AT1G05800

lipase class 3 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
1741204 .. 1742619
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G05800.1

Sequence Viewer

Length: 1416 bp
ATGGCGGCCAAAGTCTTCACTCAGAACCCTATCTATTCTCAATCTCTAGTTAGAGACAAAACTCCTCAACAGAAACACAATCTTGACCATTTCTCTATATCCCAGCACACCTCTAAAAGACTCGTTGTCTCTTCTTCTACAATGTCCCCTCCGATTTCATCTTCTCCACTCTCTCTTCCTTCTTCTTCTTCTTCTCAGGCCATTCCTCCTTCTCGAGCACCTGCAGTGACTCTACCGTTGTCTCGGGTTTGGAGAGAGATACAAGGGAGCAATAACTGGGAAAATCTCATTGAACCTCTAAGCCCTATTCTCCAACAAGAGATCACTCGCTACGGGAACTTACTCTCCGCTTCTTACAAAGGGTTTGATCTAAACCCTAACTCCAAACGTTACTTGAGTTGCAAGTATGGAAAAAAGAACTTGCTTAAAGAATCCGGAATCCATGACCCTGATGGCTACCAAGTCACCAAGTATATCTACGCCACACCAGACATCAACCTCAACCCTATCAAGAACGAGCCTAACCGTGCACGTTGGATCGGTTATGTAGCGGTTTCTTCTGATGAATCGGTGAAACGTTTGGGAAGGAGGGATATTTTGGTGACGTTTCGTGGCACTGTCACCAACCATGAGTGGTTAGCTAACCTAAAGAGCTCTTTGACTCCGGCTAGGCTTGATCCTCATAACCCTCGTCCTGATGTCAAGGTCGAATCCGGGTTCTTAGGTTTATACACATCCGGTGAGAGCGAGAGCAAATTCGGGCTAGAAAGCTGCCGTGAGCAGCTTCTCTCCGAGATCTCGAGGCTTATGAACAAGCACAAAGGCGAGGAAATAAGCATAACACTTGCGGGACATAGTATGGGGAGTTCTCTAGCTCAGCTTCTAGCTTACGACATAGCGGAACTCGGTATGAACCAGAGAAGGGACGAAAAACCTGTTCCGGTGACCGTGTTTTCGTTTGCTGGTCCTAGAGTTGGTAACTTGGGGTTCAAAAAACGGTGTGAGGAGCTAGGAGTTAAAGTCTTGAGGATCACGAATGTAAACGATCCGATCACCAAACTTCCAGGTTTCTTATTTAATGAGAATTTCAGATCTTTAGGTGGTGTTTACGAGCTTCCTTGGAGCTGTTCTTGCTACACTCACGTGGGAGTCGAACTCACCCTCGATTTCTTCGATGTTCAAAACATTTCTTGTGTCCATGACCTCGAGACTTACATCACTCTAGTAAACCGTCCGAGATGCTCGAAATTGGCGGTTAATGAAGACAATTTTGGCGGCGAGTTTTTGAACAGAACAAGTGAACTGATGTTCAGTAAGGGACGACGTCAAGCGTTGCATTTTACAAACGCAGCGACCAATGCGGCATATCTACTTTGTTCTATATCCAACCATATGTTGTATTATAATATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

52.8

Weight (kDa)

9.01

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 201 - 357 3.2e-35 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016585)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05800
fragaria_vesca FvH4_4g11680
malus_domestica MD04G1032700.v1.1
prunus_persica Prupe.1G181800_v2.0.a1
pyrus_communis pycom04g02700
rosa_chinensis RchiOBHm_Chr4g0408991
rosa_laevigata RLG00000008599
rosa_multiflora Rmu_sc0003685.1_g000001
rosa_roxburghii Rroxscaffold_5G00353440
rosa_rugosa Rorug04G0089000
rosa_samantha Rh4AG153200 Rh4BG151000 Rh4CG161600 Rh4DG146500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1404
AarI CACCTGC 1 cut(s) 229
AatII GACGTC 1 cut(s) 1327
Acc36I ACCTGC 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 434
AciI CCGC 8 cut(s) 5, 348, 551, 848, 899, 1253, 1275, 1361
AclI AACGTT 2 cut(s) 388, 577
AclWI GGATC 4 cut(s) 545, 671, 1037, 1040
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 755, 1084
