AT1G05205

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016148
Physical Location & Seq
Reverse (-)
1509103 .. 1510341
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05205.1

Sequence Viewer

Length: 276 bp
ATGAGCGAGACGAGACCAGTGCCGAGGAGAGAGAGTCCATGGGGTTTACCGGAAGGTCACCGTGAGCCCAAAGCTCACCGCTGCAACGATCGTGTTGAAGACGTTATCCAGGCGTTATTCGAGGGAAACCCATTCAAGACAGTTCCAGGACCTTTCAAACTCTTCTACCGATGTATGCGCTCTAAGCCAGGAGAGGAGCCAACAGAGCCATTCAAATACCTCGACCTGGAACCTCCAAAGAGAGAAGTTAAACTTGAAGAAGCAAAGCTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.68

Weight (kDa)

6.75

Isoelectric Point (pI)

68.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05205
fragaria_vesca FvH4_6g43320
malus_domestica MD09G1069700.v1.1 MD17G1095900.v1.1
prunus_persica Prupe.3G218000_v2.0.a1
pyrus_communis pycom09g02980
rosa_chinensis RchiOBHm_Chr2g0159651
rosa_multiflora Rmu_sc0011502.1_g000007
rosa_roxburghii Rroxscaffold_2G00090350
rosa_rugosa Rorug02G0477500
rosa_samantha Rh2AG544400 Rh2BG557200 Rh2CG527500 Rh2DG566300
rosa_wichuraiana Rw2G045020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 5 cut(s) 98, 136, 157, 214, 257
AjnI CCWGG 4 cut(s) 108, 145, 187, 225
AluBI AGCT 2 cut(s) 74, 268
AluI AGCT 2 cut(s) 74, 268
Alw26I GTCTC 2 cut(s) 2, 7
ApeKI GCWGC 1 cut(s) 81
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 50, 68
AvaII GGWCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 68
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 4 cut(s) 110, 147, 189, 227
BcoDI GTCTC 2 cut(s) 2, 7
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 4 cut(s) 110, 147, 189, 227
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 198, 231
BmrFI CCNGG 4 cut(s) 110, 147, 189, 227
BpiI GAAGAC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 23, 38
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 4 cut(s) 110, 147, 189, 227
BseDI CCNNGG 2 cut(s) 23, 38
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 2 cut(s) 40, 209
BseXI GCAGC 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 2, 7
BsmBI CGTCTC 1 cut(s) 2
Bso31I GGTCTC 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 198, 231
BspTNI GGTCTC 1 cut(s) 7
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 23, 38
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 4 cut(s) 110, 147, 189, 227
Bst4CI ACNGT 2 cut(s) 62, 142
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 56
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 2, 7
BstMBI GATC 1 cut(s) 88
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 2 cut(s) 184, 205
BstNI CCWGG 4 cut(s) 110, 147, 189, 227
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 4 cut(s) 108, 145, 187, 225
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 24
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 149
CviAII CATG 1 cut(s) 39
CviJI RGCY 6 cut(s) 67, 74, 187, 199, 208, 268
CviKI_1 RGCY 6 cut(s) 67, 74, 187, 199, 208, 268
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 56
EcoRII CCWGG 4 cut(s) 108, 145, 187, 225
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 1 cut(s) 42
FaiI YATR 2 cut(s) 40, 176
FalI AAGNNNNNCTT 3 cut(s) 237, 269, 252
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 82
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 82
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 42
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 50, 68
Hpy166II GTNNAC 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 62, 142
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 2 cut(s) 184, 205
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 42
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 68
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 110, 154, 269
MhlI GDGCHC 1 cut(s) 69
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 5 cut(s) 18, 115, 187, 230, 243
MseI TTAA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 4 cut(s) 110, 147, 189, 227
MvaI CCWGG 4 cut(s) 110, 147, 189, 227
MwoI GCNNNNNNNGC 2 cut(s) 184, 205
NcoI CCATGG 1 cut(s) 38
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 42
NlaIV GGNNCC 2 cut(s) 198, 231
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 1 cut(s) 83
Ple19I CGATCG 1 cut(s) 91
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 4 cut(s) 108, 145, 187, 225
PspEI GGTNACC 1 cut(s) 56
PspGI CCWGG 4 cut(s) 108, 145, 187, 225
PspN4I GGNNCC 2 cut(s) 198, 231
PspPI GGNCC 1 cut(s) 149
PspPPI RGGWCCY 1 cut(s) 149
PvuI CGATCG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 4 cut(s) 110, 147, 189, 227
SduI GDGCHC 1 cut(s) 69
SetI ASST 8 cut(s) 58, 76, 105, 154, 222, 228, 235, 270
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SsiI CCGC 1 cut(s) 79
StyD4I CCNGG 4 cut(s) 108, 145, 187, 225
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 2 cut(s) 62, 142
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 120, 222
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 56
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.