Rroxscaffold_1G00013220

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
16272672 .. 16274324
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013220.1

Sequence Viewer

Length: 963 bp
ATGCGTTCTGATTTGATTTGCAGGAGTCCATCTGTGGAGAATCCTGGGAACAATTTGTATGTGACTGGATTGTCACCTCGGATTACAAGGAGAGAACTTGAGAAGCACTTTGCATCAGAGGGAAAAGTGATTGATGTTCATCTTGTGGTCGATCCATGGACAAGAGAATCTCGTGGATTTGGGTTTGTTACCATGGAAAATGTTGATGTCGCTGACCGCTGTATCAAATATTTAGATCGCTCTGTACTTGAAGGTCGTGTTATTACAGTGGAGAAGGCTAGAAGGCGGAGAGGAGAACCCCACTCCAGGAAGATATCTTGGGCTGCGAACAATTCGTGGTCTCCTTCCTACTCTCCTTACAGAAGGAGCTACAGTCGGTCGCCGAGTTACTCATCTGACCGAAGTAGGAGCAGATCGTACTCTCCACCCTACAGAAGGCAGAGATCTTACTCTCCTGACTATCGGCGGCAGAGGTCTTATTCTCGCTCACGCTCTCCTTACAGCAGGTCACCAGTGAGATACCGTGAGCGCTCCTATTCCCCTTATGGCAGGGAGTACTCACCAGATGACTCTTACTATGGAAGGAGGCGACGCTATCGCTCTGTCTCTCGCAGTGTTTCGCCCAGGTCCTGGAGGAGCTCAAGGAGGACTCGCTCCCCTATCTCACGTAGGCATAGGTGGACCTCAAGGAAGAGCTACTCGTGCAGTGTCTCTCCAAGGCCTAGGAGGGTTTCCCGGAGAAGTTACACACCTAGTGTTTCTCCTGAACCAAGGAGGAGGAGCTCAAGGAGGAGTTGCTCTCGGAGTGTGTCTCCTAGATACCGGAGCTCAAGGTCCCATAAGCGTTCAGCTTCGCGAAAATATTCCAGGAGCTGCTCTAGGAGTCGAAGCCCGAGTGTGAGTGCAAGTTCTAGATTTATGTCAAGATCTGATAGTCCTAGATCTACCTCATCCTCAACATGA

Protein Analysis

320

Amino Acids

37.74

Weight (kDa)

11.59

Isoelectric Point (pI)

