut(s) 851
NciI CCSGG 1 cut(s) 945
NdeII GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 5 cut(s) 98, 295, 672, 709, 1080
NmuCI GTSAC 2 cut(s) 83, 952
NsbI TGCGCA 1 cut(s) 296
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 7 cut(s) 7, 24, 349, 505, 620, 791, 961
PkrI GCNGC 1 cut(s) 728
PleI GAGTC 2 cut(s) 890, 994
PpsI GAGTC 2 cut(s) 890, 994
PspPI GGNCC 1 cut(s) 941
PsuI RGATCY 2 cut(s) 468, 542
RseI CAYNNNNRTG 2 cut(s) 99, 710
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 6 cut(s) 204, 345, 450, 515, 752, 920
SatI GCNGC 1 cut(s) 727
Sau3AI GATC 7 cut(s) 45, 165, 229, 318, 468, 542, 718
Sau96I GGNCC 1 cut(s) 941
SchI GAGTC 2 cut(s) 890, 995
ScrFI CCNGG 1 cut(s) 945
SduI GDGCHC 1 cut(s) 839
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 941
SmiMI CAYNNNNRTG 2 cut(s) 99, 710
SmlI CTYRAG 2 cut(s) 924, 1069
SmoI CTYRAG 2 cut(s) 924, 1069
Sse9I AATT 6 cut(s) 495, 572, 580, 817, 974, 1047
SspMI CTAG 5 cut(s) 90, 846, 855, 911, 1008
StyD4I CCNGG 1 cut(s) 943
StyI CCWWGG 2 cut(s) 140, 937
TaaI ACNGT 6 cut(s) 118, 289, 433, 533, 904, 958
TaiI ACGT 2 cut(s) 401, 428
TaqII GACCGA 1 cut(s) 383
TasI AATT 6 cut(s) 495, 572, 580, 817, 974, 1047
TfiI GAWTC 7 cut(s) 7, 24, 349, 505, 620, 791, 961
Tru1I TTAA 6 cut(s) 204, 345, 450, 515, 752, 920
Tru9I TTAA 6 cut(s) 204, 345, 450, 515, 752, 920
TscAI CASTG 2 cut(s) 772, 784
TseFI GTSAC 2 cut(s) 83, 952
TseI GCWGC 1 cut(s) 726
Tsp45I GTSAC 2 cut(s) 83, 952
TspDTI ATGAA 3 cut(s) 20, 117, 227
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 2 cut(s) 772, 784
VpaK11BI GGWCC 1 cut(s) 941
XapI RAATTY 3 cut(s) 580, 817, 1047
XmiI GTMKAC 2 cut(s) 51, 428
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 5 cut(s) 90, 846, 855, 911, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.