AT1G02250
NAC Family

NAC domain-containing protein 69-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020880
Physical Location & Seq
Reverse (-)
437860 .. 439559
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02250.1

Sequence Viewer

Length: 1089 bp
ATGGCGAATCCGGTGGGTTTTAGATTCCGTCCGACTGACGGGGAGATCGTCGACATTTACCTCCGACCGAAAAATCTCGAAAGTAACACGAGCCATGTCGATGAAGTCATTAGCACAGTTGATATTTGTAGCTTCGACCCTTGGGACTTACCTTCCCATTCTAGGATGAAAACAAGAGATCAGGTTTGGTATTTCTTCGGCCGTAAGGAGAACAAATATGGTAAAGGTGATCGACAGATAAGAAAAACCAAGTCTGGTTTTTGGAAGAAAACTGGCGTTACCATGGATATAATGCGCAAAACGGGAGATCGTGAGAAGATCGGTGAGAAAAGGGTTTTGGTGTTTAAGAATCACGGTGGTTCCAAGTCCGATTGGGCTATGCATGAGTATCACGCTACGTTCTCGTCTCCTAATCAGATAATGACATACACACTCTGCAAAGTTAAGTTTAAGGGTGAAAGGAGAGAATTTTCAGTTGCTACTGGTAGTGGAATTAAGCATACTCACTCTTTAATCCCTCCTACCAACAATTCTGGAGTTTTGAGTGTAGAGACAGAGGGATCGTTGTTTCACAGCCAAGAATCACAGAATCCAAGTCAGTTTTCTGGCTTTCTTGATGTGGATGCACTAGATAGGGACTTCTGCAATATTTTGAGTGATGATTTCAAAGGCTTCTTTAATGATGACGATGAGCAGAGTAAGATTGTTTCTATGCAAGATGATCGCAACAACCACACACCTCAAAAGCCATTGACCGGTGTCTTCAGTGATCATAGCACCGATGGTAGTGATTCTGATCCGATTTCTGCAACAACTATTTCCATTCAAACTTTAAGCACTTGTCCTAGTTTTGGTAGCTCAAATCCTCTATACCAAATCACTGACTTGCAGGAATCTCCTAACTCAATCAAGTTAGTGTCATTAGCTCAAGAGGTGAGCAAAACACCGGGAACCGGTATTGATAATGATGCACAAGGGACTGAGATTGGTGAGCATAAATTGGGTCAAGAGACGATCAAGAACAAAAGAGCTGGTTTCTTTCACAGGATGATACAAAAATTCGTCAAGAAAATTCACCTAAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

362

Amino Acids

40.8

Weight (kDa)

