FvH4_6g01130
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
615691 .. 619431
3741 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01130.t1

Sequence Viewer

Length: 1470 bp
ATGGCACTGGCCGCGCGTTCAATCTCCCTGTTCCATAATGATAGTATTGGCAGTACATGTATGAGGTTGGGATTTACAAGTGAAGAAAGGTTTCAGAAGAGAAGGGTGGTTGATTTTCAAGTGGTTGTGAAATTTTGTCCCAATAGCAGAAAATCAAGATACTCCCAATTCATTAGTTCTGATAGAAACTCTTCTGGTTTGGGGTCGAAATGGTCTTCTATGCTCTCTAGGAGGACTGAGAAGGCCTTTTCAAAAAGGGGAACAAGAAGTAGTGAAATTGAGACGAAACAGGTGATTAATGTTATACTTGAAGAAATATCAAGTCTCGTTAGAGAGTGGAGTCAGTTACACTTCTTGAAAGTAGCCGGTTTACTGGTATGCGCTCTCATGGTGATACCTTCAGCCAATGCTGTTGATGCTCTCAAAACTTGTTCCTGCTTACTTAAGGAATGCAGGGTAGAACTTGCAAAGTGCATTGCAAACCCGTCCTGTGCTGCCAATGTAGCTTGTCTGCAAACTTGTAATAATCGTCCTGATGAGACAGAATGCCAGATTAAATGCGGAGACCTGTTTGAGAACAGTGTCGTGGATGAATTTAATGAATGTGCGGTGTCACGAAAGAAGTGTGTACCTATGAAATCCGACGTGGGAGAATTTCCTATCCCAGATCCTTCTGCTCTTGTTCAAAGCTTTGATATGGAAAAGTTTAATGGGAAATGGTTCATCACTAGTGGCTTGAATCCTACCTTTGATGCTTTTGATTGCCAAGTGCATGACTTCCATACAGAATCTGGCAGACTTATAGGAAATTTATCTTGGAGAATAAGAACCCCTGATGGTGGATTTTTCACCCGAACAGCTGTTCAGAAGTTTGTGCAAGATCCAAACCAGCCTGGCATACTATACAATCATGACAATGATTATCTTCACTATCAAGATGACTGGTACATTCTATCTTCGAAGATAGAGAATAAACCGGATGACTATATATTTGTATACTACCGTGGCAAGAATGATGCGTGGGACGGATACGGTGGTTCTGTGATATATACAAGGAATTCAGTTTTGCCACAAAGCATTGTTCCTGAACTTGAAAAAGCAGCTGCGAACGTGGGACGAGACTTCAGCAAGTTCATCAAAACTGATAATACTTGCGGGCCTGAACCTCCACTTGTAGAGAGGTTGGAGAAGAAACTTGAGGAAGGGGAGAGGACCATTATAGAGGAGGTTGAACAGATAGAAGGGGAGGTGCAGAAGGCTGAACAGACTGAGCTGTCATTGTTTCAAAGGTTAGCAGAAGGGTTTAATGAGAGGTTAGCAAAAGGGTTTAATGAGATTAAACAAGATGAGGAGAACTTCTTGAGAGAGCTTTCCAAAGAAGAGATGGATATATTGAGCGAGCTCAAAATGGAAGCAACCGAAGTAGGAAAGCTTTTCGGACGAACACTTCCTCTTCGGAAGCTAAGGTAG

Protein Analysis

490

Amino Acids

55.57

Weight (kDa)