130.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 19 - 89 3.1e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011676)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 630
AccII CGCG 1 cut(s) 856
AciI CCGC 3 cut(s) 217, 286, 466
AclWI GGATC 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 3 cut(s) 246, 419, 557
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 3 cut(s) 306, 435, 630
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 5 cut(s) 43, 305, 623, 629, 866
AluBI AGCT 7 cut(s) 369, 639, 696, 783, 828, 851, 873
AluI AGCT 7 cut(s) 369, 639, 696, 783, 828, 851, 873
Alw21I GWGCWC 3 cut(s) 641, 785, 830
Alw26I GTCTC 4 cut(s) 345, 610, 715, 816
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 2 cut(s) 630, 873
Ama87I CYCGRG 1 cut(s) 892
Aor51HI AGCGCT 1 cut(s) 530
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 2 cut(s) 323, 873
Asp700I GAANNNNTTC 1 cut(s) 862
AspA2I CCTAGG 1 cut(s) 722
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 3 cut(s) 627, 681, 834
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 3 cut(s) 66, 501, 552
AvaI CYCGRG 1 cut(s) 892
AvaII GGWCC 3 cut(s) 627, 681, 834
AvrII CCTAGG 1 cut(s) 722
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BanII GRGCYC 3 cut(s) 641, 785, 830
BauI CACGAG 2 cut(s) 171, 700
Bbv12I GWGCWC 3 cut(s) 641, 785, 830
BbvI GCAGC 2 cut(s) 310, 860
BccI CCATC 1 cut(s) 37
BciT130I CCWGG 5 cut(s) 45, 307, 625, 631, 868
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 4 cut(s) 345, 610, 715, 816
BfaI CTAG 7 cut(s) 279, 723, 753, 816, 879, 912, 939
BfmI CTRYAG 2 cut(s) 370, 430
BfoI RGCGCY 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 495
BglII AGATCT 3 cut(s) 443, 926, 941
BisI GCNGC 3 cut(s) 324, 467, 874
BlnI CCTAGG 1 cut(s) 722
BlsI GCNGC 3 cut(s) 325, 468, 875
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 6 cut(s) 45, 307, 625, 631, 736, 868
Bme18I GGWCC 3 cut(s) 627, 681, 834
BmeT110I CYCGRG 1 cut(s) 892
BmgT120I GGNCC 3 cut(s) 627, 681, 834
BmiI GGNNCC 1 cut(s) 836
BmrFI CCNGG 6 cut(s) 45, 307, 625, 631, 736, 868
BmsI GCATC 1 cut(s) 122
BplI GAGNNNNNCTC 4 cut(s) 784, 816, 796, 828
BpmI CTGGAG 2 cut(s) 289, 652
BpuEI CTTGAG 5 cut(s) 119, 625, 670, 769, 814
BpuMI CCSGG 1 cut(s) 736
BsaAI YACGTR 1 cut(s) 668
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 345
BsaJI CCNNGG 8 cut(s) 44, 77, 155, 192, 623, 716, 722, 770
BsaWI WCCGGW 1 cut(s) 822
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 435, 630
Bse1I ACTGG 2 cut(s) 70, 512
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 5 cut(s) 45, 307, 625, 631, 868
BseDI CCNNGG 8 cut(s) 44, 77, 155, 192, 623, 716, 722, 770
BseGI GGATG 1 cut(s) 950
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 3 cut(s) 306, 435, 630
BseNI ACTGG 2 cut(s) 70, 512
BseRI GAGGAG 5 cut(s) 306, 649, 790, 793, 805
BseXI GCAGC 2 cut(s) 310, 860
BsgI GTGCAG 1 cut(s) 724
Bsh1236I CGCG 1 cut(s) 856
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 721
BsiEI CGRYCG 1 cut(s) 380
BsiHKAI GWGCWC 3 cut(s) 641, 785, 830
BsiHKCI CYCGRG 1 cut(s) 892
BsiSI CCGG 2 cut(s) 736, 823
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 3 cut(s) 306, 435, 630
BsmAI GTCTC 4 cut(s) 345, 610, 715, 816
BsmFI GGGAC 1 cut(s) 820
BsnI GGCC 1 cut(s) 721
Bso31I GGTCTC 1 cut(s) 345
BsoBI CYCGRG 1 cut(s) 892
Bsp1286I GDGCHC 3 cut(s) 641, 785, 830
Bsp143I GATC 6 cut(s) 151, 235, 413, 443, 926, 941
Bsp19I CCATGG 2 cut(s) 155, 192
Bsp68I TCGCGA 1 cut(s) 856
BspACI CCGC 3 cut(s) 217, 286, 466
BspANI GGCC 1 cut(s) 721
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 836
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 345
