Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009271

Physical Location & Seq

Genomic Coordinates Forward (+)

2706868 .. 2709988

Gene Structure 3121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGCAGTAGCTACACATTGTTTCACTTCACCTTGTCATGACCGTATTCGATTTTTCTCAAGTGATGATGGTATTGGTAGGCTTGGCATTACAAGAAAGAGGATCAATGGCACTTTCTTGCTCAAGATTTTACCTCCAATCCAAAGTGCTGATCTCAGAACAACTGGTGGGAGATCCTCACGTCCTTTATCTGCATTCAGGTCAGGATTCTCTAAGGGGATATTTGACATTGTGCCATTACCATCAAAGAATGAGCTGAAAGAGCTGACCGCTCCGCTGTTGCTAAAACTCGTGGGTGTTTTAGCTTGCGCGTTCCTTATTGTTCCATCTGCAGATGCAGTTGATGCACTTAAAACTTGTGCATGCTTATTGAAGGGATGCAGGATAGAACTCGCAAAGTGCATTGCCAACCCTGCCTGTGCAGCCAATGTCGCGTGCCTTCAGACCTGCAATAACCGTCCAGATGAAACCGAGTGCCAGATTAAATGTGGGGATCTGTTTGAGAACAGTGTTGTTGATGAGTTCAACGAGTGTGCTGTGTCGAGAAAAAAGTGTGTTCCTAGAAAATCTGATCTCGGAGAATTTCCTGCCCCAGACCCTTCTGTTCTTGTACAGAACTTCAACATCTCGGACTTTAACGGGAAGTGGTACATTACAAGTGGCTTGAATCCAACCTTTGATGCCTTCGACTGCCAGCTGCATGAGTTCCACACAGAAGGTGACAACAAGCTTGTTGGAAACATCTCTTGGAGAATAAAGACCCTAGACAGTGGATTCTTTACTAGGTCAGCCGTACAAAAATTCGTGCAAGATCCTAACCAACCTGGTGTTCTCTACAATCATGACAACGAGTACCTTCACTATCAAGATGACTGGTATATCCTGTCATCAAAGATAGAGAATAAACCTGAAGACTATATATTTGTATACTACCGTGGGCGAAACGATGCTTGGGATGGATATGGTGGTGCAGTTGTATACACGAGAAGTTCTGTATTACCCAATAGCATTATACCAGAACTCGAAAAAGCAGCAAAAAGCATAGGCAGAGACTTCAGCACATTCATTAGAACGGATAACACATGTGGTCCTGAACCTGCGCTCGTGGAGAGAATTGAGAAGACAGTGGAAGAAGGTGAAAGGATAATCGTAAAAGAGGTTGAAGAGATAGAAGAAGAGGTAGAGAAGGAAGTGGAGAAGGTCGGTAGGACTGAGATGACCTTGTTCCAGAGATTGGCTGAAGGATTTAATGAACTGAAGCAAGACGAGGAGAATTTCGTGAGAGAGTTAAGTAAAGAAGAGATGGAGTTTTTGGATGAGATCAAAATGGAAGCAAGTGAGGTTGAAAAATTGTTTGGGAAAGCTTTGCCAATCAGGAAGGTCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0010028 GO:0015994 GO:0016108 GO:0016116 GO:0016122 GO:0016491 GO:0019752 GO:0019904 GO:0031976 GO:0031977 GO:0031984 GO:0032787 GO:0033013 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046422 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

VDE

Protein Analysis

462

Amino Acids

52.02

Weight (kDa)

