Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0016585

Physical Location & Seq

Genomic Coordinates Reverse (-)

13775397 .. 13776548

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0089000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGTTTTCTTCTTCTTCTTCCTACTACACCCGCTGGCACGCCATACTCTACTCCACCATAGCCATCATCCTCGCCGCCATCGCAATCTCCATGACTCTCAGCTCTGACCCCACCGCGGCACTCCTCCAAATCTCGCCGGAGCTCTTCCTCTCCTTGCCGAACTCCACCATCTTCGCAATTGCCGACTCTCACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTCAAATACCACACCTCTCCAGTTAGGGTTCCAATCGAAGACCTGATGAAGAAGCCTCAAGGTTCTTGCTTGCCGACTTTGTACCGGAAAAAGAGCCTCGCGATCACGAGAATTGATCGGAAGAATCGGACAGTCCAGATCAATCGCGTTTGGGTCTCGCACCCGAATCTGTTTGTGGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCCTTCGCAGCTGTGGATCCCGATTATGACGTCATTCATGCGCCTGTGTGCGACTTCAATTCGAATGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTCGGTTGCTGAGCTCAAAGGGGTTTGTGTCGTTTGCAATTGGGCTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTTTGTGACGATTTTTGTGCCACCAAGATTCGAGCTTGGAGCTCATCATCATCCTCAATCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAAAGGCTTACACACAGGGAGCTTCCAGCTTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCAGAATTGGTCATCAATGGAGTGAGGATCGTGGCGCCCAACATCTATTCTTTGAACAACTTGGTTGTCCATGGGATTTCCCGAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004806 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005811 GO:0006082 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0006950 GO:0006952 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008970 GO:0009056 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009653 GO:0009657 GO:0009668 GO:0009694 GO:0009695 GO:0009791 GO:0009888 GO:0009908 GO:0009987 GO:0010022 GO:0010027 GO:0010073 GO:0010150 GO:0010582 GO:0010817 GO:0016042 GO:0016043 GO:0016053 GO:0016298 GO:0016787 GO:0016788 GO:0019433 GO:0019752 GO:0022414 GO:0030308 GO:0032501 GO:0032502 GO:0032787 GO:0040008 GO:0042445 GO:0042446 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045926 GO:0046394 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047714 GO:0048366 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048507 GO:0048519 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051704 GO:0051707 GO:0052689 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0072330 GO:0090567 GO:0090693 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901575 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

329

Amino Acids

36.47

Weight (kDa)

