Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011676

Physical Location & Seq

Genomic Coordinates Reverse (-)

2257384 .. 2260187

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G07350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGGGAAACGTGAAATTCATTTTACTCCGGTGGGTCGTCAGGTGCAGAGAGTTCTGGAATATCCATTGCGCTTGGAGAATCGTTCGCCGATGTCTTACTCAAGAAGGTCAAGATACTCTCCTTCACTATCTCCTTATGACAAGCGTCGTGGAAGGTCTGTGTCAAGGTCATTGTCTAGAAGCCCGACGAGGAGTGTCTCAAGCGATGCTGAGAATCCTGGTAACAGTTTATATGTAACTGGATTGTCTCACCGGGTTACTGAAAGAGATCTGGAGGATCATTTCGCTAAAGAAGGAAAGGTAACTGATGTTCACCTTGTCCTGGACCCATGGACTAGAGAATCTCGCGGATTTGGTTTTATCTCTATGAAAAGTGTTGGTGATGCTAACCGTTGCATCAGATCTCTAGATCACTCTGTTCTGCAGGGCCGCGTCATCACTGTTGAGAAGGCAAGACGTCGTAGAGGACGTACTCCAACTCCAGGAAAGTACTTGGGGCTGAGAACTGCTCGAGGACGACATAAGTCTCCTAGCTACTCTCCCCGCAGGTCTGTTAGCTGCTCTCGTAGTCGTAGTCGAAGCTACTCATCTGATCGGGGCAGATCTTATTCTCCAAGCTATGGGAGAAGAGGAAGGTCATCCTCGTACTCACCCTTCTATCGACGACGCAGATTCTACTCTCCTTCGAGATCTCCTTCACCTGATGATCGTTACAACAGGAGACGCGACAGATCATACTCACCTTACTACAGGCGGAGGGACCGGTCCAGATCCTACTCACGTAACTGTAGAGCACGGGACAGATCACCTTACTACATGCGGAGGTACAGGTCCAGATCCAGGTCATACTCGCCTCGCTACAGAGCACGTGACCGATCATGCTCACCCTACTACAGGGGAAGAGACCGGTCTTATTCACCCCACTACCAAGGGAGAGACAGATCCTACTCACCTGAAAGTCGTTACTACAGAAGGCACAGGTCGGTATCGGGAAGCGTAAGCCCTGGAGGGAGAAGCATGTCACGTAGCATATCCCCAAGGAAGGGAAGGAAAGAGAGCAGAAGCAAGTCTCGGAGGCACGACAGGCAATCTTCAATGTGTCATTCGAGGAGCGCAAGATCAAGCACCTCCAGATCCGTCAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006325 GO:0006396 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043484 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

382

Amino Acids

44.98

Weight (kDa)

11.56

Isoelectric Point (pI)