5.18

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VDE	PF07137	120 - 360	4.2e-108	VDE lipocalin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08550 AT1G08550 AT1G08550
fragaria_vesca	FvH4_6g01130 FvH4_6g01130
malus_domestica	MD12G1255200.v1.1
prunus_persica	Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1
pyrus_communis	pycom12g23390
rosa_chinensis	RchiOBHm_Chr3g0448661
rosa_laevigata	RLG00000025881
rosa_multiflora	Rmu_sc0003116.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426930
rosa_rugosa	Rorug02G0615100
rosa_samantha	Rh3AG013900 Rh3BG013700 Rh3CG012800 Rh3DG014500
rosa_wichuraiana	Rw3G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	455, 1105
AccB7I	CCANNNNNTGG	1 cut(s)	1234
AccBSI	CCGCTC	1 cut(s)	272
AccI	GTMKAC	2 cut(s)	927, 978
AccII	CGCG	2 cut(s)	311, 434
AciI	CCGC	2 cut(s)	270, 275
AclWI	GGATC	4 cut(s)	110, 168, 501, 806
AcsI	RAATTY	3 cut(s)	581, 800, 1273
AcuI	CTGAAG	5 cut(s)	425, 930, 1039, 1260, 1277
AfaI	GTAC	4 cut(s)	612, 650, 795, 854
AfiI	CCNNNNNNNGG	1 cut(s)	1234
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	6 cut(s)	373, 526, 622, 667, 1163, 1346
AjiI	CACGTC	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	823
AjuI	GAANNNNNNNTTGG	8 cut(s)	730, 762, 813, 845, 934, 966, 1338, 1370
AluBI	AGCT	7 cut(s)	11, 256, 265, 305, 697, 730, 1364
AluI	AGCT	7 cut(s)	11, 256, 265, 305, 697, 730, 1364
Alw26I	GTCTC	1 cut(s)	1044
AlwI	GGATC	4 cut(s)	110, 168, 501, 806
ApeKI	GCWGC	3 cut(s)	422, 697, 1031
ApoI	RAATTY	3 cut(s)	581, 800, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	905, 937
AspLEI	GCGC	2 cut(s)	311, 1102
AspS9I	GGNCC	1 cut(s)	1088
AsuHPI	GGTGA	3 cut(s)	21, 731, 1148
AvaII	GGWCC	1 cut(s)	1088
BauI	CACGAG	3 cut(s)	290, 982, 1103
BbsI	GAAGAC	2 cut(s)	918, 1127
BbvI	GCAGC	3 cut(s)	434, 684, 1043
BccI	CCATC	5 cut(s)	62, 250, 334, 950, 1297
BceAI	ACGGC	1 cut(s)	776
BciT130I	CCWGG	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	1044
BfaI	CTAG	3 cut(s)	561, 764, 783
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	2 cut(s)	455, 1105
BisI	GCNGC	3 cut(s)	423, 698, 1032
BlsI	GCNGC	3 cut(s)	424, 699, 1033
Bme1390I	CCNGG	1 cut(s)	825
Bme18I	GGWCC	1 cut(s)	1088
BmgBI	CACGTC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	1088
BmrFI	CCNGG	1 cut(s)	825
BmsI	GCATC	5 cut(s)	325, 334, 368, 670, 937
BpiI	GAAGAC	2 cut(s)	918, 1127
BpuEI	CTTGAG	2 cut(s)	43, 107
BsaJI	CCNNGG	1 cut(s)	934
Bsc4I	CCNNNNNNNGG	1 cut(s)	1234
Bse1I	ACTGG	2 cut(s)	169, 878
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	1 cut(s)	934
BseGI	GGATG	3 cut(s)	383, 961, 1321
BseLI	CCNNNNNNNGG	1 cut(s)	1234
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	169, 1203
BseNI	ACTGG	2 cut(s)	169, 878
BseRI	GAGGAG	1 cut(s)	1283
BseXI	GCAGC	3 cut(s)	434, 684, 1043
BsgI	GTGCAG	2 cut(s)	441, 990
Bsh1236I	CGCG	2 cut(s)	311, 434
BslI	CCNNNNNNNGG	1 cut(s)	1234
BsmAI	GTCTC	1 cut(s)	1044
BsmI	GAATGC	1 cut(s)	194
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
BspACI	CCGC	2 cut(s)	270, 275
BspCNI	CTCAG	2 cut(s)	168, 1204
BspFNI	CGCG	2 cut(s)	311, 434
