Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011676

Physical Location & Seq

Genomic Coordinates Reverse (-)

4335329 .. 4338057

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G062800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCGTACTCCAGAAGGTCAAGGTATTCCTACTCTCCTTCCCCGAAACGGTACAGTAGGTCCCTTTCGAGGTCTGTTTCGAGGTCGAGGTCAAGGTCAAGAAGCCCATCAGTTGAGAATCCTGGGAACAATTTGTATGTGACTGGATTATCACCTCGGATTACAAAGAGAGAACTCGAGAAGCACTTTGCATCTGAGGGAAAAGTCATTGATGTTCATCTTGTGGTTGATCCATGGACAAGAGAATCTCGTGGATTTGGGTTTGTTACAATGGAAAATGTTGATGAGGCTGACCGCTGTATTAAGTATTTAGATCGCTCTGTACTTGAAGGCCGTGTCATTACAGTGGAGAGGGCTAGAAGGCGGAGAGGGCGAACTCCTACTCCCGGAAGGTATCTTGGGCTGCGAACAATTCGTGTGCGTCGACGAACTCCTAGTTACTCACCTCCTCGTAGATCTCCTACCTACTCACCTTATCGGAGGAGCTGTAGCCAGTCACCTCATTCATCAGATCGAAGCAGGAGCAGGTCATACTCTCCACACTACAGGAGGAGGAGATCATACTCTCCTGACTATAGTCGGCATAGATATTACTCTCGGTCTCGCACCCCTTACAGCAGGTCACCAGTGAGACATCATGCTCGGGGCTACTCTCCATATGACTCCAGGGAGTATTCACCAGATGACTCTTACTATGGGAGGAGGCATCGTTACAGGGAGTATTCACCAGATGACTCGTACTACGGAAGGAGGCATTGCTATCGTTATGTTTCTCCTAGTGTCTCTCCAAGGGCAAGAAGGAGATCAAGGAGGAGCTACTCACCCAGCATCTCTCCCAGGCCCAGGAGGAGTTACAAGAGGAGCTACTCACCCAGTGTTTCGCCCAGGCCTAGGAGGACATCTAGGAGGAGTTACTCCCCCTACTCCCCTAGTCCTTCGCCCAGGCCTAGGAGGTCCTCCAGGAGTATTTACTCCCCTAGTGTTTCACCTGAACCAAAAAAGAAGAGGTCAGGGAAGAGTTACTCCCGAAGTGTATCTCCTAGACGCAGGAGCTCAATTTCTTACAGGGAATCGTCTAGGAGAAGCTACTTGAGACATCGGAGTCCGAGTGTGAGTGCGAGTTCCAGATATATTTCAAGATCTGCTAGTCCTAGTTCTACTTCACCTTCATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006325 GO:0006396 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043484 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

392

Amino Acids

46.09

Weight (kDa)

11.5

Isoelectric Point (pI)