9.36

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016585)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05800
fragaria_vesca	FvH4_4g11680
malus_domestica	MD04G1032700.v1.1
prunus_persica	Prupe.1G181800_v2.0.a1
pyrus_communis	pycom04g02700
rosa_chinensis	RchiOBHm_Chr4g0408991
rosa_laevigata	RLG00000008599
rosa_multiflora	Rmu_sc0003685.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353440
rosa_rugosa	Rorug04G0089000
rosa_samantha	Rh4AG153200 Rh4BG151000 Rh4CG161600 Rh4DG146500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	904
AccII	CGCG	3 cut(s)	119, 338, 384
AciI	CCGC	4 cut(s)	34, 78, 117, 119
AclWI	GGATC	5 cut(s)	414, 427, 458, 471, 905
AcyI	GRCGYC	2 cut(s)	477, 905
AdeI	CACNNNGTG	1 cut(s)	757
AfaI	GTAC	1 cut(s)	320
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	505, 538, 647, 925
Alw21I	GWGCWC	3 cut(s)	147, 590, 709
Alw26I	GTCTC	2 cut(s)	225, 397
AlwI	GGATC	5 cut(s)	414, 427, 458, 471, 905
AlwNI	CAGNNNCTG	1 cut(s)	841
Ama87I	CYCGRG	1 cut(s)	951
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	2 cut(s)	455, 619
AspLEI	GCGC	2 cut(s)	490, 907
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	212, 842, 976
AsuII	TTCGAA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	951
BamHI	GGATCC	2 cut(s)	419, 463
BanI	GGYRCC	1 cut(s)	904
BanII	GRGCYC	3 cut(s)	147, 590, 709
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	3 cut(s)	147, 590, 709
BbvI	GCAGC	2 cut(s)	467, 606
BccI	CCATC	4 cut(s)	74, 89, 179, 629
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	4 cut(s)	664, 698, 790, 824
BclI	TGATCA	1 cut(s)	832
BcoDI	GTCTC	2 cut(s)	225, 397
BfoI	RGCGCY	1 cut(s)	908
BglI	GCCNNNNNGGC	1 cut(s)	766
BisI	GCNGC	4 cut(s)	78, 120, 456, 620
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	4 cut(s)	79, 121, 457, 621
BmeT110I	CYCGRG	1 cut(s)	951
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	5 cut(s)	267, 421, 448, 465, 906
BmrI	ACTGGG	1 cut(s)	861
BmuI	ACTGGG	1 cut(s)	861
BpiI	GAAGAC	1 cut(s)	282
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	812
Bpu1102I	GCTNAGC	1 cut(s)	584
Bpu14I	TTCGAA	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	279, 752
BsaHI	GRCGYC	2 cut(s)	477, 905
BsaI	GGTCTC	2 cut(s)	225, 397
BsaJI	CCNNGG	2 cut(s)	117, 940
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	257, 856
Bse3DI	GCAATG	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	117, 940
BseGI	GGATG	2 cut(s)	69, 715
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	4 cut(s)	115, 241, 575, 826
BseNI	ACTGG	2 cut(s)	257, 856
BseRI	GAGGAG	4 cut(s)	116, 207, 215, 227
BseXI	GCAGC	2 cut(s)	467, 606
Bsh1236I	CGCG	3 cut(s)	119, 338, 384
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	904
BsiHKAI	GWGCWC	3 cut(s)	147, 590, 709
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	2 cut(s)	140, 322
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	225, 397
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	447
Bso31I	GGTCTC	2 cut(s)	225, 397
BsoBI	CYCGRG	1 cut(s)	951
Bsp119I	TTCGAA	1 cut(s)	509
Bsp1286I	GDGCHC	3 cut(s)	147, 590, 709
Bsp143I	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
Bsp1720I	GCTNAGC	1 cut(s)	584
Bsp19I	CCATGG	1 cut(s)	940
Bsp68I	TCGCGA	1 cut(s)	338
BspACI	CCGC	4 cut(s)	34, 78, 117, 119