BspHI	TCATGA	2 cut(s)	37, 841
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	2 cut(s)	455, 1105
BspPI	GGATC	4 cut(s)	110, 168, 501, 806
BsrBI	CCGCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	2 cut(s)	169, 878
BssECI	CCNNGG	1 cut(s)	934
BssMI	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
BssNAI	GTATAC	2 cut(s)	928, 979
BssSI	CACGAG	3 cut(s)	290, 982, 1103
Bst1107I	GTATAC	2 cut(s)	928, 979
Bst2BI	CACGAG	3 cut(s)	290, 982, 1103
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	6 cut(s)	44, 458, 509, 770, 935, 1126
Bst6I	CTCTTC	3 cut(s)	1158, 1170, 1293
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	610
BstC8I	GCNNGC	4 cut(s)	307, 364, 436, 695
BstDEI	CTNAG	3 cut(s)	155, 213, 1212
BstDSI	CCRYGG	1 cut(s)	934
BstF5I	GGATG	3 cut(s)	383, 961, 1321
BstFNI	CGCG	2 cut(s)	311, 434
BstHHI	GCGC	2 cut(s)	311, 1102
BstKTI	GATC	7 cut(s)	105, 154, 176, 496, 574, 814, 1323
BstMAI	GTCTC	1 cut(s)	1044
BstMBI	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
BstMWI	GCNNNNNNNGC	5 cut(s)	262, 344, 413, 422, 431
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	2 cut(s)	366, 1086
BstSCI	CCNGG	1 cut(s)	823
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	2 cut(s)	311, 434
BstV1I	GCAGC	3 cut(s)	434, 684, 1043
BstV2I	GAAGAC	2 cut(s)	918, 1127
BstX2I	RGATCY	3 cut(s)	173, 493, 811
BstYI	RGATCY	3 cut(s)	173, 493, 811
BstZ17I	GTATAC	2 cut(s)	928, 979
BtgI	CCRYGG	1 cut(s)	934
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	3 cut(s)	383, 961, 1321
BtsIMutI	CAGTG	3 cut(s)	514, 775, 1131
BveI	ACCTGC	2 cut(s)	455, 1105
Cac8I	GCNNGC	4 cut(s)	307, 364, 436, 695
CciI	TCATGA	2 cut(s)	37, 841
CfoI	GCGC	2 cut(s)	311, 1102
Cfr13I	GGNCC	1 cut(s)	1088
CsiI	ACCWGGT	1 cut(s)	823
Csp6I	GTAC	4 cut(s)	611, 649, 794, 853
CviAII	CATG	5 cut(s)	38, 363, 701, 842, 1083
CviQI	GTAC	4 cut(s)	611, 649, 794, 853
DdeI	CTNAG	3 cut(s)	155, 213, 1212
DpnI	GATC	7 cut(s)	104, 153, 175, 495, 573, 813, 1322
DpnII	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
Eam1104I	CTCTTC	3 cut(s)	1158, 1170, 1293
EarI	CTCTTC	3 cut(s)	1158, 1170, 1293
Eco47I	GGWCC	1 cut(s)	1088
Eco57I	CTGAAG	5 cut(s)	425, 930, 1039, 1260, 1277
EcoRII	CCWGG	1 cut(s)	823
FaeI	CATG	5 cut(s)	41, 366, 704, 845, 1086
FatI	CATG	5 cut(s)	37, 362, 700, 841, 1082
FblI	GTMKAC	2 cut(s)	927, 978
Fnu4HI	GCNGC	3 cut(s)	423, 698, 1032
FokI	GGATG	3 cut(s)	390, 968, 1328
Fsp4HI	GCNGC	3 cut(s)	423, 698, 1032
FspBI	CTAG	3 cut(s)	561, 764, 783
GlaI	GCGC	2 cut(s)	310, 1101
GluI	GCNGC	3 cut(s)	423, 698, 1032
HhaI	GCGC	2 cut(s)	311, 1102
Hin1II	CATG	5 cut(s)	41, 366, 704, 845, 1086
Hin6I	GCGC	2 cut(s)	309, 1100
HinP1I	GCGC	2 cut(s)	309, 1100
HindIII	AAGCTT	2 cut(s)	728, 1362
HinfI	GANTC	3 cut(s)	207, 667, 774
HphI	GGTGA	3 cut(s)	21, 731, 1148
Hpy166II	GTNNAC	2 cut(s)	928, 979
Hpy188I	TCNGA	5 cut(s)	158, 444, 571, 578, 631
Hpy8I	GTNNAC	2 cut(s)	928, 979
HpyCH4III	ACNGT	6 cut(s)	44, 458, 509, 770, 935, 1126
HpyCH4IV	ACGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	262, 344, 413, 422, 431
HpyF3I	CTNAG	3 cut(s)	155, 213, 1212