5.59

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VDE PF07137 144 - 383 4.6e-108 VDE lipocalin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1273
AccI GTMKAC 1 cut(s) 996
AccII CGCG 2 cut(s) 14, 16
AciI CCGC 4 cut(s) 12, 561, 608, 1155
AclWI GGATC 2 cut(s) 662, 875
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 5 cut(s) 131, 593, 653, 808, 1057
AcuI CTGAAG 2 cut(s) 384, 1108
AfaI GTAC 3 cut(s) 55, 630, 947
AfiI CCNNNNNNNGG 1 cut(s) 839
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 56
AhlI ACTAGT 1 cut(s) 728
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 892
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
AluBI AGCT 9 cut(s) 506, 690, 860, 1103, 1273, 1369, 1402, 1432, 1462
AluI AGCT 9 cut(s) 506, 690, 860, 1103, 1273, 1369, 1402, 1432, 1462
Alw21I GWGCWC 1 cut(s) 1404
Alw26I GTCTC 5 cut(s) 275, 329, 533, 558, 1113
AlwI GGATC 2 cut(s) 662, 875
AlwNI CAGNNNCTG 1 cut(s) 791
AoxI GGCC 3 cut(s) 9, 243, 1157
ApeKI GCWGC 3 cut(s) 494, 1100, 1103
ApoI RAATTY 5 cut(s) 131, 593, 653, 808, 1057
ArsI GACNNNNNNTTYG 2 cut(s) 974, 1006
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 3 cut(s) 90, 190, 719
AspLEI GCGC 2 cut(s) 16, 383
AspS9I GGNCC 2 cut(s) 1157, 1212
AsuHPI GGTGA 3 cut(s) 304, 403, 841
AsuII TTCGAA 1 cut(s) 959
AvaII GGWCC 1 cut(s) 1212
BaeI ACNNNNGTAYC 2 cut(s) 1021, 1054
BanII GRGCYC 1 cut(s) 1404
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 1404
BbvI GCAGC 3 cut(s) 481, 1090, 1112
BccI CCATC 2 cut(s) 830, 1378
BciT130I CCWGG 1 cut(s) 894
BciVI GTATCC 1 cut(s) 1022
BcoDI GTCTC 5 cut(s) 275, 329, 533, 558, 1113
BcuI ACTAGT 1 cut(s) 728
BfaI CTAG 2 cut(s) 228, 729
BfrI CTTAAG 1 cut(s) 443
BfuI GTATCC 1 cut(s) 1022
BisI GCNGC 4 cut(s) 12, 495, 1101, 1104
BlsI GCNGC 4 cut(s) 13, 496, 1102, 1105
Bme1390I CCNGG 1 cut(s) 894
Bme18I GGWCC 1 cut(s) 1212
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 1157, 1212
BmrFI CCNGG 1 cut(s) 894
BmsI GCATC 3 cut(s) 406, 742, 1006
BpiI GAAGAC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 1463
Bpu14I TTCGAA 1 cut(s) 959
BpuEI CTTGAG 2 cut(s) 1217, 1381
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 1003
BsaWI WCCGGW 1 cut(s) 976
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 3 cut(s) 12, 378, 947
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 894
BseDI CCNNGG 1 cut(s) 1003
BseGI GGATG 2 cut(s) 595, 985
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 228, 1260
BseNI ACTGG 3 cut(s) 12, 378, 947
BseRI GAGGAG 2 cut(s) 1238, 1364
BseXI GCAGC 3 cut(s) 481, 1090, 1112
BsgI GTGCAG 1 cut(s) 1271
Bsh1236I CGCG 2 cut(s) 14, 16
BshFI GGCC 3 cut(s) 11, 245, 1159
BsiHKAI GWGCWC 1 cut(s) 1404
BsiSI CCGG 2 cut(s) 366, 977
BslFI GGGAC 3 cut(s) 123, 1037, 1128
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 5 cut(s) 275, 329, 533, 558, 1113
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 3 cut(s) 123, 1037, 1128
BsmI GAATGC 2 cut(s) 455, 551
BsnI GGCC 3 cut(s) 11, 245, 1159
