Prupe.3G218000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016148
Physical Location & Seq
Reverse (-)
21987849 .. 21989778
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G218000.1

Sequence Viewer

Length: 264 bp
ATGAGCGAGACTCGACCGGTGCCAAGGAGAGAGAGCCCATGGGGGAGGCCAGAGGGAGATCATCGTGAACCTAAGGCCCATCGCTGCAATGACCGAGCCGAGGACGTCATCCAAGCTTGTTTTGAGGGCAACCCATTTAAGACAGTTCCAGGGCCATTTAAGCTCTTCTGGCAGTGCATGCGATCCAAGCCTGGGGAGGAACCAACAGAGCCATATACATATTTGCAGCTGGATCCCCCGACTAGAGAGGTGAAACTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF629

Protein Analysis

88

Amino Acids

10.18

Weight (kDa)

6.13

Isoelectric Point (pI)

67.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05205
fragaria_vesca FvH4_6g43320
malus_domestica MD09G1069700.v1.1 MD17G1095900.v1.1
prunus_persica Prupe.3G218000_v2.0.a1
pyrus_communis pycom09g02980
rosa_chinensis RchiOBHm_Chr2g0159651
rosa_multiflora Rmu_sc0011502.1_g000007
rosa_roxburghii Rroxscaffold_2G00090350
rosa_rugosa Rorug02G0477500
rosa_samantha Rh2AG544400 Rh2BG557200 Rh2CG527500 Rh2DG566300
rosa_wichuraiana Rw2G045020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 19
AclWI GGATC 3 cut(s) 177, 227, 240
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 100, 192
AgeI ACCGGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 148, 190
AluBI AGCT 3 cut(s) 116, 163, 229
AluI AGCT 3 cut(s) 116, 163, 229
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 3 cut(s) 177, 227, 240
AoxI GGCC 3 cut(s) 47, 75, 152
ApeKI GCWGC 2 cut(s) 84, 226
AsiGI ACCGGT 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 76, 152
AsuHPI GGTGA 1 cut(s) 262
AxyI CCTNAGG 1 cut(s) 72
BamHI GGATCC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 71, 238
BccI CCATC 1 cut(s) 87
BciT130I CCWGG 2 cut(s) 150, 192
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 85, 227
BlsI GCNGC 2 cut(s) 86, 228
Bme1390I CCNGG 2 cut(s) 150, 192
BmgT120I GGNCC 2 cut(s) 76, 152
BmiI GGNNCC 3 cut(s) 21, 201, 234
BmrFI CCNGG 2 cut(s) 150, 192
BplI GAGNNNNNCTC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 5 cut(s) 23, 38, 99, 149, 191
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 192
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 261
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 2 cut(s) 150, 192
BseDI CCNNGG 5 cut(s) 23, 38, 99, 149, 191
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 100, 192
BseMI GCAATG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 71, 238
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 49, 77, 154
BshNI GGYRCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 17
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 100, 192
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 3 cut(s) 49, 77, 154
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 3 cut(s) 58, 182, 232
Bsp19I CCATGG 1 cut(s) 38
BspANI GGCC 3 cut(s) 49, 77, 154
BspLI GGNNCC 3 cut(s) 21, 201, 234
BspPI GGATC 3 cut(s) 177, 227, 240
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 5 cut(s) 23, 38, 99, 149, 191
BssMI GATC 3 cut(s) 58, 182, 232
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 23, 38
Bst2UI CCWGG 2 cut(s) 150, 192
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 3 cut(s) 61, 185, 235
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 3 cut(s) 58, 182, 232
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 4 cut(s) 160, 169, 178, 187
BstNI CCWGG 2 cut(s) 150, 192
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 148, 190
BstV1I GCAGC 2 cut(s) 71, 238
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 72
BsuRI GGCC 3 cut(s) 49, 77, 154
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 179
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 76, 152
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 2 cut(s) 39, 178
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 60, 184, 234
DpnII GATC 3 cut(s) 58, 182, 232
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 23, 38
Eco24I GRGCYC 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 148, 190
EcoT14I CCWWGG 2 cut(s) 23, 38
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 2 cut(s) 23, 38
FaeI CATG 2 cut(s) 42, 181
FaiI YATR 5 cut(s) 40, 179, 214, 216, 220
FatI CATG 2 cut(s) 38, 177
Fnu4HI GCNGC 2 cut(s) 85, 227
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 85, 227
FspBI CTAG 1 cut(s) 243
GluI GCNGC 2 cut(s) 85, 227
HaeIII GGCC 3 cut(s) 49, 77, 154
HapII CCGG 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 42, 181
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 87, 177, 226
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 169, 178, 187
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 42, 181
Kzo9I GATC 3 cut(s) 58, 182, 232
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 30, 63, 135, 154, 162, 177, 204, 215, 242
Lsp1109I GCAGC 2 cut(s) 71, 238
MaeI CTAG 1 cut(s) 243
MaeII ACGT 1 cut(s) 105
MalI GATC 3 cut(s) 60, 184, 234
MboI GATC 3 cut(s) 58, 182, 232
MboII GAAGA 1 cut(s) 157
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 6 cut(s) 39, 46, 94, 118, 190, 241
MseI TTAA 2 cut(s) 138, 159
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 150, 192
MvaI CCWGG 2 cut(s) 150, 192
MwoI GCNNNNNNNGC 4 cut(s) 160, 169, 178, 187
NcoI CCATGG 1 cut(s) 38
NdeII GATC 3 cut(s) 58, 182, 232
NlaIII CATG 2 cut(s) 42, 181
NlaIV GGNNCC 3 cut(s) 21, 201, 234
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 170
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 2 cut(s) 86, 228
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 2 cut(s) 148, 190
PspGI CCWGG 2 cut(s) 148, 190
PspN4I GGNNCC 3 cut(s) 21, 201, 234
PspPI GGNCC 2 cut(s) 76, 152
PsuI RGATCY 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 138, 159
SatI GCNGC 2 cut(s) 85, 227
Sau3AI GATC 3 cut(s) 58, 182, 232
Sau96I GGNCC 2 cut(s) 76, 152
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 150, 192
SduI GDGCHC 1 cut(s) 38
SetI ASST 6 cut(s) 73, 108, 118, 165, 231, 252
SphI GCATGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 148, 190
StyI CCWWGG 2 cut(s) 23, 38
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 13
TaqII GACCGA 1 cut(s) 108
Tru1I TTAA 2 cut(s) 138, 159
Tru9I TTAA 2 cut(s) 138, 159
TscAI CASTG 1 cut(s) 179
TseI GCWGC 2 cut(s) 84, 226
TspRI CASTG 1 cut(s) 179
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 243
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.