138.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07350 AT1G07350 AT1G07350 AT1G07350 AT1G07350 AT1G07350
fragaria_vesca	FvH4_3g37890 FvH4_3g37890 FvH4_3g37890
malus_domestica	MD11G1082400.v1.1
prunus_persica	Prupe.6G062800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0068121
rosa_laevigata	RLG00000035958
rosa_multiflora	Rmu_sc0000435.1_g000014 Rmu_sc0009382.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013220
rosa_rugosa	Rorug05G0388600
rosa_samantha	Rh5CG486900
rosa_wichuraiana	Rw5G041750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1101
Acc36I	ACCTGC	2 cut(s)	516, 609
AccI	GTMKAC	1 cut(s)	424
AciI	CCGC	2 cut(s)	295, 364
AclWI	GGATC	1 cut(s)	224
AdeI	CACNNNGTG	1 cut(s)	875
AfaI	GTAC	4 cut(s)	8, 53, 324, 740
AfiI	CCNNNNNNNGG	6 cut(s)	48, 69, 386, 843, 891, 948
AgsI	TTSAA	2 cut(s)	329, 1137
AjnI	CCWGG	7 cut(s)	121, 665, 836, 842, 884, 941, 959
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	5 cut(s)	486, 816, 864, 1053, 1086
AluI	AGCT	5 cut(s)	486, 816, 864, 1053, 1086
Alw21I	GWGCWC	1 cut(s)	1055
Alw26I	GTCTC	4 cut(s)	606, 625, 787, 1087
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	2 cut(s)	176, 642
AoxI	GGCC	4 cut(s)	331, 839, 887, 944
ApeKI	GCWGC	1 cut(s)	403
AspA2I	CCTAGG	2 cut(s)	890, 947
AspS9I	GGNCC	3 cut(s)	60, 840, 954
AsuC2I	CCSGG	1 cut(s)	387
AvaI	CYCGRG	2 cut(s)	176, 642
AvaII	GGWCC	2 cut(s)	60, 954
AvrII	CCTAGG	2 cut(s)	890, 947
BanII	GRGCYC	1 cut(s)	1055
BauI	CACGAG	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	1055
BbvI	GCAGC	1 cut(s)	390
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	1 cut(s)	318
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	7 cut(s)	123, 667, 838, 844, 886, 943, 961
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	4 cut(s)	606, 625, 787, 1087
BfmI	CTRYAG	3 cut(s)	487, 544, 574
BfuAI	ACCTGC	2 cut(s)	516, 609
BglII	AGATCT	2 cut(s)	455, 1139
BisI	GCNGC	1 cut(s)	404
BlnI	CCTAGG	2 cut(s)	890, 947
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	8 cut(s)	123, 387, 667, 838, 844, 886, 943, 961
Bme18I	GGWCC	2 cut(s)	60, 954
BmeT110I	CYCGRG	2 cut(s)	176, 642
BmgT120I	GGNCC	3 cut(s)	60, 840, 954
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	8 cut(s)	123, 387, 667, 838, 844, 886, 943, 961
BmrI	ACTGGG	1 cut(s)	867
BmsI	GCATC	3 cut(s)	200, 715, 837
BmuI	ACTGGG	1 cut(s)	867
BoxI	GACNNNNGTC	1 cut(s)	576
BpmI	CTGGAG	2 cut(s)	649, 943
BpuEI	CTTGAG	1 cut(s)	1111
BpuMI	CCSGG	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	606
BsaXI	ACNNNNNCTCC	8 cut(s)	367, 397, 472, 502, 694, 724, 1093, 1123
Bsc4I	CCNNNNNNNGG	6 cut(s)	48, 69, 386, 843, 891, 948
Bse1I	ACTGG	4 cut(s)	148, 493, 626, 873
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	7 cut(s)	123, 667, 838, 844, 886, 943, 961
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	6 cut(s)	48, 69, 386, 843, 891, 948
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	4 cut(s)	148, 493, 626, 873
BseRI	GAGGAG	9 cut(s)	438, 496, 565, 568, 715, 826, 862, 874, 922
BseXI	GCAGC	1 cut(s)	390
BseYI	CCCAGC	1 cut(s)	824
BshFI	GGCC	4 cut(s)	333, 841, 889, 946
BsiHKAI	GWGCWC	1 cut(s)	1055
BsiHKCI	CYCGRG	2 cut(s)	176, 642
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	6 cut(s)	48, 69, 386, 843, 891, 948
BsmAI	GTCTC	4 cut(s)	606, 625, 787, 1087