121.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	47 - 117	6.6e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07350 AT1G07350 AT1G07350 AT1G07350 AT1G07350 AT1G07350
fragaria_vesca	FvH4_3g37890 FvH4_3g37890 FvH4_3g37890
malus_domestica	MD11G1082400.v1.1
prunus_persica	Prupe.6G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0068121
rosa_laevigata	RLG00000035958
rosa_multiflora	Rmu_sc0000435.1_g000014 Rmu_sc0009382.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013220
rosa_rugosa	Rorug05G0388600
rosa_samantha	Rh5CG486900
rosa_wichuraiana	Rw5G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccII	CGCG	3 cut(s)	348, 432, 726
AciI	CCGC	5 cut(s)	348, 430, 544, 754, 820
AclWI	GGATC	5 cut(s)	285, 765, 831, 936, 1128
AcsI	RAATTY	1 cut(s)	15
AcvI	CACGTG	1 cut(s)	869
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	4 cut(s)	472, 491, 647, 827
AfiI	CCNNNNNNNGG	7 cut(s)	322, 482, 620, 840, 894, 1042, 1043
AgeI	ACCGGT	2 cut(s)	762, 906
AgsI	TTSAA	1 cut(s)	1095
AjnI	CCWGG	5 cut(s)	217, 321, 481, 839, 1003
AluBI	AGCT	4 cut(s)	534, 558, 582, 618
AluI	AGCT	4 cut(s)	534, 558, 582, 618
Alw21I	GWGCWC	2 cut(s)	796, 868
Alw26I	GTCTC	7 cut(s)	202, 252, 531, 715, 897, 930, 1074
AlwI	GGATC	5 cut(s)	285, 765, 831, 936, 1128
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	1 cut(s)	15
AsiGI	ACCGGT	2 cut(s)	762, 906
AspLEI	GCGC	2 cut(s)	72, 1115
AspS9I	GGNCC	5 cut(s)	325, 427, 760, 765, 831
AsuC2I	CCSGG	1 cut(s)	254
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	4 cut(s)	325, 760, 765, 831
BarI	GAAGNNNNNNTAC	2 cut(s)	638, 670
BbrPI	CACGTG	1 cut(s)	869
Bbv12I	GWGCWC	2 cut(s)	796, 868
BbvI	GCAGC	1 cut(s)	545
BciT130I	CCWGG	5 cut(s)	219, 323, 483, 841, 1005
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	7 cut(s)	202, 252, 531, 715, 897, 930, 1074
BfaI	CTAG	4 cut(s)	177, 336, 407, 531
BfmI	CTRYAG	6 cut(s)	422, 748, 787, 859, 892, 967
BfuAI	ACCTGC	1 cut(s)	537
BglII	AGATCT	4 cut(s)	268, 401, 602, 689
BisI	GCNGC	2 cut(s)	430, 559
BlsI	GCNGC	2 cut(s)	431, 560
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	6 cut(s)	219, 254, 323, 483, 841, 1005
Bme18I	GGWCC	4 cut(s)	325, 760, 765, 831
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	5 cut(s)	325, 427, 760, 765, 831
BmiI	GGNNCC	2 cut(s)	327, 761
BmrFI	CCNGG	6 cut(s)	219, 254, 323, 483, 841, 1005
BmsI	GCATC	3 cut(s)	196, 373, 405
BoxI	GACNNNNGTC	2 cut(s)	144, 523
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	4 cut(s)	293, 465, 1026, 1114
BpuEI	CTTGAG	2 cut(s)	85, 184
BpuMI	CCSGG	1 cut(s)	254
BsaAI	YACGTR	3 cut(s)	782, 869, 1025
BsaHI	GRCGYC	1 cut(s)	457
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	4 cut(s)	329, 928, 1003, 1037
BsaWI	WCCGGW	3 cut(s)	28, 762, 906
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	7 cut(s)	322, 482, 620, 840, 894, 1042, 1043
Bse118I	RCCGGY	2 cut(s)	762, 906
Bse1I	ACTGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	5 cut(s)	219, 323, 483, 841, 1005
BseDI	CCNNGG	4 cut(s)	329, 928, 1003, 1037
BseGI	GGATG	1 cut(s)	638
BseLI	CCNNNNNNNGG	7 cut(s)	322, 482, 620, 840, 894, 1042, 1043
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	201, 491
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	205, 1123
BseXI	GCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	3 cut(s)	348, 432, 726
BshFI	GGCC	1 cut(s)	429
BshTI	ACCGGT	2 cut(s)	762, 906
BsiHKAI	GWGCWC	2 cut(s)	796, 868
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	4 cut(s)	29, 253, 763, 907
BslFI	GGGAC	2 cut(s)	773, 812
BslI	CCNNNNNNNGG	7 cut(s)	322, 482, 620, 840, 894, 1042, 1043