AcvI CACGTG 1 cut(s) 1144
AcyI GRCGYC 1 cut(s) 1324
AfiI CCNNNNNNNGG 2 cut(s) 922, 974
AgsI TTSAA 4 cut(s) 293, 991, 1181, 1288
AhdI GACNNNNNGTC 1 cut(s) 125
AjnI CCWGG 1 cut(s) 1063
AjuI GAANNNNNNNTTGG 2 cut(s) 1254, 1286
AleI CACNNNNGTG 1 cut(s) 1142
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
Alw21I GWGCWC 3 cut(s) 220, 532, 656
Alw26I GTCTC 4 cut(s) 48, 133, 246, 1202
Alw44I GTGCAC 1 cut(s) 528
AlwI GGATC 4 cut(s) 545, 671, 1037, 1040
Ama87I CYCGRG 4 cut(s) 213, 243, 799, 1205
Aor13HI TCCGGA 1 cut(s) 434
AoxI GGCC 2 cut(s) 6, 198
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 3 cut(s) 771, 781, 1349
ApoI RAATTY 2 cut(s) 755, 1084
ArsI GACNNNNNNTTYG 2 cut(s) 937, 969
AspS9I GGNCC 1 cut(s) 965
AsuC2I CCSGG 1 cut(s) 715
AsuHPI GGTGA 8 cut(s) 457, 583, 613, 613, 752, 955, 1045, 1150
AvaI CYCGRG 4 cut(s) 213, 243, 799, 1205
AvaII GGWCC 1 cut(s) 965
BaeGI GKGCMC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 1144
BbsI GAAGAC 2 cut(s) 7, 1269
Bbv12I GWGCWC 3 cut(s) 220, 532, 656
BbvI GCAGC 3 cut(s) 758, 793, 1361
BccI CCATC 1 cut(s) 446
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 1 cut(s) 1065
BcnI CCSGG 1 cut(s) 715
BcoDI GTCTC 4 cut(s) 48, 133, 246, 1202
BfaI CTAG 8 cut(s) 47, 669, 764, 872, 884, 969, 1010, 1223
BfmI CTRYAG 1 cut(s) 222
BfuAI ACCTGC 1 cut(s) 229
BglII AGATCT 2 cut(s) 795, 1091
BisI GCNGC 6 cut(s) 6, 772, 782, 1276, 1350, 1362
BlpI GCTNAGC 1 cut(s) 876
BlsI GCNGC 6 cut(s) 7, 773, 783, 1277, 1351, 1363
Bme1390I CCNGG 2 cut(s) 715, 1065
Bme18I GGWCC 1 cut(s) 965
BmeRI GACNNNNNGTC 1 cut(s) 125
BmeT110I CYCGRG 4 cut(s) 213, 243, 799, 1205
BmgT120I GGNCC 1 cut(s) 965
BmrFI CCNGG 2 cut(s) 715, 1065
BmrI ACTGGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 1229
BmuI ACTGGG 1 cut(s) 286
BpiI GAAGAC 2 cut(s) 7, 1269
BplI GAGNNNNNCTC 2 cut(s) 1140, 1172
Bpu1102I GCTNAGC 1 cut(s) 876
BpuEI CTTGAG 2 cut(s) 415, 1045
BpuMI CCSGG 1 cut(s) 715
BsaAI YACGTR 1 cut(s) 1144
BsaHI GRCGYC 1 cut(s) 1324
BsaJI CCNNGG 1 cut(s) 1118
BsaWI WCCGGW 3 cut(s) 434, 737, 940
BsaXI ACNNNNNCTCC 6 cut(s) 329, 359, 365, 395, 1005, 1035
Bsc4I CCNNNNNNNGG 2 cut(s) 922, 974
Bse1I ACTGG 1 cut(s) 281
BseAI TCCGGA 1 cut(s) 434
BseBI CCWGG 1 cut(s) 1065
BseDI CCNNGG 1 cut(s) 1118
BseGI GGATG 1 cut(s) 734
BseLI CCNNNNNNNGG 2 cut(s) 922, 974
BseMII CTCAG 3 cut(s) 35, 209, 890
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 2 cut(s) 54, 1019
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 3 cut(s) 758, 793, 1361
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 8, 200
BsiHKAI GWGCWC 3 cut(s) 220, 532, 656
