FvH4_3g37890

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
32441684 .. 32444560
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37890.t2

Sequence Viewer

Length: 927 bp
ATGTCGTACTCGAGAAGGTCAAGGTACTCTCCCTCTCCTTCGCCTAAGCGATACAGGTCTCCATCTCCTTCCCCAAGGCGATACAGGTCCATTTCGCGGTCCGTCTCGAGGTCCATGTCCAGATCAAGGAGCCCATCTGTGGAGAATCCTGGGAACAATCTGTATGTGACTGGATTATCACCTCGGATCACAAGGAGAGAACTTGAGAAGCATTTTGCGTCCGAGGGAAAAGTGATTGATGTCCATCTTGTAGTTGATCCATGGACAAGAGAATCTCGTGGATTTGGGTTTGTTACCATGGAAAATGTTAATGTGGCTGACCGCTGCATCAAATATTTAGATCGCTCTGTTCTTGAAGGTCGTGTGATTACAGTGGAGAAGGCTAGAAGGCGGAGAGGGCGAACCCCCACTCCAGGAAGGTATCTTGGTCTGCGAACAATTCGTGGGCGCCGGCGAACCCCTAGCTACTCCCCACCTCGCAGGTCTCCTACCTACTCTCCTTACAGAAGGAGCTACAGTCGATCGCCCGGTTACTCATCTGACCGAAGTAGGAGCAGATCATACTCTCCTCCATACAGAAGGCGGAGATCTTACTCTCCTGACTATAAGAGGCGGCGGTCTTACTCTCCTGACTATAGGAGGCGCAGGTCTTACTCTCGCTCATGTTCTCCTTACAGCAGGTCACCAGTGAGATACCGTACCGGAGGAGCTCAAGGAGGAGCTACTCACGCAGTGTCTCTCCAAGGCCTAGGAGGGTTTCTCGGAGAAGTTACTCACCTAGTGTATCTCCTGAACCAAGGAGGAGAAGCTCAAGGAGGAGTTACTCTCGGAGTGCTTCTCCTAGATACAGGGGCTCAAAGTCCCACAAGGGTTCAGCCCTGCGAAAATACTCCAGGAGCTGCTCTAGGAGTCGAAGTCCGAGTGTGA

Protein Analysis

309

Amino Acids

34.98

Weight (kDa)

11.39

Isoelectric Point (pI)