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	4 cut(s)	333, 841, 889, 946
Bso31I	GGTCTC	1 cut(s)	606
BsoBI	CYCGRG	2 cut(s)	176, 642
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	2 cut(s)	295, 364
BspANI	GGCC	4 cut(s)	333, 841, 889, 946
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	62
BspMI	ACCTGC	2 cut(s)	516, 609
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	754
BsrI	ACTGG	4 cut(s)	148, 493, 626, 873
BssMI	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	4 cut(s)	233, 788, 890, 947
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	7 cut(s)	123, 667, 838, 844, 886, 943, 961
Bst4CI	ACNGT	3 cut(s)	51, 56, 346
Bst6I	CTCTTC	2 cut(s)	998, 1010
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	233
BstEII	GGTNACC	1 cut(s)	621
BstKTI	GATC	7 cut(s)	232, 316, 458, 514, 560, 806, 1142
BstMAI	GTCTC	4 cut(s)	606, 625, 787, 1087
BstMBI	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	7 cut(s)	123, 667, 838, 844, 886, 943, 961
BstPAI	GACNNNNGTC	1 cut(s)	576
BstPI	GGTNACC	1 cut(s)	621
BstSCI	CCNGG	8 cut(s)	121, 385, 665, 836, 842, 884, 941, 959
BstSFI	CTRYAG	3 cut(s)	487, 544, 574
BstV1I	GCAGC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	455, 1139
BstYI	RGATCY	2 cut(s)	455, 1139
BsuRI	GGCC	4 cut(s)	333, 841, 889, 946
BtgI	CCRYGG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	351, 633, 880
BveI	ACCTGC	2 cut(s)	516, 609
Cfr13I	GGNCC	3 cut(s)	60, 840, 954
CseI	GACGC	2 cut(s)	410, 1053
Csp6I	GTAC	4 cut(s)	7, 52, 323, 739
CviAII	CATG	2 cut(s)	234, 638
CviQI	GTAC	4 cut(s)	7, 52, 323, 739
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	7 cut(s)	231, 315, 457, 513, 559, 805, 1141
DpnII	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
DraIII	CACNNNGTG	1 cut(s)	875
DrdI	GACNNNNNNGTC	1 cut(s)	1101
DseDI	GACNNNNNNGTC	1 cut(s)	1101
Eam1104I	CTCTTC	2 cut(s)	998, 1010
EarI	CTCTTC	2 cut(s)	998, 1010
EciI	GGCGGA	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	1053
Eco130I	CCWWGG	4 cut(s)	233, 788, 890, 947
Eco147I	AGGCCT	2 cut(s)	889, 946
Eco24I	GRGCYC	1 cut(s)	1055
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	60, 954
Eco53kI	GAGCTC	1 cut(s)	1053
Eco88I	CYCGRG	2 cut(s)	176, 642
Eco91I	GGTNACC	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	1053
EcoO109I	RGGNCCY	2 cut(s)	60, 954
EcoO65I	GGTNACC	1 cut(s)	621
EcoRII	CCWGG	7 cut(s)	121, 665, 836, 842, 884, 941, 959
EcoT14I	CCWWGG	4 cut(s)	233, 788, 890, 947
EcoT38I	GRGCYC	1 cut(s)	1055
ErhI	CCWWGG	4 cut(s)	233, 788, 890, 947
FaeI	CATG	2 cut(s)	237, 641
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	233, 637
FauNDI	CATATG	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	1055
Fsp4HI	GCNGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	404
GsaI	CCCAGC	1 cut(s)	828
GsuI	CTGGAG	2 cut(s)	649, 943
HaeIII	GGCC	4 cut(s)	333, 841, 889, 946
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	2 cut(s)	410, 1053
Hin1II	CATG	2 cut(s)	237, 641
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	7 cut(s)	118, 245, 662, 686, 734, 1070, 1102
HpaII	CCGG	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	6 cut(s)	159, 196, 480, 511, 1101, 1107
Hpy188III	TCNNGA	8 cut(s)	12, 99, 178, 569, 1026, 1125, 1137, 1173
Hpy8I	GTNNAC	1 cut(s)	425
Hpy99I	CGWCG	2 cut(s)	426, 429
HpyAV	CCTTC	9 cut(s)	9, 48, 323, 354, 384, 741, 792, 945, 1176
HpyCH4III	ACNGT	3 cut(s)	51, 56, 346