BsiHKCI CYCGRG 4 cut(s) 213, 243, 799, 1205
BsiSI CCGG 5 cut(s) 435, 665, 714, 738, 941
BslFI GGGAC 4 cut(s) 130, 864, 938, 1332
BslI CCNNNNNNNGG 2 cut(s) 922, 974
BsmAI GTCTC 4 cut(s) 48, 133, 246, 1202
BsmFI GGGAC 4 cut(s) 130, 864, 938, 1332
BsnI GGCC 2 cut(s) 8, 200
BsoBI CYCGRG 4 cut(s) 213, 243, 799, 1205
Bsp1286I GDGCHC 3 cut(s) 220, 532, 656
Bsp13I TCCGGA 1 cut(s) 434
Bsp143I GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
Bsp1720I GCTNAGC 1 cut(s) 876
BspACI CCGC 8 cut(s) 5, 348, 551, 848, 899, 1253, 1275, 1361
BspANI GGCC 2 cut(s) 8, 200
BspCNI CTCAG 3 cut(s) 34, 208, 889
BspEI TCCGGA 1 cut(s) 434
BspMAI CTGCAG 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 4 cut(s) 545, 671, 1037, 1040
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 1118
BssMI GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
BssNI GRCGYC 1 cut(s) 1324
BssT1I CCWWGG 1 cut(s) 1118
Bst2UI CCWGG 1 cut(s) 1065
Bst4CI ACNGT 6 cut(s) 237, 527, 619, 949, 999, 1232
Bst6I CTCTTC 2 cut(s) 136, 180
BstACI GRCGYC 1 cut(s) 1324
BstBAI YACGTR 1 cut(s) 1144
BstDEI CTNAG 5 cut(s) 21, 195, 299, 721, 876
BstEII GGTNACC 1 cut(s) 943
BstF5I GGATG 1 cut(s) 734
BstKTI GATC 9 cut(s) 324, 370, 540, 679, 798, 1032, 1048, 1053, 1094
BstMAI GTCTC 4 cut(s) 48, 133, 246, 1202
BstMBI GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
BstMWI GCNNNNNNNGC 2 cut(s) 1131, 1358
BstNI CCWGG 1 cut(s) 1065
BstPI GGTNACC 1 cut(s) 943
BstSCI CCNGG 2 cut(s) 713, 1063
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 3 cut(s) 758, 793, 1361
BstV2I GAAGAC 2 cut(s) 7, 1269
BstX2I RGATCY 2 cut(s) 795, 1091
BstYI RGATCY 2 cut(s) 795, 1091
BsuRI GGCC 2 cut(s) 8, 200
BtsCI GGATG 1 cut(s) 734
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 231, 615
BveI ACCTGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 965
CviAII CATG 3 cut(s) 443, 629, 1199
DdeI CTNAG 5 cut(s) 21, 195, 299, 721, 876
DpnI GATC 9 cut(s) 323, 369, 539, 678, 797, 1031, 1047, 1052, 1093
DpnII GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
DriI GACNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 136, 180
Eam1105I GACNNNNNGTC 1 cut(s) 125
EarI CTCTTC 2 cut(s) 136, 180
Ecl136II GAGCTC 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 1118
Eco24I GRGCYC 1 cut(s) 656
Eco47I GGWCC 1 cut(s) 965
Eco53kI GAGCTC 1 cut(s) 654
Eco72I CACGTG 1 cut(s) 1144
Eco88I CYCGRG 4 cut(s) 213, 243, 799, 1205
Eco91I GGTNACC 1 cut(s) 943
EcoICRI GAGCTC 1 cut(s) 654
EcoO65I GGTNACC 1 cut(s) 943
EcoRII CCWGG 1 cut(s) 1063
EcoT14I CCWWGG 1 cut(s) 1118
EcoT38I GRGCYC 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 1118