Bso31I GGTCTC 1 cut(s) 558
Bsp119I TTCGAA 1 cut(s) 959
Bsp1286I GDGCHC 1 cut(s) 1404
Bsp143I GATC 2 cut(s) 667, 880
BspACI CCGC 4 cut(s) 12, 561, 608, 1155
BspANI GGCC 3 cut(s) 11, 245, 1159
BspCNI CTCAG 2 cut(s) 229, 1261
BspFNI CGCG 2 cut(s) 14, 16
BspHI TCATGA 1 cut(s) 910
BspPI GGATC 2 cut(s) 662, 875
BspT104I TTCGAA 1 cut(s) 959
BspTI CTTAAG 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 558
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 3 cut(s) 12, 378, 947
BssAI RCCGGY 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 1003
BssMI GATC 2 cut(s) 667, 880
BssNAI GTATAC 1 cut(s) 997
Bst1107I GTATAC 1 cut(s) 997
Bst2UI CCWGG 1 cut(s) 894
Bst4CI ACNGT 3 cut(s) 581, 1004, 1034
Bst6I CTCTTC 4 cut(s) 92, 196, 1374, 1458
BstAFI CTTAAG 1 cut(s) 443
BstBI TTCGAA 1 cut(s) 959
BstC8I GCNNGC 2 cut(s) 1157, 1400
BstDEI CTNAG 3 cut(s) 237, 1269, 1463
BstDSI CCRYGG 1 cut(s) 1003
BstF5I GGATG 2 cut(s) 595, 985
BstFNI CGCG 2 cut(s) 14, 16
BstHHI GCGC 2 cut(s) 16, 383
BstKTI GATC 2 cut(s) 670, 883
BstMAI GTCTC 5 cut(s) 275, 329, 533, 558, 1113
BstMBI GATC 2 cut(s) 667, 880
BstMWI GCNNNNNNNGC 3 cut(s) 11, 416, 503
BstNI CCWGG 1 cut(s) 894
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 892
BstUI CGCG 2 cut(s) 14, 16
BstV1I GCAGC 3 cut(s) 481, 1090, 1112
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 667, 880
BstYI RGATCY 2 cut(s) 667, 880
BstZ17I GTATAC 1 cut(s) 997
BsuI GTATCC 1 cut(s) 1022
BsuRI GGCC 3 cut(s) 11, 245, 1159
BtgI CCRYGG 1 cut(s) 1003
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 2 cut(s) 595, 985
BtsIMutI CAGTG 2 cut(s) 5, 586
Cac8I GCNNGC 2 cut(s) 1157, 1400
CaiI CAGNNNCTG 1 cut(s) 791
CciI TCATGA 1 cut(s) 910
CfoI GCGC 2 cut(s) 16, 383
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 2 cut(s) 1157, 1212
Csp6I GTAC 3 cut(s) 54, 629, 946
CviAII CATG 4 cut(s) 57, 388, 773, 911
CviQI GTAC 3 cut(s) 54, 629, 946
DdeI CTNAG 3 cut(s) 237, 1269, 1463
DpnI GATC 2 cut(s) 669, 882
DpnII GATC 2 cut(s) 667, 880
DrdI GACNNNNNNGTC 1 cut(s) 1273
DseDI GACNNNNNNGTC 1 cut(s) 1273
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 4 cut(s) 92, 196, 1374, 1458
EarI CTCTTC 4 cut(s) 92, 196, 1374, 1458
Ecl136II GAGCTC 1 cut(s) 1402
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 1404
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 1212
Eco53kI GAGCTC 1 cut(s) 1402
Eco57I CTGAAG 2 cut(s) 384, 1108
EcoICRI GAGCTC 1 cut(s) 1402
EcoRI GAATTC 1 cut(s) 1057
EcoRII CCWGG 1 cut(s) 892
EcoT38I GRGCYC 1 cut(s) 1404
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 4 cut(s) 60, 391, 776, 914
FaqI GGGAC 3 cut(s) 123, 1037, 1128
FatI CATG 4 cut(s) 56, 387, 772, 910
FauI CCCGC 1 cut(s) 1148
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 4 cut(s) 12, 495, 1101, 1104
FokI GGATG 2 cut(s) 602, 992
FriOI GRGCYC 1 cut(s) 1404
Fsp4HI GCNGC 4 cut(s) 12, 495, 1101, 1104
FspBI CTAG 2 cut(s) 228, 729
GlaI GCGC 2 cut(s) 15, 382
GluI GCNGC 4 cut(s) 12, 495, 1101, 1104
HaeIII GGCC 3 cut(s) 11, 245, 1159