7.22

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 131 3e-37 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02220 AT1G02230 AT1G02250 AT3G04420 AT3G04420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 296
AccI GTMKAC 1 cut(s) 51
AclWI GGATC 2 cut(s) 568, 791
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 3 cut(s) 467, 1058, 1071
AcuI CTGAAG 1 cut(s) 748
AfiI CCNNNNNNNGG 5 cut(s) 38, 162, 755, 851, 953
AgeI ACCGGT 2 cut(s) 755, 953
AgsI TTSAA 2 cut(s) 667, 827
AjuI GAANNNNNNNTTGG 4 cut(s) 320, 352, 586, 618
AluBI AGCT 4 cut(s) 132, 858, 926, 1031
AluI AGCT 4 cut(s) 132, 858, 926, 1031
Alw26I GTCTC 3 cut(s) 411, 545, 1004
AlwI GGATC 2 cut(s) 568, 791
AoxI GGCC 1 cut(s) 199
ApoI RAATTY 3 cut(s) 467, 1058, 1071
AsiGI ACCGGT 2 cut(s) 755, 953
AspLEI GCGC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 948
AsuHPI GGTGA 6 cut(s) 239, 335, 467, 946, 1001, 1067
BauI CACGAG 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 754
BccI CCATC 1 cut(s) 776
BceAI ACGGC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BclI TGATCA 1 cut(s) 769
BcnI CCSGG 1 cut(s) 948
BcoDI GTCTC 3 cut(s) 411, 545, 1004
BfaI CTAG 3 cut(s) 162, 629, 846
Bme1390I CCNGG 1 cut(s) 948
BmiI GGNNCC 2 cut(s) 361, 952
BmrFI CCNGG 1 cut(s) 948
BmsI GCATC 2 cut(s) 613, 958
BoxI GACNNNNGTC 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 754
BpmI CTGGAG 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 948
BsaBI GATNNNNATC 1 cut(s) 795
BsaJI CCNNGG 2 cut(s) 140, 282
BsaWI WCCGGW 3 cut(s) 10, 755, 953
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 162, 755, 851, 953
Bse118I RCCGGY 2 cut(s) 755, 953
Bse1I ACTGG 2 cut(s) 277, 487
Bse8I GATNNNNATC 1 cut(s) 795
BseDI CCNNGG 2 cut(s) 140, 282
BseGI GGATG 3 cut(s) 171, 628, 1053
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 5 cut(s) 38, 162, 755, 851, 953
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 2 cut(s) 277, 487
BseX3I CGGCCG 1 cut(s) 199
Bsh1285I CGRYCG 2 cut(s) 68, 202
BshFI GGCC 1 cut(s) 201
BshTI ACCGGT 2 cut(s) 755, 953
BsiEI CGRYCG 2 cut(s) 68, 202
BsiSI CCGG 4 cut(s) 11, 756, 947, 954
BslFI GGGAC 3 cut(s) 158, 650, 991
BslI CCNNNNNNNGG 5 cut(s) 38, 162, 755, 851, 953
BsmAI GTCTC 3 cut(s) 411, 545, 1004
BsmBI CGTCTC 2 cut(s) 411, 1004
BsmFI GGGAC 3 cut(s) 158, 650, 991
BsnI GGCC 1 cut(s) 201
Bsp19I CCATGG 1 cut(s) 282
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 973
BspLI GGNNCC 2 cut(s) 361, 952
BspPI GGATC 2 cut(s) 568, 791
BsrFI RCCGGY 2 cut(s) 755, 953
BsrI ACTGG 2 cut(s) 277, 487
BssAI RCCGGY 2 cut(s) 755, 953
BssECI CCNNGG 2 cut(s) 140, 282
BssSI CACGAG 1 cut(s) 88
BssT1I CCWWGG 2 cut(s) 140, 282
Bst2BI CACGAG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 118, 356
BstDEI CTNAG 2 cut(s) 981, 1079
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 3 cut(s) 171, 628, 1053
BstHHI GCGC 1 cut(s) 297
BstMAI GTCTC 3 cut(s) 411, 545, 1004
BstMCI CGRYCG 2 cut(s) 68, 202
BstPAI GACNNNNGTC 1 cut(s) 758
BstSCI CCNGG 1 cut(s) 946
BstV2I GAAGAC 1 cut(s) 754
BstZI CGGCCG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 3 cut(s) 171, 628, 1053
BtsIMutI CAGTG 2 cut(s) 772, 879
CfoI GCGC 1 cut(s) 297
Cfr10I RCCGGY 2 cut(s) 755, 953
CspAI ACCGGT 2 cut(s) 755, 953
CviAII CATG 4 cut(s) 95, 283, 383, 1086
DdeI CTNAG 2 cut(s) 981, 1079