107.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 54 - 124 1.2e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011676)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 471, 636, 669
AccB1I GGYRCC 1 cut(s) 447
AccII CGCG 1 cut(s) 97
AciI CCGC 6 cut(s) 97, 322, 391, 583, 613, 616
AclWI GGATC 2 cut(s) 194, 251
AcyI GRCGYC 1 cut(s) 448
AdeI CACNNNGTG 2 cut(s) 733, 781
AfaI GTAC 3 cut(s) 8, 26, 700
AfiI CCNNNNNNNGG 5 cut(s) 96, 108, 126, 139, 413
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 3 cut(s) 148, 412, 892
AloI GAACNNNNNNTCC 2 cut(s) 394, 426
AluBI AGCT 6 cut(s) 465, 513, 710, 722, 809, 899
AluI AGCT 6 cut(s) 465, 513, 710, 722, 809, 899
Alw21I GWGCWC 1 cut(s) 712
Alw26I GTCTC 4 cut(s) 63, 109, 489, 741
AlwI GGATC 2 cut(s) 194, 251
AlwNI CAGNNNCTG 1 cut(s) 899
Ama87I CYCGRG 2 cut(s) 10, 106
AoxI GGCC 1 cut(s) 745
ApeKI GCWGC 2 cut(s) 324, 899
AspA2I CCTAGG 1 cut(s) 748
AspLEI GCGC 2 cut(s) 450, 645
AspS9I GGNCC 3 cut(s) 87, 99, 111
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 3 cut(s) 171, 675, 767
AvaI CYCGRG 2 cut(s) 10, 106
AvaII GGWCC 3 cut(s) 87, 99, 111
AvrII CCTAGG 1 cut(s) 748
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 3 cut(s) 134, 712, 856
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 2 cut(s) 311, 886
BccI CCATC 3 cut(s) 70, 142, 252
BciT130I CCWGG 3 cut(s) 150, 414, 894
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 4 cut(s) 63, 109, 489, 741
BfaI CTAG 6 cut(s) 384, 462, 749, 779, 842, 905
BfmI CTRYAG 2 cut(s) 514, 634
BfoI RGCGCY 1 cut(s) 451
BfuAI ACCTGC 3 cut(s) 471, 636, 669
BglII AGATCT 1 cut(s) 587
BisI GCNGC 3 cut(s) 325, 614, 900
BlnI CCTAGG 1 cut(s) 748
BlsI GCNGC 3 cut(s) 326, 615, 901
Bme1390I CCNGG 4 cut(s) 150, 414, 528, 894
Bme18I GGWCC 3 cut(s) 87, 99, 111
BmeT110I CYCGRG 2 cut(s) 10, 106
BmgT120I GGNCC 3 cut(s) 87, 99, 111
BmiI GGNNCC 2 cut(s) 131, 449
BmrFI CCNGG 4 cut(s) 150, 414, 528, 894
BmsI GCATC 1 cut(s) 336
BplI GAGNNNNNCTC 6 cut(s) 744, 776, 810, 842, 822, 854
BpmI CTGGAG 2 cut(s) 396, 876
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 3 cut(s) 224, 696, 795
BpuMI CCSGG 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 448
BsaI GGTCTC 2 cut(s) 63, 489
BsaJI CCNNGG 9 cut(s) 74, 149, 182, 222, 260, 297, 742, 748, 796
BsaWI WCCGGW 1 cut(s) 701
BsaXI ACNNNNNCTCC 7 cut(s) 394, 424, 481, 502, 511, 532, 900
Bsc4I CCNNNNNNNGG 5 cut(s) 96, 108, 126, 139, 413
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 2 cut(s) 175, 686
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 3 cut(s) 150, 414, 894
BseDI CCNNGG 9 cut(s) 74, 149, 182, 222, 260, 297, 742, 748, 796
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 5 cut(s) 96, 108, 126, 139, 413
BseNI ACTGG 2 cut(s) 175, 686
BseRI GAGGAG 5 cut(s) 558, 720, 732, 816, 831
BseXI GCAGC 2 cut(s) 311, 886
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 524
BshFI GGCC 1 cut(s) 747
BshNI GGYRCC 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 712
BsiHKCI CYCGRG 2 cut(s) 10, 106
BsiSI CCGG 3 cut(s) 451, 528, 702
BslFI GGGAC 1 cut(s) 846
BslI CCNNNNNNNGG 5 cut(s) 96, 108, 126, 139, 413
BsmAI GTCTC 4 cut(s) 63, 109, 489, 741
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 846
BsnI GGCC 1 cut(s) 747
Bso31I GGTCTC 2 cut(s) 63, 489
BsoBI CYCGRG 2 cut(s) 10, 106
Bsp1286I GDGCHC 3 cut(s) 134, 712, 856
Bsp143I GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
Bsp19I CCATGG 2 cut(s) 260, 297
BspACI CCGC 6 cut(s) 97, 322, 391, 583, 613, 616
BspANI GGCC 1 cut(s) 747
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 131, 449
BspMI ACCTGC 3 cut(s) 471, 636, 669