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	4 cut(s)	114, 240, 576, 825
BspFNI	CGCG	3 cut(s)	119, 338, 384
BspLI	GGNNCC	5 cut(s)	267, 421, 448, 465, 906
BspPI	GGATC	5 cut(s)	414, 427, 458, 471, 905
BspQI	GCTCTTC	2 cut(s)	152, 542
BspT104I	TTCGAA	1 cut(s)	509
BspT107I	GGYRCC	1 cut(s)	904
BspTNI	GGTCTC	2 cut(s)	225, 397
BsrDI	GCAATG	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	257, 856
BssECI	CCNNGG	2 cut(s)	117, 940
BssMI	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
BssNI	GRCGYC	2 cut(s)	477, 905
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	940
Bst2BI	CACGAG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	2 cut(s)	152, 542
BstACI	GRCGYC	2 cut(s)	477, 905
BstBI	TTCGAA	1 cut(s)	509
BstC8I	GCNNGC	4 cut(s)	38, 42, 308, 798
BstDEI	CTNAG	4 cut(s)	101, 227, 584, 812
BstDSI	CCRYGG	2 cut(s)	117, 940
BstF5I	GGATG	2 cut(s)	69, 715
BstFNI	CGCG	3 cut(s)	119, 338, 384
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	2 cut(s)	490, 907
BstKTI	GATC	8 cut(s)	342, 355, 378, 422, 466, 835, 900, 973
BstMAI	GTCTC	2 cut(s)	225, 397
BstMBI	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 444, 766, 797
BstUI	CGCG	3 cut(s)	119, 338, 384
BstV1I	GCAGC	2 cut(s)	467, 606
BstV2I	GAAGAC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	419, 463
BstYI	RGATCY	2 cut(s)	419, 463
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	2 cut(s)	117, 940
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	69, 715
BtsIMutI	CAGTG	1 cut(s)	849
BtuMI	TCGCGA	1 cut(s)	338
Cac8I	GCNNGC	4 cut(s)	38, 42, 308, 798
CaiI	CAGNNNCTG	1 cut(s)	841
CfoI	GCGC	2 cut(s)	490, 907
Cfr13I	GGNCC	1 cut(s)	446
Cfr42I	CCGCGG	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	5 cut(s)	94, 485, 827, 868, 941
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	4 cut(s)	101, 227, 584, 812
DinI	GGCGCC	1 cut(s)	906
DpnI	GATC	8 cut(s)	341, 354, 377, 421, 465, 834, 899, 972
DpnII	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
DraIII	CACNNNGTG	1 cut(s)	757
Eam1104I	CTCTTC	2 cut(s)	152, 542
EarI	CTCTTC	2 cut(s)	152, 542
Ecl136II	GAGCTC	3 cut(s)	145, 588, 707
Eco130I	CCWWGG	1 cut(s)	940
Eco24I	GRGCYC	3 cut(s)	147, 590, 709
Eco31I	GGTCTC	2 cut(s)	225, 397
Eco53kI	GAGCTC	3 cut(s)	145, 588, 707
Eco88I	CYCGRG	1 cut(s)	951
EcoICRI	GAGCTC	3 cut(s)	145, 588, 707
EcoT14I	CCWWGG	1 cut(s)	940
EcoT38I	GRGCYC	3 cut(s)	147, 590, 709
EgeI	GGCGCC	1 cut(s)	906
EheI	GGCGCC	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	940
FaeI	CATG	5 cut(s)	97, 488, 830, 871, 944
FatI	CATG	5 cut(s)	93, 484, 826, 867, 940
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	832
Fnu4HI	GCNGC	4 cut(s)	78, 120, 456, 620
FokI	GGATG	2 cut(s)	56, 702
FriOI	GRGCYC	3 cut(s)	147, 590, 709
Fsp4HI	GCNGC	4 cut(s)	78, 120, 456, 620
GlaI	GCGC	2 cut(s)	489, 906
GluI	GCNGC	4 cut(s)	78, 120, 456, 620
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	908
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	2 cut(s)	140, 322
HhaI	GCGC	2 cut(s)	490, 907
Hin1I	GRCGYC	2 cut(s)	477, 905
Hin1II	CATG	5 cut(s)	97, 488, 830, 871, 944
Hin6I	GCGC	2 cut(s)	488, 905
HinP1I	GCGC	2 cut(s)	488, 905
HinfI	GANTC	8 cut(s)	97, 188, 361, 403, 430, 640, 693, 805
HpaII	CCGG	2 cut(s)	140, 322
HphI	GGTGA	3 cut(s)	212, 842, 976
