AT3G04420
NAC Family

NAC domain-containing protein 69-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0020880
Physical Location & Seq
Forward (+)
1172687 .. 1174508
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04420.2

Sequence Viewer

Length: 1029 bp
ATGGAGAATCCGGTGGGTTTAAGATTCCGTCCGACCGACAAGGAGATCGTCGTCGATTACCTCCGACCAAAAAACTCCGATAGGGACACGAGTCATGTTGATCGAGTCATTAGCACAGTCACTATCCGTAGCTTCGACCCTTGGGAGTTACCTTGCCAGTCTAGGATCAAACTGAAAGATGAGTCTTGGTGTTTCTTCAGCCCTAAGGAGAACAAATATGGCAGAGGTGATCAACAAATTAGAAAAACGAAATCTGGTTACTGGAAGATTACTGGCAAACCAAAGCCTATCTTGCGTAACCGCCAAGAGATCGGTGAGAAAAAGGTTTTGATGTTTTACATGAGTAAGGAACTTGGTGGATCCAAATCCGACTGGGTTATGCACGAGTACCATGCTTTCTCTCCTACTCAGATGATGATGACATATACAATATGTAAAGTTATGTTTAAGGGTGACGTGAGAGAGATTTCTTCTTCTTCTGCTTCTTATGGTAGTGAAATTGAGCAGAGTCGTGACTCTTTAATCCCTCTTCTTGTGAACGATTCTGAGGAAGAAGCTCAAATCGAGGATGCTATACCAATAGAGGAATGGGAAACATGGTTGACTGATGATGGTGTTGATGAGCAGGTGAATCATATTATGAATATGAAAGATGATCGCAACAACCACAGGCCTCAAAAGCCATTGACTGGTGTCTTGATTGACGATAGTAGTGATGATGATGATGATTCTGATTTGCTATCTCCAACAACAAATTCTATTGAAAATTCGAGCACTTGTGATAGTTTTGGTAGCTCAGACCAAATCAACTTAGTGTCACTAACTCAAGAGGTGAGCCAAGCTCTGATAACCAGTATTGATACACCCGAGAAGATTAAGAGTCCTTATGATGATGCACAAGGGACTGGGGCTGGAGGGCAAAAATTGGGTCAAGAGACTCGAGAGAAGAAACGAGCTGGTTTCTTTCACAGGATGATACAAATATTCGTCAAGAAAATTCACCAATGTTCTTCTATCTCAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

342

Amino Acids

39.04

Weight (kDa)

