pycom09g02980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016148
Physical Location & Seq
Forward (+)
2198055 .. 2199768
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02980.2

Sequence Viewer

Length: 264 bp
ATGAGCGAGACTCGACCGGTGCCAAGGAGAGAGAGCCCATGGGGGAGGCCGGAGGGAGATCATCGCGAACCGAAGGCCCACCGCTGCAATGACCGGGCGGAGGACGTGATCCAGGCTTGTTTTGAGGGAAACCCATTTAAGACTGTTCCGGGGCCATTTAAGCTCTTCTGGCAGTGCATGCGATCAAAACCCGGGGAGGAACCAACAGAGCCATTTACATATTTGCAGCTGGATCCCCCAACAAGAGAGGTGAAACTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF629

Protein Analysis

88

Amino Acids

10.17

Weight (kDa)

6.13

Isoelectric Point (pI)

70.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05205
fragaria_vesca FvH4_6g43320
malus_domestica MD09G1069700.v1.1 MD17G1095900.v1.1
prunus_persica Prupe.3G218000_v2.0.a1
pyrus_communis pycom09g02980
rosa_chinensis RchiOBHm_Chr2g0159651
rosa_multiflora Rmu_sc0011502.1_g000007
rosa_roxburghii Rroxscaffold_2G00090350
rosa_rugosa Rorug02G0477500
rosa_samantha Rh2AG544400 Rh2BG557200 Rh2CG527500 Rh2DG566300
rosa_wichuraiana Rw2G045020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 82, 98
AclWI GGATC 3 cut(s) 103, 227, 240
AfiI CCNNNNNNNGG 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 16
AjiI CACGTC 1 cut(s) 106
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 163, 229
AluI AGCT 2 cut(s) 163, 229
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 3 cut(s) 103, 227, 240
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 3 cut(s) 47, 75, 152
ApeKI GCWGC 2 cut(s) 84, 226
AsiGI ACCGGT 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 76, 152
AsuC2I CCSGG 4 cut(s) 95, 150, 192, 193
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 191
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 71, 238
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 4 cut(s) 95, 150, 192, 193
BcoDI GTCTC 1 cut(s) 2
BisI GCNGC 2 cut(s) 85, 227
BlsI GCNGC 2 cut(s) 86, 228
Bme1390I CCNGG 5 cut(s) 95, 113, 150, 192, 193
BmeT110I CYCGRG 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 76, 152
BmiI GGNNCC 4 cut(s) 21, 153, 201, 234
BmrFI CCNGG 5 cut(s) 95, 113, 150, 192, 193
BplI GAGNNNNNCTC 1 cut(s) 27
BpuMI CCSGG 4 cut(s) 95, 150, 192, 193
BsaJI CCNNGG 5 cut(s) 23, 38, 149, 191, 192
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 5 cut(s) 23, 38, 149, 191, 192
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 71, 238
Bsh1236I CGCG 1 cut(s) 66
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 49, 77, 154
BshNI GGYRCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 5 cut(s) 17, 50, 94, 149, 192
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 3 cut(s) 49, 77, 154
BsoBI CYCGRG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 4 cut(s) 58, 108, 182, 232
Bsp19I CCATGG 1 cut(s) 38
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 2 cut(s) 82, 98
BspANI GGCC 3 cut(s) 49, 77, 154
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 4 cut(s) 21, 153, 201, 234
BspPI GGATC 3 cut(s) 103, 227, 240
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 5 cut(s) 23, 38, 149, 191, 192
BssMI GATC 4 cut(s) 58, 108, 182, 232
BssT1I CCWWGG 2 cut(s) 23, 38
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 4 cut(s) 61, 111, 185, 235
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 4 cut(s) 58, 108, 182, 232
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 3 cut(s) 160, 169, 178
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 5 cut(s) 93, 111, 148, 190, 191
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 71, 238
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 3 cut(s) 49, 77, 154
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 47
BtrI CACGTC 1 cut(s) 106
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 179
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 76, 152
Cfr9I CCCGGG 1 cut(s) 191
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 2 cut(s) 39, 178
CviJI RGCY 8 cut(s) 36, 49, 77, 116, 154, 163, 211, 229
CviKI_1 RGCY 8 cut(s) 36, 49, 77, 116, 154, 163, 211, 229
DpnI GATC 4 cut(s) 60, 110, 184, 234
DpnII GATC 4 cut(s) 58, 108, 182, 232
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 23, 38
Eco24I GRGCYC 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 2 cut(s) 23, 38
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 2 cut(s) 23, 38
FaeI CATG 2 cut(s) 42, 181
FaiI YATR 3 cut(s) 40, 179, 220
FatI CATG 2 cut(s) 38, 177
Fnu4HI GCNGC 2 cut(s) 85, 227
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 85, 227
GluI GCNGC 2 cut(s) 85, 227
HaeIII GGCC 3 cut(s) 49, 77, 154
HapII CCGG 5 cut(s) 17, 50, 94, 149, 192
Hin1II CATG 2 cut(s) 42, 181
HinfI GANTC 1 cut(s) 10
HpaII CCGG 5 cut(s) 17, 50, 94, 149, 192
HphI GGTGA 1 cut(s) 262
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 87, 177, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 169, 178
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 2 cut(s) 42, 181
Kzo9I GATC 4 cut(s) 58, 108, 182, 232
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 30, 63, 98, 107, 125, 154, 162, 205, 215
Lsp1109I GCAGC 2 cut(s) 71, 238
MaeII ACGT 1 cut(s) 105
MalI GATC 4 cut(s) 60, 110, 184, 234
MboI GATC 4 cut(s) 58, 108, 182, 232
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 6 cut(s) 39, 46, 94, 118, 190, 241
MseI TTAA 2 cut(s) 138, 159
MspA1I CMGCKG 2 cut(s) 84, 229
MspI CCGG 5 cut(s) 17, 50, 94, 149, 192
MspR9I CCNGG 5 cut(s) 95, 113, 150, 192, 193
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 3 cut(s) 160, 169, 178
NciI CCSGG 4 cut(s) 95, 150, 192, 193
NcoI CCATGG 1 cut(s) 38
NdeII GATC 4 cut(s) 58, 108, 182, 232
NlaIII CATG 2 cut(s) 42, 181
NlaIV GGNNCC 4 cut(s) 21, 153, 201, 234
NruI TCGCGA 1 cut(s) 66
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 170
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 2 cut(s) 86, 228
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 4 cut(s) 21, 153, 201, 234
PspPI GGNCC 2 cut(s) 76, 152
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 229
RruI TCGCGA 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 138, 159
SatI GCNGC 2 cut(s) 85, 227
Sau3AI GATC 4 cut(s) 58, 108, 182, 232
Sau96I GGNCC 2 cut(s) 76, 152
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 5 cut(s) 95, 113, 150, 192, 193
SduI GDGCHC 1 cut(s) 38
SetI ASST 4 cut(s) 108, 165, 231, 252
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SphI GCATGC 1 cut(s) 181
SsiI CCGC 2 cut(s) 82, 98
StyD4I CCNGG 5 cut(s) 93, 111, 148, 190, 191
StyI CCWWGG 2 cut(s) 23, 38
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 13
Tru1I TTAA 2 cut(s) 138, 159
Tru9I TTAA 2 cut(s) 138, 159
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 84, 226
TspMI CCCGGG 1 cut(s) 191
TspRI CASTG 1 cut(s) 179
XceI RCATGY 1 cut(s) 181
XmaI CCCGGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.