FaeI CATG 3 cut(s) 446, 632, 1202
FaqI GGGAC 4 cut(s) 130, 864, 938, 1332
FatI CATG 3 cut(s) 442, 628, 1198
FauI CCCGC 1 cut(s) 841
FauNDI CATATG 1 cut(s) 1392
Fnu4HI GCNGC 6 cut(s) 6, 772, 782, 1276, 1350, 1362
FokI GGATG 1 cut(s) 721
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 6 cut(s) 6, 772, 782, 1276, 1350, 1362
FspBI CTAG 8 cut(s) 47, 669, 764, 872, 884, 969, 1010, 1223
GluI GCNGC 6 cut(s) 6, 772, 782, 1276, 1350, 1362
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 2 cut(s) 8, 200
HapII CCGG 5 cut(s) 435, 665, 714, 738, 941
Hin1I GRCGYC 1 cut(s) 1324
Hin1II CATG 3 cut(s) 446, 632, 1202
HinfI GANTC 8 cut(s) 120, 229, 431, 438, 566, 661, 710, 1149
HpaII CCGG 5 cut(s) 435, 665, 714, 738, 941
HphI GGTGA 8 cut(s) 457, 583, 613, 613, 752, 955, 1045, 1150
Hpy166II GTNNAC 5 cut(s) 530, 1042, 1108, 1228, 1301
Hpy188I TCNGA 7 cut(s) 24, 153, 562, 793, 1050, 1091, 1236
Hpy188III TCNNGA 9 cut(s) 83, 213, 435, 511, 695, 799, 1024, 1033, 1207
Hpy8I GTNNAC 5 cut(s) 530, 1042, 1108, 1228, 1301
Hpy99I CGWCG 1 cut(s) 1326
HpyAV CCTTC 4 cut(s) 189, 219, 579, 915
HpyCH4III ACNGT 6 cut(s) 237, 527, 619, 949, 999, 1232
HpyCH4IV ACGT 6 cut(s) 388, 532, 577, 605, 1143, 1324
HpyCH4V TGCA 4 cut(s) 224, 402, 530, 1336
HpyF10VI GCNNNNNNNGC 2 cut(s) 1131, 1358
HpyF3I CTNAG 5 cut(s) 21, 195, 299, 721, 876
HpySE526I ACGT 6 cut(s) 388, 532, 577, 605, 1143, 1324
Hsp92I GRCGYC 1 cut(s) 1324
Hsp92II CATG 3 cut(s) 446, 632, 1202
Kpn2I TCCGGA 1 cut(s) 434
Kzo9I GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
LmnI GCTCC 3 cut(s) 267, 1006, 1122
Lsp1109I GCAGC 3 cut(s) 758, 793, 1361
LweI GCATC 1 cut(s) 1229
MaeI CTAG 8 cut(s) 47, 669, 764, 872, 884, 969, 1010, 1223
MaeII ACGT 6 cut(s) 388, 532, 577, 605, 1143, 1324
MaeIII GTNAC 7 cut(s) 226, 389, 463, 601, 619, 943, 977
MalI GATC 9 cut(s) 323, 369, 539, 678, 797, 1031, 1047, 1052, 1093
MboI GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
MflI RGATCY 2 cut(s) 795, 1091
MhlI GDGCHC 3 cut(s) 220, 532, 656
MluCI AATT 4 cut(s) 755, 1084, 1247, 1267
MlyI GAGTC 4 cut(s) 114, 223, 655, 1158
MmeI TCCRAC 3 cut(s) 337, 515, 1410
MroI TCCGGA 1 cut(s) 434
MseI TTAA 4 cut(s) 426, 1017, 1077, 1257
MslI CAYNNNNRTG 1 cut(s) 1142
MspI CCGG 5 cut(s) 435, 665, 714, 738, 941
MspR9I CCNGG 2 cut(s) 715, 1065
MvaI CCWGG 1 cut(s) 1065
MwoI GCNNNNNNNGC 2 cut(s) 1131, 1358
NciI CCSGG 1 cut(s) 715
NdeI CATATG 1 cut(s) 1392
NdeII GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
NlaIII CATG 3 cut(s) 446, 632, 1202
NmuCI GTSAC 5 cut(s) 226, 463, 601, 619, 943
OliI CACNNNNGTG 1 cut(s) 1142