BsmAI	GTCTC	7 cut(s)	202, 252, 531, 715, 897, 930, 1074
BsmBI	CGTCTC	1 cut(s)	715
BsmFI	GGGAC	2 cut(s)	773, 812
BsnI	GGCC	1 cut(s)	429
Bso31I	GGTCTC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	796, 868
Bsp19I	CCATGG	1 cut(s)	329
BspACI	CCGC	5 cut(s)	348, 430, 544, 754, 820
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	2 cut(s)	202, 492
BspFNI	CGCG	3 cut(s)	348, 432, 726
BspLI	GGNNCC	2 cut(s)	327, 761
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	537
BspPI	GGATC	5 cut(s)	285, 765, 831, 936, 1128
BspTNI	GGTCTC	1 cut(s)	897
BsrDI	GCAATG	1 cut(s)	65
BsrFI	RCCGGY	2 cut(s)	762, 906
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	2 cut(s)	762, 906
BssECI	CCNNGG	4 cut(s)	329, 928, 1003, 1037
BssNI	GRCGYC	1 cut(s)	457
BssT1I	CCWWGG	3 cut(s)	329, 928, 1037
Bst2UI	CCWGG	5 cut(s)	219, 323, 483, 841, 1005
Bst4CI	ACNGT	4 cut(s)	227, 392, 442, 788
Bst6I	CTCTTC	2 cut(s)	622, 895
BstACI	GRCGYC	1 cut(s)	457
BstBAI	YACGTR	3 cut(s)	782, 869, 1025
BstDEI	CTNAG	2 cut(s)	210, 500
BstDSI	CCRYGG	1 cut(s)	329
BstENI	CCTNNNNNAGG	1 cut(s)	892
BstF5I	GGATG	1 cut(s)	638
BstFNI	CGCG	3 cut(s)	348, 432, 726
BstHHI	GCGC	2 cut(s)	72, 1115
BstMAI	GTCTC	7 cut(s)	202, 252, 531, 715, 897, 930, 1074
BstMWI	GCNNNNNNNGC	1 cut(s)	1084
BstNI	CCWGG	5 cut(s)	219, 323, 483, 841, 1005
BstNSI	RCATGY	2 cut(s)	820, 1021
BstPAI	GACNNNNGTC	2 cut(s)	144, 523
BstSCI	CCNGG	6 cut(s)	217, 252, 321, 481, 839, 1003
BstSFI	CTRYAG	6 cut(s)	422, 748, 787, 859, 892, 967
BstUI	CGCG	3 cut(s)	348, 432, 726
BstV1I	GCAGC	1 cut(s)	545
BstX2I	RGATCY	8 cut(s)	268, 401, 602, 689, 770, 836, 941, 1133
BstYI	RGATCY	8 cut(s)	268, 401, 602, 689, 770, 836, 941, 1133
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	638
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	537
CfoI	GCGC	2 cut(s)	72, 1115
Cfr10I	RCCGGY	2 cut(s)	762, 906
Cfr13I	GGNCC	5 cut(s)	325, 427, 760, 765, 831
CseI	GACGC	4 cut(s)	134, 421, 675, 732
Csp6I	GTAC	4 cut(s)	471, 490, 646, 826
CspAI	ACCGGT	2 cut(s)	762, 906
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	4 cut(s)	330, 817, 879, 1018
CviJI	RGCY	9 cut(s)	183, 429, 499, 534, 558, 582, 618, 1002, 1143
CviKI_1	RGCY	9 cut(s)	183, 429, 499, 534, 558, 582, 618, 1002, 1143
CviQI	GTAC	4 cut(s)	471, 490, 646, 826
DdeI	CTNAG	2 cut(s)	210, 500
Eam1104I	CTCTTC	2 cut(s)	622, 895
EarI	CTCTTC	2 cut(s)	622, 895
EciI	GGCGGA	1 cut(s)	769
Eco130I	CCWWGG	3 cut(s)	329, 928, 1037
Eco31I	GGTCTC	1 cut(s)	897
Eco47I	GGWCC	4 cut(s)	325, 760, 765, 831
Eco72I	CACGTG	1 cut(s)	869
Eco88I	CYCGRG	1 cut(s)	510
EcoNI	CCTNNNNNAGG	1 cut(s)	892
EcoRII	CCWGG	5 cut(s)	217, 321, 481, 839, 1003
EcoT14I	CCWWGG	3 cut(s)	329, 928, 1037
ErhI	CCWWGG	3 cut(s)	329, 928, 1037
Esp3I	CGTCTC	1 cut(s)	715
FaeI	CATG	4 cut(s)	333, 820, 882, 1021
FaqI	GGGAC	2 cut(s)	773, 812
FatI	CATG	4 cut(s)	329, 816, 878, 1017
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	2 cut(s)	430, 559
FokI	GGATG	1 cut(s)	625
Fsp4HI	GCNGC	2 cut(s)	430, 559
FspBI	CTAG	4 cut(s)	177, 336, 407, 531
GlaI	GCGC	2 cut(s)	71, 1114
GluI	GCNGC	2 cut(s)	430, 559
GsuI	CTGGAG	4 cut(s)	293, 465, 1026, 1114
HaeIII	GGCC	1 cut(s)	429
HapII	CCGG	4 cut(s)	29, 253, 763, 907
HgaI	GACGC	4 cut(s)	134, 421, 675, 732
HhaI	GCGC	2 cut(s)	72, 1115
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	4 cut(s)	333, 820, 882, 1021
Hin6I	GCGC	2 cut(s)	70, 1113
HinP1I	GCGC	2 cut(s)	70, 1113
HinfI	GANTC	4 cut(s)	79, 214, 341, 672
HpaII	CCGG	4 cut(s)	29, 253, 763, 907
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	401, 592, 1074
