FvH4_6g43320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016148
Physical Location & Seq
Reverse (-)
33552682 .. 33554253
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43320.t1

Sequence Viewer

Length: 264 bp
ATGAGCGAGACTCGACCGGTGCCGAGAAGAGAGAGCCCATGGGGCACGCCGGAGGGAGACCATCGTCAGCCCAAGGCCCATCGCTGCAATGACCGAGCTGAGGACGTCATCCAAGCTTGTTTTGAGGGAAACCCCTTTAAGACAGTCCCAGGGCCATTCAAGCTCTTCTATCAATGCATGCGATCTAAACCTGGGGAGGAACCAACAGAGCCATATACATATTTGCAGCTCGATCCTCCCACAAAGGAGGTGAAACTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF629

Protein Analysis

88

Amino Acids

10.07

Weight (kDa)

6.12

Isoelectric Point (pI)

70.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016148)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05205
fragaria_vesca FvH4_6g43320
malus_domestica MD09G1069700.v1.1 MD17G1095900.v1.1
prunus_persica Prupe.3G218000_v2.0.a1
pyrus_communis pycom09g02980
rosa_chinensis RchiOBHm_Chr2g0159651
rosa_multiflora Rmu_sc0011502.1_g000007
rosa_roxburghii Rroxscaffold_2G00090350
rosa_rugosa Rorug02G0477500
rosa_samantha Rh2AG544400 Rh2BG557200 Rh2CG527500 Rh2DG566300
rosa_wichuraiana Rw2G045020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 19
AclWI GGATC 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 2 cut(s) 148, 190
AluBI AGCT 4 cut(s) 98, 116, 163, 229
AluI AGCT 4 cut(s) 98, 116, 163, 229
Alw26I GTCTC 2 cut(s) 2, 51
AlwI GGATC 1 cut(s) 227
AoxI GGCC 2 cut(s) 75, 152
ApeKI GCWGC 2 cut(s) 84, 226
AsiGI ACCGGT 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 76, 152
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 38
BbvCI CCTCAGC 1 cut(s) 99
BbvI GCAGC 2 cut(s) 71, 238
BccI CCATC 2 cut(s) 69, 87
BciT130I CCWGG 2 cut(s) 150, 192
BcoDI GTCTC 2 cut(s) 2, 51
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 2 cut(s) 85, 227
BlsI GCNGC 2 cut(s) 86, 228
Bme1390I CCNGG 2 cut(s) 150, 192
BmgT120I GGNCC 2 cut(s) 76, 152
BmiI GGNNCC 2 cut(s) 21, 201
BmrFI CCNGG 2 cut(s) 150, 192
BoxI GACNNNNGTC 1 cut(s) 63
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 51
BsaJI CCNNGG 5 cut(s) 38, 72, 148, 149, 191
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 94
BseBI CCWGG 2 cut(s) 150, 192
BseDI CCNNGG 5 cut(s) 38, 72, 148, 149, 191
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 90
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 2 cut(s) 71, 238
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 77, 154
BshNI GGYRCC 1 cut(s) 19
BshTI ACCGGT 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 17
BsiSI CCGG 2 cut(s) 17, 50
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 2, 51
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 77, 154
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 38, 47
Bsp143I GATC 2 cut(s) 182, 232
Bsp19I CCATGG 1 cut(s) 38
BspANI GGCC 2 cut(s) 77, 154
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 21, 201
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 5 cut(s) 38, 72, 148, 149, 191
BssMI GATC 2 cut(s) 182, 232
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 2 cut(s) 38, 72
Bst2UI CCWGG 2 cut(s) 150, 192
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 22, 170
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 47, 179
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 2 cut(s) 185, 235
BstMAI GTCTC 2 cut(s) 2, 51
BstMBI GATC 2 cut(s) 182, 232
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 2 cut(s) 42, 160
BstNI CCWGG 2 cut(s) 150, 192
BstNSI RCATGY 1 cut(s) 181
BstPAI GACNNNNGTC 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 148, 190
BstSLI GKGCMC 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 71, 238
BsuRI GGCC 2 cut(s) 77, 154
BtgI CCRYGG 1 cut(s) 38
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 47, 179
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 76, 152
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 2 cut(s) 39, 178
CviJI RGCY 9 cut(s) 36, 70, 77, 98, 116, 154, 163, 211, 229
CviKI_1 RGCY 9 cut(s) 36, 70, 77, 98, 116, 154, 163, 211, 229
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 184, 234
DpnII GATC 2 cut(s) 182, 232
Eam1104I CTCTTC 2 cut(s) 22, 170
EarI CTCTTC 2 cut(s) 22, 170
Eco130I CCWWGG 2 cut(s) 38, 72
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 148, 190
EcoT14I CCWWGG 2 cut(s) 38, 72
EcoT22I ATGCAT 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 2 cut(s) 38, 72
FaeI CATG 2 cut(s) 42, 181
FaiI YATR 5 cut(s) 40, 179, 214, 216, 220
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 38, 177
Fnu4HI GCNGC 2 cut(s) 85, 227
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 85, 227
GluI GCNGC 2 cut(s) 85, 227
HaeIII GGCC 2 cut(s) 77, 154
HapII CCGG 2 cut(s) 17, 50
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 42, 181
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 17, 50
HphI GGTGA 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 87, 177, 226
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 160
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 42, 181
Kzo9I GATC 2 cut(s) 182, 232
LguI GCTCTTC 1 cut(s) 170
LpnPI CCDG 6 cut(s) 30, 63, 135, 162, 177, 204
Lsp1109I GCAGC 2 cut(s) 71, 238
MaeII ACGT 1 cut(s) 105
MalI GATC 2 cut(s) 184, 234
MboI GATC 2 cut(s) 182, 232
MboII GAAGA 2 cut(s) 39, 157
MhlI GDGCHC 2 cut(s) 38, 47
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 6 cut(s) 46, 94, 118, 190, 241, 246
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 1 cut(s) 138
MspI CCGG 2 cut(s) 17, 50
MspR9I CCNGG 2 cut(s) 150, 192
MvaI CCWGG 2 cut(s) 150, 192
MwoI GCNNNNNNNGC 2 cut(s) 42, 160
NcoI CCATGG 1 cut(s) 38
NdeII GATC 2 cut(s) 182, 232
NlaIII CATG 2 cut(s) 42, 181
NlaIV GGNNCC 2 cut(s) 21, 201
NmeAIII GCCGAG 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 179
NspI RCATGY 1 cut(s) 181
PaeI GCATGC 1 cut(s) 181
PasI CCCWGGG 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 170
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 2 cut(s) 86, 228
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PshAI GACNNNNGTC 1 cut(s) 63
Psp6I CCWGG 2 cut(s) 148, 190
PspGI CCWGG 2 cut(s) 148, 190
PspN4I GGNNCC 2 cut(s) 21, 201
PspPI GGNCC 2 cut(s) 76, 152
SapI GCTCTTC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 85, 227
Sau3AI GATC 2 cut(s) 182, 232
Sau96I GGNCC 2 cut(s) 76, 152
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 150, 192
SduI GDGCHC 2 cut(s) 38, 47
SetI ASST 7 cut(s) 100, 108, 118, 165, 193, 231, 252
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SphI GCATGC 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 148, 190
StyI CCWWGG 2 cut(s) 38, 72
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 13, 231
TaqII GACCGA 1 cut(s) 108
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 2 cut(s) 84, 226
XceI RCATGY 1 cut(s) 181
ZraI GACGTC 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.