Hpy188I	TCNGA	5 cut(s)	109, 230, 357, 366, 570
Hpy188III	TCNNGA	9 cut(s)	337, 343, 373, 467, 632, 644, 814, 842, 951
HpyAV	CCTTC	2 cut(s)	410, 460
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	2 cut(s)	611, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 444, 766, 797
HpyF3I	CTNAG	4 cut(s)	101, 227, 584, 812
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	2 cut(s)	477, 905
Hsp92II	CATG	5 cut(s)	97, 488, 830, 871, 944
HspAI	GCGC	2 cut(s)	488, 905
KasI	GGCGCC	1 cut(s)	904
Ksp22I	TGATCA	1 cut(s)	832
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
LguI	GCTCTTC	2 cut(s)	152, 542
LmnI	GCTCC	3 cut(s)	142, 704, 781
Lsp1109I	GCAGC	2 cut(s)	467, 606
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	670, 847
MalI	GATC	8 cut(s)	341, 354, 377, 421, 465, 834, 899, 972
MboI	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
MfeI	CAATTG	2 cut(s)	180, 612
MflI	RGATCY	2 cut(s)	419, 463
MhlI	GDGCHC	3 cut(s)	147, 590, 709
MluCI	AATT	5 cut(s)	180, 348, 505, 612, 875
Mly113I	GGCGCC	1 cut(s)	905
MlyI	GAGTC	3 cut(s)	91, 182, 799
MmeI	TCCRAC	2 cut(s)	225, 548
MspA1I	CMGCKG	3 cut(s)	36, 119, 458
MspI	CCGG	2 cut(s)	140, 322
MunI	CAATTG	2 cut(s)	180, 612
Mva1269I	GAATGC	1 cut(s)	622
MvnI	CGCG	3 cut(s)	119, 338, 384
MwoI	GCNNNNNNNGC	4 cut(s)	83, 444, 766, 797
NarI	GGCGCC	1 cut(s)	905
NcoI	CCATGG	1 cut(s)	940
NdeII	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
NlaIII	CATG	5 cut(s)	97, 488, 830, 871, 944
NlaIV	GGNNCC	5 cut(s)	267, 421, 448, 465, 906
NmuCI	GTSAC	2 cut(s)	670, 847
NruI	TCGCGA	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	509
PciSI	GCTCTTC	2 cut(s)	152, 542
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	5 cut(s)	361, 403, 430, 640, 693
PkrI	GCNGC	4 cut(s)	79, 121, 457, 621
PleI	GAGTC	3 cut(s)	91, 182, 799
PluTI	GGCGCC	1 cut(s)	908
PpsI	GAGTC	3 cut(s)	91, 182, 799
Psp124BI	GAGCTC	3 cut(s)	147, 590, 709
PspN4I	GGNNCC	5 cut(s)	267, 421, 448, 465, 906
PspPI	GGNCC	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	419, 463
PvuII	CAGCTG	1 cut(s)	458
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SacI	GAGCTC	3 cut(s)	147, 590, 709
SacII	CCGCGG	1 cut(s)	120
SapI	GCTCTTC	2 cut(s)	152, 542
SatI	GCNGC	4 cut(s)	78, 120, 456, 620
Sau3AI	GATC	8 cut(s)	339, 352, 375, 419, 463, 832, 897, 970
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	3 cut(s)	91, 182, 799
SduI	GDGCHC	3 cut(s)	147, 590, 709
SfoI	GGCGCC	1 cut(s)	906
Sfr303I	CCGCGG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	509
SgrBI	CCGCGG	1 cut(s)	120
SmlI	CTYRAG	2 cut(s)	294, 731
SmoI	CTYRAG	2 cut(s)	294, 731
Sse9I	AATT	5 cut(s)	180, 348, 505, 612, 875
SsiI	CCGC	4 cut(s)	34, 78, 117, 119
SspDI	GGCGCC	1 cut(s)	904
SstI	GAGCTC	3 cut(s)	147, 590, 709
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	5 cut(s)	273, 428, 509, 696, 960
TasI	AATT	5 cut(s)	180, 348, 505, 612, 875
TauI	GCSGC	2 cut(s)	80, 122
TfiI	GAWTC	5 cut(s)	361, 403, 430, 640, 693
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	2 cut(s)	670, 847
TseI	GCWGC	2 cut(s)	455, 619
Tsp45I	GTSAC	2 cut(s)	670, 847
TspDTI	ATGAA	4 cut(s)	299, 473, 815, 856
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	1 cut(s)	856
ZraI	GACGTC	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.