5.26

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 131 3.3e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02220 AT1G02230 AT1G02250 AT3G04420 AT3G04420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 616
Acc36I ACCTGC 1 cut(s) 616
AccB7I CCANNNNNTGG 1 cut(s) 689
AciI CCGC 1 cut(s) 301
AclWI GGATC 3 cut(s) 173, 354, 367
AcsI RAATTY 3 cut(s) 754, 766, 996
AcuI CTGAAG 1 cut(s) 181
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 689
AgsI TTSAA 1 cut(s) 764
AjiI CACGTC 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 739, 771
AluBI AGCT 5 cut(s) 132, 557, 795, 842, 956
AluI AGCT 5 cut(s) 132, 557, 795, 842, 956
Alw21I GWGCWC 1 cut(s) 776
Alw26I GTCTC 1 cut(s) 929
AlwI GGATC 3 cut(s) 173, 354, 367
Ama87I CYCGRG 2 cut(s) 866, 939
AoxI GGCC 1 cut(s) 671
ApoI RAATTY 3 cut(s) 754, 766, 996
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AsuHPI GGTGA 6 cut(s) 239, 326, 464, 640, 844, 992
AvaI CYCGRG 2 cut(s) 866, 939
AxyI CCTNAGG 1 cut(s) 204
BamHI GGATCC 1 cut(s) 359
BauI CACGAG 2 cut(s) 88, 383
Bbv12I GWGCWC 1 cut(s) 776
BccI CCATC 1 cut(s) 605
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 929
BfaI CTAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 616
BmeT110I CYCGRG 2 cut(s) 866, 939
BmgBI CACGTC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 361
BmrI ACTGGG 2 cut(s) 382, 915
BmsI GCATC 2 cut(s) 559, 883
BmuI ACTGGG 2 cut(s) 382, 915
BoxI GACNNNNGTC 2 cut(s) 90, 692
BplI GAGNNNNNCTC 2 cut(s) 826, 858
BpmI CTGGAG 1 cut(s) 933
BpuEI CTTGAG 2 cut(s) 810, 1003
BsaBI GATNNNNATC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 689
Bse1I ACTGG 7 cut(s) 157, 266, 277, 377, 694, 852, 910
Bse21I CCTNAGG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 574, 978
BseJI GATNNNNATC 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 689
BseMII CTCAG 3 cut(s) 422, 537, 810
BseNI ACTGG 7 cut(s) 157, 266, 277, 377, 694, 852, 910
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 673
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 776
BsiHKCI CYCGRG 2 cut(s) 866, 939
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 2 cut(s) 98, 916
BslI CCNNNNNNNGG 1 cut(s) 689
BsmAI GTCTC 1 cut(s) 929
BsmFI GGGAC 2 cut(s) 98, 916
BsnI GGCC 1 cut(s) 673
BsoBI CYCGRG 2 cut(s) 866, 939
Bsp1286I GDGCHC 1 cut(s) 776
Bsp143I GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
BspACI CCGC 1 cut(s) 301
BspANI GGCC 1 cut(s) 673
BspCNI CTCAG 3 cut(s) 421, 538, 809
BspLI GGNNCC 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 3 cut(s) 173, 354, 367
BsrI ACTGG 7 cut(s) 157, 266, 277, 377, 694, 852, 910
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
BssSI CACGAG 2 cut(s) 88, 383
BssT1I CCWWGG 1 cut(s) 140
Bst2BI CACGAG 2 cut(s) 88, 383
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 534
BstDEI CTNAG 5 cut(s) 204, 408, 546, 796, 811
BstF5I GGATG 2 cut(s) 574, 978
BstKTI GATC 7 cut(s) 48, 103, 168, 232, 312, 362, 658
BstMAI GTCTC 1 cut(s) 929
BstMBI GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 2 cut(s) 292, 679
BstPAI GACNNNNGTC 2 cut(s) 90, 692
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 673
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 574, 978
BveI ACCTGC 1 cut(s) 616
Csp6I GTAC 1 cut(s) 388
CviAII CATG 4 cut(s) 95, 340, 392, 597
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 5 cut(s) 204, 408, 546, 796, 811
DpnI GATC 7 cut(s) 47, 102, 167, 231, 311, 361, 657
DpnII GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 204
Eco88I CYCGRG 2 cut(s) 866, 939
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 4 cut(s) 98, 343, 395, 600
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 2 cut(s) 98, 916
FatI CATG 4 cut(s) 94, 339, 391, 596
FbaI TGATCA 1 cut(s) 229
FokI GGATG 2 cut(s) 581, 985
FspBI CTAG 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 1 cut(s) 673
HapII CCGG 1 cut(s) 11
Hin1II CATG 4 cut(s) 98, 343, 395, 600
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HpaII CCGG 1 cut(s) 11
HphI GGTGA 6 cut(s) 239, 326, 464, 640, 844, 992
Hpy166II GTNNAC 2 cut(s) 538, 603
Hpy188I TCNGA 9 cut(s) 33, 65, 79, 370, 411, 547, 733, 799, 846
Hpy188III TCNNGA 7 cut(s) 512, 697, 827, 932, 941, 991, 1020
Hpy8I GTNNAC 2 cut(s) 538, 603
Hpy99I CGWCG 2 cut(s) 53, 56
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 2 cut(s) 382, 896
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 679
HpyF3I CTNAG 5 cut(s) 204, 408, 546, 796, 811
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 4 cut(s) 98, 343, 395, 600
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
LweI GCATC 2 cut(s) 559, 883
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 7 cut(s) 118, 147, 257, 296, 452, 512, 816
MalI GATC 7 cut(s) 47, 102, 167, 231, 311, 361, 657
MboI GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 776
MluCI AATT 6 cut(s) 237, 498, 754, 766, 923, 996
MlyI GAGTC 7 cut(s) 100, 114, 191, 509, 517, 889, 931
MmeI TCCRAC 4 cut(s) 56, 88, 393, 770
MnlI CCTC 9 cut(s) 71, 218, 537, 541, 559, 577, 684, 823, 908
MseI TTAA 4 cut(s) 20, 447, 521, 876
MspI CCGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 292, 679
NdeII GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
NlaIII CATG 4 cut(s) 98, 343, 395, 600
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 4 cut(s) 118, 452, 512, 816
PaeR7I CTCGAG 1 cut(s) 939
PaqCI CACCTGC 1 cut(s) 616
PceI AGGCCT 1 cut(s) 673
PfeI GAWTC 5 cut(s) 7, 24, 542, 631, 728
PflMI CCANNNNNTGG 1 cut(s) 689
PleI GAGTC 7 cut(s) 99, 113, 190, 509, 516, 888, 931
PpsI GAGTC 7 cut(s) 99, 113, 190, 509, 516, 888, 931
PshAI GACNNNNGTC 2 cut(s) 90, 692
PspN4I GGNNCC 1 cut(s) 361
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 4 cut(s) 20, 447, 521, 876
Sau3AI GATC 7 cut(s) 45, 100, 165, 229, 309, 359, 655
SchI GAGTC 7 cut(s) 100, 114, 191, 509, 517, 889, 931
SduI GDGCHC 1 cut(s) 776
SfaNI GCATC 2 cut(s) 559, 883
Sfr274I CTCGAG 1 cut(s) 939
SlaI CTCGAG 1 cut(s) 939
SmlI CTYRAG 3 cut(s) 825, 939, 1018
SmoI CTYRAG 3 cut(s) 825, 939, 1018
Sse9I AATT 6 cut(s) 237, 498, 754, 766, 923, 996
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 1 cut(s) 301
SspI AATATT 1 cut(s) 984
SspMI CTAG 1 cut(s) 162
StuI AGGCCT 1 cut(s) 673
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 1 cut(s) 459
TaqI TCGA 6 cut(s) 54, 103, 135, 564, 770, 940
TaqII GACCGA 1 cut(s) 50
TasI AATT 6 cut(s) 237, 498, 754, 766, 923, 996
TfiI GAWTC 5 cut(s) 7, 24, 542, 631, 728
Tru1I TTAA 4 cut(s) 20, 447, 521, 876
Tru9I TTAA 4 cut(s) 20, 447, 521, 876
TseFI GTSAC 4 cut(s) 118, 452, 512, 816
Tsp45I GTSAC 4 cut(s) 118, 452, 512, 816
TspDTI ATGAA 2 cut(s) 656, 662
TspGWI ACGGA 2 cut(s) 17, 116
Van91I CCANNNNNTGG 1 cut(s) 689
XapI RAATTY 3 cut(s) 754, 766, 996
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 939
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.