BsrI ACTGG 2 cut(s) 70, 512
BssECI CCNNGG 8 cut(s) 44, 77, 155, 192, 623, 716, 722, 770
BssMI GATC 6 cut(s) 151, 235, 413, 443, 926, 941
BssSI CACGAG 2 cut(s) 171, 700
BssT1I CCWWGG 5 cut(s) 155, 192, 716, 722, 770
Bst2BI CACGAG 2 cut(s) 171, 700
Bst2UI CCWGG 5 cut(s) 45, 307, 625, 631, 868
Bst4CI ACNGT 3 cut(s) 268, 374, 524
Bst6I CTCTTC 1 cut(s) 686
BstBAI YACGTR 1 cut(s) 668
BstDSI CCRYGG 2 cut(s) 155, 192
BstEII GGTNACC 1 cut(s) 507
BstENI CCTNNNNNAGG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 950
BstFNI CGCG 1 cut(s) 856
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 6 cut(s) 154, 238, 416, 446, 929, 944
BstMAI GTCTC 4 cut(s) 345, 610, 715, 816
BstMBI GATC 6 cut(s) 151, 235, 413, 443, 926, 941
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 1 cut(s) 702
BstNI CCWGG 5 cut(s) 45, 307, 625, 631, 868
BstPI GGTNACC 1 cut(s) 507
BstSCI CCNGG 6 cut(s) 43, 305, 623, 629, 734, 866
BstSFI CTRYAG 2 cut(s) 370, 430
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 2 cut(s) 310, 860
BstX2I RGATCY 3 cut(s) 443, 926, 941
BstYI RGATCY 3 cut(s) 443, 926, 941
BsuRI GGCC 1 cut(s) 721
BtgI CCRYGG 2 cut(s) 155, 192
BtsCI GGATG 1 cut(s) 950
BtsI GCAGTG 2 cut(s) 619, 712
BtsIMutI CAGTG 4 cut(s) 273, 519, 619, 712
BtuMI TCGCGA 1 cut(s) 856
BveI ACCTGC 1 cut(s) 495
CaiI CAGNNNCTG 2 cut(s) 630, 873
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 3 cut(s) 627, 681, 834
CseI GACGC 1 cut(s) 600
Csp6I GTAC 3 cut(s) 245, 418, 556
CviAII CATG 3 cut(s) 156, 193, 960
CviQI GTAC 3 cut(s) 245, 418, 556
DpnI GATC 6 cut(s) 153, 237, 415, 445, 928, 943
DpnII GATC 6 cut(s) 151, 235, 413, 443, 926, 941
DraIII CACNNNGTG 1 cut(s) 755
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
EciI GGCGGA 1 cut(s) 301
Ecl136II GAGCTC 3 cut(s) 639, 783, 828
Eco130I CCWWGG 5 cut(s) 155, 192, 716, 722, 770
Eco147I AGGCCT 1 cut(s) 721
Eco24I GRGCYC 3 cut(s) 641, 785, 830
Eco31I GGTCTC 1 cut(s) 345
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 3 cut(s) 627, 681, 834
Eco47III AGCGCT 1 cut(s) 530
Eco53kI GAGCTC 3 cut(s) 639, 783, 828
Eco88I CYCGRG 1 cut(s) 892
Eco91I GGTNACC 1 cut(s) 507
EcoICRI GAGCTC 3 cut(s) 639, 783, 828
EcoNI CCTNNNNNAGG 1 cut(s) 433
EcoO109I RGGNCCY 2 cut(s) 627, 834
EcoO65I GGTNACC 1 cut(s) 507
EcoRII CCWGG 5 cut(s) 43, 305, 623, 629, 866
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 5 cut(s) 155, 192, 716, 722, 770
EcoT38I GRGCYC 3 cut(s) 641, 785, 830
ErhI CCWWGG 5 cut(s) 155, 192, 716, 722, 770
FaeI CATG 3 cut(s) 159, 196, 963
FaiI YATR 9 cut(s) 60, 157, 194, 546, 579, 675, 840, 920, 961
FaqI GGGAC 1 cut(s) 820
FatI CATG 3 cut(s) 155, 192, 959
Fnu4HI GCNGC 3 cut(s) 324, 467, 874
FokI GGATG 1 cut(s) 937
FriOI GRGCYC 3 cut(s) 641, 785, 830
Fsp4HI GCNGC 3 cut(s) 324, 467, 874
FspBI CTAG 7 cut(s) 279, 723, 753, 816, 879, 912, 939
GlaI GCGC 1 cut(s) 530
GluI GCNGC 3 cut(s) 324, 467, 874
GsuI CTGGAG 2 cut(s) 289, 652
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 1 cut(s) 721
HapII CCGG 2 cut(s) 736, 823
HgaI GACGC 1 cut(s) 600
HhaI GCGC 1 cut(s) 531
Hin1II CATG 3 cut(s) 159, 196, 963
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HinfI GANTC 6 cut(s) 25, 40, 167, 569, 649, 883
HpaII CCGG 2 cut(s) 736, 823
HphI GGTGA 3 cut(s) 66, 501, 552
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 6 cut(s) 10, 81, 118, 397, 804, 931
Hpy188III TCNNGA 5 cut(s) 455, 764, 855, 912, 924
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 1 cut(s) 594
HpyAV CCTTC 7 cut(s) 245, 268, 276, 354, 357, 429, 576
HpyCH4III ACNGT 3 cut(s) 268, 374, 524
HpyCH4IV ACGT 1 cut(s) 667
HpyCH4V TGCA 4 cut(s) 21, 113, 705, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 702