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	5 cut(s)	150, 190, 462, 666, 669
HpyCH4III	ACNGT	4 cut(s)	227, 392, 442, 788
HpyCH4IV	ACGT	6 cut(s)	10, 457, 469, 781, 868, 1024
HpyCH4V	TGCA	3 cut(s)	46, 396, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1084
HpyF3I	CTNAG	2 cut(s)	210, 500
HpySE526I	ACGT	6 cut(s)	10, 457, 469, 781, 868, 1024
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	4 cut(s)	333, 820, 882, 1021
HspAI	GCGC	2 cut(s)	70, 1113
LmnI	GCTCC	1 cut(s)	1110
Lsp1109I	GCAGC	1 cut(s)	545
LweI	GCATC	3 cut(s)	196, 373, 405
MaeI	CTAG	4 cut(s)	177, 336, 407, 531
MaeII	ACGT	6 cut(s)	10, 457, 469, 781, 868, 1024
MaeIII	GTNAC	9 cut(s)	221, 235, 256, 301, 710, 782, 869, 962, 1020
MboII	GAAGA	3 cut(s)	639, 912, 1083
MflI	RGATCY	8 cut(s)	268, 401, 602, 689, 770, 836, 941, 1133
MhlI	GDGCHC	2 cut(s)	796, 868
MluCI	AATT	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	500
MspI	CCGG	4 cut(s)	29, 253, 763, 907
MspR9I	CCNGG	6 cut(s)	219, 254, 323, 483, 841, 1005
MvaI	CCWGG	5 cut(s)	219, 323, 483, 841, 1005
MvnI	CGCG	3 cut(s)	348, 432, 726
MwoI	GCNNNNNNNGC	1 cut(s)	1084
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	329
NlaIII	CATG	4 cut(s)	333, 820, 882, 1021
NlaIV	GGNNCC	2 cut(s)	327, 761
NmuCI	GTSAC	2 cut(s)	869, 1020
NspI	RCATGY	2 cut(s)	820, 1021
PaeR7I	CTCGAG	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	466
PfeI	GAWTC	4 cut(s)	79, 214, 341, 672
PflMI	CCANNNNNTGG	1 cut(s)	620
PfoI	TCCNGGA	2 cut(s)	321, 481
PinAI	ACCGGT	2 cut(s)	762, 906
PkrI	GCNGC	2 cut(s)	431, 560
PmaCI	CACGTG	1 cut(s)	869
PmlI	CACGTG	1 cut(s)	869
Ppu21I	YACGTR	3 cut(s)	782, 869, 1025
PshAI	GACNNNNGTC	2 cut(s)	144, 523
Psp6I	CCWGG	5 cut(s)	217, 321, 481, 839, 1003
PspCI	CACGTG	1 cut(s)	869
PspGI	CCWGG	5 cut(s)	217, 321, 481, 839, 1003
PspN4I	GGNNCC	2 cut(s)	327, 761
PspPI	GGNCC	5 cut(s)	325, 427, 760, 765, 831
PspXI	VCTCGAGB	1 cut(s)	510
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
PstI	CTGCAG	1 cut(s)	426
PsuI	RGATCY	8 cut(s)	268, 401, 602, 689, 770, 836, 941, 1133
RsaI	GTAC	4 cut(s)	472, 491, 647, 827
RsaNI	GTAC	4 cut(s)	471, 490, 646, 826
SatI	GCNGC	2 cut(s)	430, 559
Sau96I	GGNCC	5 cut(s)	325, 427, 760, 765, 831
ScaI	AGTACT	1 cut(s)	491
ScrFI	CCNGG	6 cut(s)	219, 254, 323, 483, 841, 1005
SduI	GDGCHC	2 cut(s)	796, 868
SfaNI	GCATC	3 cut(s)	196, 373, 405
SfcI	CTRYAG	6 cut(s)	422, 748, 787, 859, 892, 967
Sfr274I	CTCGAG	1 cut(s)	510
SinI	GGWCC	4 cut(s)	325, 760, 765, 831
SlaI	CTCGAG	1 cut(s)	510
SmlI	CTYRAG	3 cut(s)	100, 199, 510
SmoI	CTYRAG	3 cut(s)	100, 199, 510
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	5 cut(s)	348, 430, 544, 754, 820
SspMI	CTAG	4 cut(s)	177, 336, 407, 531
StyD4I	CCNGG	6 cut(s)	217, 252, 321, 481, 839, 1003
StyI	CCWWGG	3 cut(s)	329, 928, 1037
TaaI	ACNGT	4 cut(s)	227, 392, 442, 788
TaiI	ACGT	6 cut(s)	13, 460, 472, 784, 871, 1027
TaqI	TCGA	5 cut(s)	511, 577, 661, 686, 1106
TaqII	GACCGA	1 cut(s)	888
TasI	AATT	1 cut(s)	15
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	4 cut(s)	79, 214, 341, 672
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	869, 1020
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	2 cut(s)	869, 1020
TspDTI	ATGAA	2 cut(s)	8, 383
TspGWI	ACGGA	1 cut(s)	1126
TspRI	CASTG	1 cut(s)	445
Van91I	CCANNNNNTGG	1 cut(s)	620
VpaK11BI	GGWCC	4 cut(s)	325, 760, 765, 831
XagI	CCTNNNNNAGG	1 cut(s)	892
XapI	RAATTY	1 cut(s)	15
XbaI	TCTAGA	2 cut(s)	176, 406
XceI	RCATGY	2 cut(s)	820, 1021
XhoI	CTCGAG	1 cut(s)	510
XspI	CTAG	4 cut(s)	177, 336, 407, 531
ZraI	GACGTC	1 cut(s)	458
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.