EaeI YGGCCR 1 cut(s) 199
EagI CGGCCG 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 140, 282
Eco52I CGGCCG 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 140, 282
EcoT22I ATGCAT 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 140, 282
Esp3I CGTCTC 2 cut(s) 411, 1004
FaeI CATG 4 cut(s) 98, 286, 386, 1089
FaqI GGGAC 3 cut(s) 158, 650, 991
FatI CATG 4 cut(s) 94, 282, 382, 1085
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 51
FokI GGATG 3 cut(s) 178, 635, 1060
FspBI CTAG 3 cut(s) 162, 629, 846
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 555
HaeIII GGCC 1 cut(s) 201
HapII CCGG 4 cut(s) 11, 756, 947, 954
HhaI GCGC 1 cut(s) 297
Hin1II CATG 4 cut(s) 98, 286, 386, 1089
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 7 cut(s) 7, 24, 349, 581, 589, 791, 893
HpaII CCGG 4 cut(s) 11, 756, 947, 954
HphI GGTGA 6 cut(s) 239, 335, 467, 946, 1001, 1067
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 6 cut(s) 33, 65, 370, 417, 796, 801
Hpy188III TCNNGA 8 cut(s) 77, 311, 534, 614, 929, 1007, 1018, 1066
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 118, 356
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 8 cut(s) 382, 438, 626, 645, 715, 809, 889, 971
HpyF3I CTNAG 2 cut(s) 981, 1079
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 4 cut(s) 98, 286, 386, 1089
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 769
LweI GCATC 2 cut(s) 613, 958
MaeI CTAG 3 cut(s) 162, 629, 846
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 83, 277
MboII GAAGA 4 cut(s) 187, 277, 328, 754
MluCI AATT 6 cut(s) 467, 492, 529, 998, 1058, 1071
MmeI TCCRAC 2 cut(s) 56, 88
MnlI CCTC 6 cut(s) 71, 528, 550, 750, 876, 925
Mph1103I ATGCAT 1 cut(s) 384
MseI TTAA 7 cut(s) 345, 444, 450, 495, 512, 678, 833
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 4 cut(s) 11, 756, 947, 954
MspR9I CCNGG 1 cut(s) 948
NciI CCSGG 1 cut(s) 948
NcoI CCATGG 1 cut(s) 282
NlaIII CATG 4 cut(s) 98, 286, 386, 1089
NlaIV GGNNCC 2 cut(s) 361, 952
NsbI TGCGCA 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 7 cut(s) 7, 24, 349, 581, 589, 791, 893
PinAI ACCGGT 2 cut(s) 755, 953
PshAI GACNNNNGTC 1 cut(s) 758
PspN4I GGNNCC 2 cut(s) 361, 952
RseI CAYNNNNRTG 1 cut(s) 99
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 7 cut(s) 345, 444, 450, 495, 512, 678, 833
ScrFI CCNGG 1 cut(s) 948
SfaNI GCATC 2 cut(s) 613, 958
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 927
SmoI CTYRAG 1 cut(s) 927
Sse9I AATT 6 cut(s) 467, 492, 529, 998, 1058, 1071
SspI AATATT 1 cut(s) 649
SspMI CTAG 3 cut(s) 162, 629, 846
StyD4I CCNGG 1 cut(s) 946
StyI CCWWGG 2 cut(s) 140, 282
TaaI ACNGT 2 cut(s) 118, 356
TaiI ACGT 1 cut(s) 401
TaqI TCGA 5 cut(s) 51, 78, 99, 135, 232
TaqII GACCGA 1 cut(s) 82
TasI AATT 6 cut(s) 467, 492, 529, 998, 1058, 1071
TfiI GAWTC 7 cut(s) 7, 24, 349, 581, 589, 791, 893
Tru1I TTAA 7 cut(s) 345, 444, 450, 495, 512, 678, 833
Tru9I TTAA 7 cut(s) 345, 444, 450, 495, 512, 678, 833
TscAI CASTG 2 cut(s) 772, 886
TspDTI ATGAA 2 cut(s) 117, 182
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 2 cut(s) 772, 886
XapI RAATTY 3 cut(s) 467, 1058, 1071
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 3 cut(s) 162, 629, 846
Zsp2I ATGCAT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.