HpySE526I ACGT 1 cut(s) 667
Hsp92II CATG 3 cut(s) 159, 196, 963
HspAI GCGC 1 cut(s) 529
Kzo9I GATC 6 cut(s) 151, 235, 413, 443, 926, 941
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 8 cut(s) 366, 408, 536, 636, 659, 780, 825, 870
Lsp1109I GCAGC 2 cut(s) 310, 860
LweI GCATC 1 cut(s) 122
MaeI CTAG 7 cut(s) 279, 723, 753, 816, 879, 912, 939
MaeII ACGT 1 cut(s) 667
MaeIII GTNAC 6 cut(s) 61, 72, 187, 386, 507, 743
MalI GATC 6 cut(s) 153, 237, 415, 445, 928, 943
MboI GATC 6 cut(s) 151, 235, 413, 443, 926, 941
MboII GAAGA 2 cut(s) 322, 703
MflI RGATCY 3 cut(s) 443, 926, 941
MhlI GDGCHC 3 cut(s) 641, 785, 830
MluCI AATT 2 cut(s) 52, 331
MlyI GAGTC 4 cut(s) 34, 563, 643, 892
MroXI GAANNNNTTC 1 cut(s) 862
MspA1I CMGCKG 1 cut(s) 219
MspI CCGG 2 cut(s) 736, 823
MspR9I CCNGG 6 cut(s) 45, 307, 625, 631, 736, 868
MvaI CCWGG 5 cut(s) 45, 307, 625, 631, 868
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 1 cut(s) 702
NciI CCSGG 1 cut(s) 736
NcoI CCATGG 2 cut(s) 155, 192
NdeII GATC 6 cut(s) 151, 235, 413, 443, 926, 941
NlaIII CATG 3 cut(s) 159, 196, 963
NlaIV GGNNCC 1 cut(s) 836
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 3 cut(s) 61, 72, 507
NruI TCGCGA 1 cut(s) 856
PceI AGGCCT 1 cut(s) 721
PciSI GCTCTTC 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 862
PfeI GAWTC 2 cut(s) 40, 167
PflMI CCANNNNNTGG 1 cut(s) 630
PfoI TCCNGGA 4 cut(s) 305, 629, 734, 866
PkrI GCNGC 3 cut(s) 325, 468, 875
PleI GAGTC 4 cut(s) 33, 563, 643, 891
PpsI GAGTC 4 cut(s) 33, 563, 643, 891
Ppu21I YACGTR 1 cut(s) 668
PpuMI RGGWCCY 2 cut(s) 627, 834
Psp124BI GAGCTC 3 cut(s) 641, 785, 830
Psp5II RGGWCCY 2 cut(s) 627, 834
Psp6I CCWGG 5 cut(s) 43, 305, 623, 629, 866
PspEI GGTNACC 1 cut(s) 507
PspGI CCWGG 5 cut(s) 43, 305, 623, 629, 866
PspN4I GGNNCC 1 cut(s) 836
PspPI GGNCC 3 cut(s) 627, 681, 834
PspPPI RGGWCCY 2 cut(s) 627, 834
PstNI CAGNNNCTG 2 cut(s) 630, 873
PsuI RGATCY 3 cut(s) 443, 926, 941
RruI TCGCGA 1 cut(s) 856
RsaI GTAC 3 cut(s) 246, 419, 557
RsaNI GTAC 3 cut(s) 245, 418, 556
SacI GAGCTC 3 cut(s) 641, 785, 830
SapI GCTCTTC 1 cut(s) 686
SatI GCNGC 3 cut(s) 324, 467, 874
Sau3AI GATC 6 cut(s) 151, 235, 413, 443, 926, 941
Sau96I GGNCC 3 cut(s) 627, 681, 834
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 4 cut(s) 34, 563, 643, 892
ScrFI CCNGG 6 cut(s) 45, 307, 625, 631, 736, 868
SduI GDGCHC 3 cut(s) 641, 785, 830
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 2 cut(s) 370, 430
SinI GGWCC 3 cut(s) 627, 681, 834
SmlI CTYRAG 5 cut(s) 98, 640, 685, 784, 829
SmoI CTYRAG 5 cut(s) 98, 640, 685, 784, 829
Sse9I AATT 2 cut(s) 52, 331
SseBI AGGCCT 1 cut(s) 721
SsiI CCGC 3 cut(s) 217, 286, 466
SspI AATATT 2 cut(s) 230, 863
SspMI CTAG 7 cut(s) 279, 723, 753, 816, 879, 912, 939
SstI GAGCTC 3 cut(s) 641, 785, 830
StuI AGGCCT 1 cut(s) 721
StyD4I CCNGG 6 cut(s) 43, 305, 623, 629, 734, 866
StyI CCWWGG 5 cut(s) 155, 192, 716, 722, 770
TaaI ACNGT 3 cut(s) 268, 374, 524
TaiI ACGT 1 cut(s) 670
TaqI TCGA 2 cut(s) 150, 886
TaqII GACCGA 2 cut(s) 366, 414
TasI AATT 2 cut(s) 52, 331
TatI WGTACW 2 cut(s) 244, 555
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 2 cut(s) 40, 167
TscAI CASTG 4 cut(s) 273, 519, 619, 712
TseFI GTSAC 3 cut(s) 61, 72, 507
TseI GCWGC 2 cut(s) 323, 873
Tsp45I GTSAC 3 cut(s) 61, 72, 507
TspDTI ATGAA 1 cut(s) 128
TspRI CASTG 4 cut(s) 273, 519, 619, 712
Van91I CCANNNNNTGG 1 cut(s) 630
VpaK11BI GGWCC 3 cut(s) 627, 681, 834
XagI CCTNNNNNAGG 1 cut(s) 433
XbaI TCTAGA 1 cut(s) 911
XmaJI CCTAGG 1 cut(s) 722
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 7 cut(s) 279, 723, 753, 816, 879, 912, 939
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.