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	237, 641
Kzo9I	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
LmnI	GCTCC	5 cut(s)	483, 522, 813, 861, 1050
Lsp1109I	GCAGC	1 cut(s)	390
LweI	GCATC	3 cut(s)	200, 715, 837
MaeIII	GTNAC	9 cut(s)	139, 265, 437, 495, 621, 710, 851, 911, 1019
MalI	GATC	7 cut(s)	231, 315, 457, 513, 559, 805, 1141
MboI	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
MboII	GAAGA	2 cut(s)	1015, 1027
MflI	RGATCY	2 cut(s)	455, 1139
MhlI	GDGCHC	1 cut(s)	1055
MluCI	AATT	3 cut(s)	130, 411, 1056
MlyI	GAGTC	4 cut(s)	656, 680, 728, 1111
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	8 cut(s)	123, 387, 667, 838, 844, 886, 943, 961
MvaI	CCWGG	7 cut(s)	123, 667, 838, 844, 886, 943, 961
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	387
NcoI	CCATGG	1 cut(s)	233
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
NlaIII	CATG	2 cut(s)	237, 641
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	3 cut(s)	139, 495, 621
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	2 cut(s)	889, 946
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PfeI	GAWTC	3 cut(s)	118, 245, 1070
PfoI	TCCNGGA	2 cut(s)	385, 959
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	4 cut(s)	656, 680, 728, 1110
PpsI	GAGTC	4 cut(s)	656, 680, 728, 1110
PpuMI	RGGWCCY	2 cut(s)	60, 954
PshAI	GACNNNNGTC	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	1055
Psp5II	RGGWCCY	2 cut(s)	60, 954
Psp6I	CCWGG	7 cut(s)	121, 665, 836, 842, 884, 941, 959
PspEI	GGTNACC	1 cut(s)	621
PspFI	CCCAGC	1 cut(s)	824
PspGI	CCWGG	7 cut(s)	121, 665, 836, 842, 884, 941, 959
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	60, 840, 954
PspPPI	RGGWCCY	2 cut(s)	60, 954
PsuI	RGATCY	2 cut(s)	455, 1139
RsaI	GTAC	4 cut(s)	8, 53, 324, 740
RsaNI	GTAC	4 cut(s)	7, 52, 323, 739
RseI	CAYNNNNRTG	1 cut(s)	344
SacI	GAGCTC	1 cut(s)	1055
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	7 cut(s)	229, 313, 455, 511, 557, 803, 1139
Sau96I	GGNCC	3 cut(s)	60, 840, 954
SchI	GAGTC	4 cut(s)	656, 680, 728, 1111
ScrFI	CCNGG	8 cut(s)	123, 387, 667, 838, 844, 886, 943, 961
SduI	GDGCHC	1 cut(s)	1055
SfaNI	GCATC	3 cut(s)	200, 715, 837
SfcI	CTRYAG	3 cut(s)	487, 544, 574
Sfr274I	CTCGAG	1 cut(s)	176
SgrDI	CGTCGACG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	60, 954
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	176, 1090
SmoI	CTYRAG	2 cut(s)	176, 1090
Sse9I	AATT	3 cut(s)	130, 411, 1056
SseBI	AGGCCT	2 cut(s)	889, 946
SsiI	CCGC	2 cut(s)	295, 364
SstI	GAGCTC	1 cut(s)	1055
StuI	AGGCCT	2 cut(s)	889, 946
StyD4I	CCNGG	8 cut(s)	121, 385, 665, 836, 842, 884, 941, 959
StyI	CCWWGG	4 cut(s)	233, 788, 890, 947
TaaI	ACNGT	3 cut(s)	51, 56, 346
TaqI	TCGA	6 cut(s)	68, 80, 86, 177, 424, 514
TaqII	GACCGA	1 cut(s)	588
TasI	AATT	3 cut(s)	130, 411, 1056
TatI	WGTACW	1 cut(s)	322
TfiI	GAWTC	3 cut(s)	118, 245, 1070
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	3 cut(s)	351, 633, 880
TseFI	GTSAC	3 cut(s)	139, 495, 621
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	3 cut(s)	139, 495, 621
TspDTI	ATGAA	3 cut(s)	206, 495, 1158
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	3 cut(s)	351, 633, 880
VpaK11BI	GGWCC	2 cut(s)	60, 954
XhoI	CTCGAG	1 cut(s)	176
XmaJI	CCTAGG	2 cut(s)	890, 947
XmiI	GTMKAC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.