PaeR7I CTCGAG 3 cut(s) 213, 799, 1205
PaqCI CACCTGC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 2 cut(s) 1149, 1170
PfeI GAWTC 4 cut(s) 431, 438, 566, 710
PflFI GACNNNGTC 1 cut(s) 1323
PkrI GCNGC 6 cut(s) 7, 773, 783, 1277, 1351, 1363
PleI GAGTC 4 cut(s) 114, 223, 655, 1157
PmaCI CACGTG 1 cut(s) 1144
PmlI CACGTG 1 cut(s) 1144
PpsI GAGTC 4 cut(s) 114, 223, 655, 1157
Ppu21I YACGTR 1 cut(s) 1144
PsiI TTATAA 1 cut(s) 1404
Psp124BI GAGCTC 1 cut(s) 656
Psp1406I AACGTT 2 cut(s) 388, 577
Psp6I CCWGG 1 cut(s) 1063
PspCI CACGTG 1 cut(s) 1144
PspEI GGTNACC 1 cut(s) 943
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 1063
PspPI GGNCC 1 cut(s) 965
PsrI GAACNNNNNNTAC 2 cut(s) 850, 882
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 2 cut(s) 795, 1091
PsyI GACNNNGTC 1 cut(s) 1323
RseI CAYNNNNRTG 1 cut(s) 1142
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 4 cut(s) 426, 1017, 1077, 1257
SatI GCNGC 6 cut(s) 6, 772, 782, 1276, 1350, 1362
Sau3AI GATC 9 cut(s) 321, 367, 537, 676, 795, 1029, 1045, 1050, 1091
Sau96I GGNCC 1 cut(s) 965
SchI GAGTC 4 cut(s) 114, 223, 655, 1158
ScrFI CCNGG 2 cut(s) 715, 1065
SduI GDGCHC 3 cut(s) 220, 532, 656
SfaNI GCATC 1 cut(s) 1229
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 3 cut(s) 213, 799, 1205
SinI GGWCC 1 cut(s) 965
SlaI CTCGAG 3 cut(s) 213, 799, 1205
SmiMI CAYNNNNRTG 1 cut(s) 1142
SmlI CTYRAG 5 cut(s) 213, 394, 799, 1024, 1205
SmoI CTYRAG 5 cut(s) 213, 394, 799, 1024, 1205
Sse9I AATT 4 cut(s) 755, 1084, 1247, 1267
SsiI CCGC 8 cut(s) 5, 348, 551, 848, 899, 1253, 1275, 1361
SspMI CTAG 8 cut(s) 47, 669, 764, 872, 884, 969, 1010, 1223
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 713, 1063
StyI CCWWGG 1 cut(s) 1118
TaaI ACNGT 6 cut(s) 237, 527, 619, 949, 999, 1232
TaiI ACGT 6 cut(s) 391, 535, 580, 608, 1146, 1327
TaqI TCGA 8 cut(s) 214, 708, 800, 1152, 1164, 1173, 1206, 1244
TasI AATT 4 cut(s) 755, 1084, 1247, 1267
TauI GCSGC 3 cut(s) 8, 1278, 1364
TfiI GAWTC 4 cut(s) 431, 438, 566, 710
Tru1I TTAA 4 cut(s) 426, 1017, 1077, 1257
Tru9I TTAA 4 cut(s) 426, 1017, 1077, 1257
TscAI CASTG 2 cut(s) 231, 622
TseFI GTSAC 5 cut(s) 226, 463, 601, 619, 943
TseI GCWGC 3 cut(s) 771, 781, 1349
Tsp45I GTSAC 5 cut(s) 226, 463, 601, 619, 943
TspDTI ATGAA 5 cut(s) 147, 579, 824, 926, 1275
TspRI CASTG 2 cut(s) 231, 622
Tth111I GACNNNGTC 1 cut(s) 1323
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 2 cut(s) 755, 1084
XcmI CCANNNNNNNNNTGG 1 cut(s) 449
XhoI CTCGAG 3 cut(s) 213, 799, 1205
XspI CTAG 8 cut(s) 47, 669, 764, 872, 884, 969, 1010, 1223
ZraI GACGTC 1 cut(s) 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.