BspPI GGATC 2 cut(s) 194, 251
BspT107I GGYRCC 1 cut(s) 447
BspTNI GGTCTC 2 cut(s) 63, 489
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 2 cut(s) 175, 686
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 9 cut(s) 74, 149, 182, 222, 260, 297, 742, 748, 796
BssMI GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
BssNI GRCGYC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 6 cut(s) 74, 260, 297, 742, 748, 796
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 3 cut(s) 150, 414, 894
Bst4CI ACNGT 3 cut(s) 373, 518, 698
BstACI GRCGYC 1 cut(s) 448
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 2 cut(s) 260, 297
BstEII GGTNACC 1 cut(s) 681
BstFNI CGCG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 2 cut(s) 450, 645
BstKTI GATC 7 cut(s) 125, 189, 259, 343, 524, 560, 590
BstMAI GTCTC 4 cut(s) 63, 109, 489, 741
BstMBI GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
BstMCI CGRYCG 1 cut(s) 524
BstMWI GCNNNNNNNGC 2 cut(s) 397, 728
BstNI CCWGG 3 cut(s) 150, 414, 894
BstPI GGTNACC 1 cut(s) 681
BstSCI CCNGG 4 cut(s) 148, 412, 526, 892
BstSFI CTRYAG 2 cut(s) 514, 634
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 311, 886
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
BsuRI GGCC 1 cut(s) 747
BtgI CCRYGG 2 cut(s) 260, 297
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 378, 693, 738
BveI ACCTGC 3 cut(s) 471, 636, 669
Cac8I GCNNGC 1 cut(s) 452
CaiI CAGNNNCTG 1 cut(s) 899
CfoI GCGC 2 cut(s) 450, 645
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 3 cut(s) 87, 99, 111
CpoI CGGWCCG 1 cut(s) 99
CseI GACGC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 7, 25, 699
CspI CGGWCCG 1 cut(s) 99
CviAII CATG 4 cut(s) 115, 261, 298, 663
CviQI GTAC 3 cut(s) 7, 25, 699
DdeI CTNAG 1 cut(s) 45
DinI GGCGCC 1 cut(s) 449
DpnI GATC 7 cut(s) 124, 188, 258, 342, 523, 559, 589
DpnII GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
DraIII CACNNNGTG 2 cut(s) 733, 781
EciI GGCGGA 2 cut(s) 406, 598
Ecl136II GAGCTC 1 cut(s) 710
Eco130I CCWWGG 6 cut(s) 74, 260, 297, 742, 748, 796
Eco147I AGGCCT 1 cut(s) 747
Eco24I GRGCYC 3 cut(s) 134, 712, 856
Eco31I GGTCTC 2 cut(s) 63, 489
Eco47I GGWCC 3 cut(s) 87, 99, 111
Eco53kI GAGCTC 1 cut(s) 710
Eco88I CYCGRG 2 cut(s) 10, 106
Eco91I GGTNACC 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 681
EcoRII CCWGG 3 cut(s) 148, 412, 892
EcoT14I CCWWGG 6 cut(s) 74, 260, 297, 742, 748, 796
EcoT38I GRGCYC 3 cut(s) 134, 712, 856
EgeI GGCGCC 1 cut(s) 449
EheI GGCGCC 1 cut(s) 449
ErhI CCWWGG 6 cut(s) 74, 260, 297, 742, 748, 796
Esp3I CGTCTC 1 cut(s) 109
FaeI CATG 4 cut(s) 118, 264, 301, 666
FaiI YATR 9 cut(s) 116, 165, 262, 299, 562, 574, 606, 636, 664
FaqI GGGAC 1 cut(s) 846
FatI CATG 4 cut(s) 114, 260, 297, 662
Fnu4HI GCNGC 3 cut(s) 325, 614, 900
FriOI GRGCYC 3 cut(s) 134, 712, 856
Fsp4HI GCNGC 3 cut(s) 325, 614, 900
FspBI CTAG 6 cut(s) 384, 462, 749, 779, 842, 905
GlaI GCGC 2 cut(s) 449, 644
GluI GCNGC 3 cut(s) 325, 614, 900
GsuI CTGGAG 2 cut(s) 396, 876
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 1 cut(s) 747
HapII CCGG 3 cut(s) 451, 528, 702
HgaI GACGC 1 cut(s) 207
HhaI GCGC 2 cut(s) 450, 645
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 4 cut(s) 118, 264, 301, 666
Hin6I GCGC 2 cut(s) 448, 643
HinP1I GCGC 2 cut(s) 448, 643
HinfI GANTC 3 cut(s) 145, 272, 909
HpaII CCGG 3 cut(s) 451, 528, 702
HphI GGTGA 3 cut(s) 171, 675, 767
Hpy188I TCNGA 6 cut(s) 186, 223, 541, 764, 830, 920
Hpy188III TCNNGA 7 cut(s) 12, 106, 120, 353, 599, 629, 790
HpyAV CCTTC 9 cut(s) 9, 48, 78, 350, 373, 381, 411, 501, 573
HpyCH4III ACNGT 3 cut(s) 373, 518, 698