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	41, 366, 704, 845, 1086
HspAI	GCGC	2 cut(s)	309, 1100
Kzo9I	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	3 cut(s)	434, 684, 1043
LweI	GCATC	5 cut(s)	325, 334, 368, 670, 937
MabI	ACCWGGT	1 cut(s)	823
MaeI	CTAG	3 cut(s)	561, 764, 783
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	7 cut(s)	104, 153, 175, 495, 573, 813, 1322
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
MboII	GAAGA	7 cut(s)	923, 1132, 1142, 1175, 1184, 1187, 1310
MflI	RGATCY	3 cut(s)	173, 493, 811
MluCI	AATT	5 cut(s)	581, 800, 1113, 1273, 1349
MmeI	TCCRAC	2 cut(s)	695, 715
MnlI	CCTC	7 cut(s)	93, 144, 187, 1150, 1171, 1261, 1333
MseI	TTAA	5 cut(s)	351, 483, 636, 1248, 1289
MspA1I	CMGCKG	2 cut(s)	277, 697
MspR9I	CCNGG	1 cut(s)	825
Mva1269I	GAATGC	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	2 cut(s)	311, 434
MwoI	GCNNNNNNNGC	5 cut(s)	262, 344, 413, 422, 431
NdeII	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
NlaIII	CATG	5 cut(s)	41, 366, 704, 845, 1086
NmuCI	GTSAC	1 cut(s)	719
NspI	RCATGY	2 cut(s)	366, 1086
PaeI	GCATGC	1 cut(s)	366
PagI	TCATGA	2 cut(s)	37, 841
PciI	ACATGT	1 cut(s)	1082
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	3 cut(s)	207, 667, 774
PflMI	CCANNNNNTGG	1 cut(s)	1234
PkrI	GCNGC	3 cut(s)	424, 699, 1033
PscI	ACATGT	1 cut(s)	1082
Psp6I	CCWGG	1 cut(s)	823
PspGI	CCWGG	1 cut(s)	823
PspPI	GGNCC	1 cut(s)	1088
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	3 cut(s)	173, 493, 811
PvuII	CAGCTG	1 cut(s)	697
RsaI	GTAC	4 cut(s)	612, 650, 795, 854
RsaNI	GTAC	4 cut(s)	611, 649, 794, 853
SaqAI	TTAA	5 cut(s)	351, 483, 636, 1248, 1289
SatI	GCNGC	3 cut(s)	423, 698, 1032
Sau3AI	GATC	7 cut(s)	102, 151, 173, 493, 571, 811, 1320
Sau96I	GGNCC	1 cut(s)	1088
ScrFI	CCNGG	1 cut(s)	825
SexAI	ACCWGGT	1 cut(s)	823
SfaNI	GCATC	5 cut(s)	325, 334, 368, 670, 937
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	1088
SmlI	CTYRAG	2 cut(s)	58, 122
SmoI	CTYRAG	2 cut(s)	58, 122
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	5 cut(s)	581, 800, 1113, 1273, 1349
SsiI	CCGC	2 cut(s)	270, 275
SspMI	CTAG	3 cut(s)	561, 764, 783
StyD4I	CCNGG	1 cut(s)	823
TaaI	ACNGT	6 cut(s)	44, 458, 509, 770, 935, 1126
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	4 cut(s)	49, 542, 687, 1023
TasI	AATT	5 cut(s)	581, 800, 1113, 1273, 1349
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	3 cut(s)	207, 667, 774
Tru1I	TTAA	5 cut(s)	351, 483, 636, 1248, 1289
Tru9I	TTAA	5 cut(s)	351, 483, 636, 1248, 1289
TscAI	CASTG	3 cut(s)	514, 775, 1131
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	3 cut(s)	422, 697, 1031
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	3 cut(s)	480, 1054, 1266
TspGWI	ACGGA	1 cut(s)	1088
TspRI	CASTG	3 cut(s)	514, 775, 1131
Van91I	CCANNNNNTGG	1 cut(s)	1234
VpaK11BI	GGWCC	1 cut(s)	1088
XapI	RAATTY	3 cut(s)	581, 800, 1273
XceI	RCATGY	2 cut(s)	366, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmiI	GTMKAC	2 cut(s)	927, 978
XspI	CTAG	3 cut(s)	561, 764, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.