HpyCH4V TGCA 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 2 cut(s) 397, 728
HpyF3I CTNAG 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 4 cut(s) 118, 264, 301, 666
HspAI GCGC 2 cut(s) 448, 643
KasI GGCGCC 1 cut(s) 447
KroI GCCGGC 1 cut(s) 450
KroNI GCCGGC 1 cut(s) 452
Kzo9I GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
LmnI GCTCC 6 cut(s) 129, 510, 552, 707, 719, 896
Lsp1109I GCAGC 2 cut(s) 311, 886
LweI GCATC 1 cut(s) 336
MaeI CTAG 6 cut(s) 384, 462, 749, 779, 842, 905
MaeIII GTNAC 6 cut(s) 166, 292, 530, 681, 769, 820
MalI GATC 7 cut(s) 124, 188, 258, 342, 523, 559, 589
MboI GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 3 cut(s) 134, 712, 856
MluCI AATT 1 cut(s) 438
Mly113I GGCGCC 1 cut(s) 448
MlyI GAGTC 1 cut(s) 918
MreI CGCCGGCG 1 cut(s) 450
MroNI GCCGGC 1 cut(s) 450
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 3 cut(s) 451, 528, 702
MspR9I CCNGG 4 cut(s) 150, 414, 528, 894
MvaI CCWGG 3 cut(s) 150, 414, 894
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 397, 728
NaeI GCCGGC 1 cut(s) 452
NarI GGCGCC 1 cut(s) 448
NciI CCSGG 1 cut(s) 528
NcoI CCATGG 2 cut(s) 260, 297
NdeII GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
NgoMIV GCCGGC 1 cut(s) 450
NlaIII CATG 4 cut(s) 118, 264, 301, 666
NlaIV GGNNCC 2 cut(s) 131, 449
NmuCI GTSAC 2 cut(s) 166, 681
PaeR7I CTCGAG 2 cut(s) 10, 106
PceI AGGCCT 1 cut(s) 747
PdiI GCCGGC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 145, 272
PfoI TCCNGGA 2 cut(s) 412, 892
PkrI GCNGC 3 cut(s) 326, 615, 901
Ple19I CGATCG 1 cut(s) 524
PleI GAGTC 1 cut(s) 917
PluTI GGCGCC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 917
Psp124BI GAGCTC 1 cut(s) 712
Psp6I CCWGG 3 cut(s) 148, 412, 892
PspEI GGTNACC 1 cut(s) 681
PspGI CCWGG 3 cut(s) 148, 412, 892
PspN4I GGNNCC 2 cut(s) 131, 449
PspPI GGNCC 3 cut(s) 87, 99, 111
PstNI CAGNNNCTG 1 cut(s) 899
PsuI RGATCY 1 cut(s) 587
PvuI CGATCG 1 cut(s) 524
RsaI GTAC 3 cut(s) 8, 26, 700
RsaNI GTAC 3 cut(s) 7, 25, 699
Rsr2I CGGWCCG 1 cut(s) 99
RsrII CGGWCCG 1 cut(s) 99
SacI GAGCTC 1 cut(s) 712
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 325, 614, 900
Sau3AI GATC 7 cut(s) 122, 186, 256, 340, 521, 557, 587
Sau96I GGNCC 3 cut(s) 87, 99, 111
SchI GAGTC 1 cut(s) 918
ScrFI CCNGG 4 cut(s) 150, 414, 528, 894
SduI GDGCHC 3 cut(s) 134, 712, 856
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 2 cut(s) 514, 634
SfoI GGCGCC 1 cut(s) 449
Sfr274I CTCGAG 2 cut(s) 10, 106
SgrAI CRCCGGYG 1 cut(s) 450
SinI GGWCC 3 cut(s) 87, 99, 111
SlaI CTCGAG 2 cut(s) 10, 106
SmlI CTYRAG 5 cut(s) 10, 106, 203, 711, 810
SmoI CTYRAG 5 cut(s) 10, 106, 203, 711, 810
Sse9I AATT 1 cut(s) 438
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 6 cut(s) 97, 322, 391, 583, 613, 616
SspDI GGCGCC 1 cut(s) 447
SspI AATATT 1 cut(s) 335
SspMI CTAG 6 cut(s) 384, 462, 749, 779, 842, 905
SstI GAGCTC 1 cut(s) 712
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 4 cut(s) 148, 412, 526, 892
StyI CCWWGG 6 cut(s) 74, 260, 297, 742, 748, 796
TaaI ACNGT 3 cut(s) 373, 518, 698
TaqI TCGA 4 cut(s) 11, 107, 520, 912
TaqII GACCGA 1 cut(s) 558
TasI AATT 1 cut(s) 438
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 2 cut(s) 145, 272
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 378, 693, 738
TseFI GTSAC 2 cut(s) 166, 681
TseI GCWGC 2 cut(s) 324, 899
Tsp45I GTSAC 2 cut(s) 166, 681
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 3 cut(s) 378, 693, 738
VpaK11BI GGWCC 3 cut(s) 87, 99, 111
XhoI CTCGAG 2 cut(s) 10, 106
XmaJI CCTAGG 1 cut(s) 748
XspI CTAG 6 cut(s) 384, 462, 749, 779, 842, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.