HapII CCGG 2 cut(s) 366, 977
HhaI GCGC 2 cut(s) 16, 383
Hin1II CATG 4 cut(s) 60, 391, 776, 914
Hin6I GCGC 2 cut(s) 14, 381
HinP1I GCGC 2 cut(s) 14, 381
HindIII AAGCTT 2 cut(s) 688, 1430
HinfI GANTC 3 cut(s) 340, 739, 788
HpaII CCGG 2 cut(s) 366, 977
HphI GGTGA 3 cut(s) 304, 403, 841
Hpy166II GTNNAC 3 cut(s) 371, 629, 997
Hpy188I TCNGA 6 cut(s) 96, 181, 643, 867, 1439, 1458
Hpy188III TCNNGA 8 cut(s) 156, 355, 533, 615, 911, 935, 1085, 1360
Hpy8I GTNNAC 3 cut(s) 371, 629, 997
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 8 cut(s) 96, 235, 408, 681, 1196, 1235, 1249, 1292
HpyCH4III ACNGT 3 cut(s) 581, 1004, 1034
HpyCH4IV ACGT 2 cut(s) 645, 1110
HpyCH4V TGCA 8 cut(s) 453, 467, 474, 479, 514, 772, 877, 1252
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 416, 503
HpyF3I CTNAG 3 cut(s) 237, 1269, 1463
HpySE526I ACGT 2 cut(s) 645, 1110
Hsp92II CATG 4 cut(s) 60, 391, 776, 914
HspAI GCGC 2 cut(s) 14, 381
Kzo9I GATC 2 cut(s) 667, 880
Lsp1109I GCAGC 3 cut(s) 481, 1090, 1112
LweI GCATC 3 cut(s) 406, 742, 1006
MaeI CTAG 2 cut(s) 228, 729
MaeII ACGT 2 cut(s) 645, 1110
MaeIII GTNAC 2 cut(s) 345, 612
MalI GATC 2 cut(s) 669, 882
MboI GATC 2 cut(s) 667, 880
MflI RGATCY 2 cut(s) 667, 880
MhlI GDGCHC 1 cut(s) 1404
MluCI AATT 7 cut(s) 131, 167, 276, 593, 653, 808, 1057
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 666, 1164
MroXI GAANNNNTTC 3 cut(s) 90, 190, 719
MseI TTAA 8 cut(s) 297, 444, 555, 597, 708, 1305, 1329, 1338
MslI CAYNNNNRTG 1 cut(s) 915
MspA1I CMGCKG 2 cut(s) 860, 1103
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 2 cut(s) 366, 977
MspR9I CCNGG 1 cut(s) 894
Mva1269I GAATGC 2 cut(s) 455, 551
MvaI CCWGG 1 cut(s) 894
MvnI CGCG 2 cut(s) 14, 16
MwoI GCNNNNNNNGC 3 cut(s) 11, 416, 503
NdeII GATC 2 cut(s) 667, 880
NlaIII CATG 4 cut(s) 60, 391, 776, 914
NmuCI GTSAC 1 cut(s) 612
NspI RCATGY 1 cut(s) 60
NspV TTCGAA 1 cut(s) 959
PagI TCATGA 1 cut(s) 910
PceI AGGCCT 1 cut(s) 245
PciI ACATGT 1 cut(s) 56
PctI GAATGC 2 cut(s) 455, 551
PdmI GAANNNNTTC 3 cut(s) 90, 190, 719
PfeI GAWTC 2 cut(s) 739, 788
PkrI GCNGC 4 cut(s) 13, 496, 1102, 1105
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PscI ACATGT 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 1404
Psp6I CCWGG 1 cut(s) 892
PspGI CCWGG 1 cut(s) 892
PspPI GGNCC 2 cut(s) 1157, 1212
PstNI CAGNNNCTG 1 cut(s) 791
PsuI RGATCY 2 cut(s) 667, 880
PvuII CAGCTG 2 cut(s) 860, 1103
RsaI GTAC 3 cut(s) 55, 630, 947
RsaNI GTAC 3 cut(s) 54, 629, 946
RseI CAYNNNNRTG 1 cut(s) 915
SacI GAGCTC 1 cut(s) 1404
SaqAI TTAA 8 cut(s) 297, 444, 555, 597, 708, 1305, 1329, 1338
SatI GCNGC 4 cut(s) 12, 495, 1101, 1104
Sau3AI GATC 2 cut(s) 667, 880
Sau96I GGNCC 2 cut(s) 1157, 1212
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 894
SduI GDGCHC 1 cut(s) 1404
SfaNI GCATC 3 cut(s) 406, 742, 1006
SfuI TTCGAA 1 cut(s) 959
SinI GGWCC 1 cut(s) 1212
SmiMI CAYNNNNRTG 1 cut(s) 915
SmlI CTYRAG 3 cut(s) 443, 1196, 1360
SmoI CTYRAG 3 cut(s) 443, 1196, 1360
SpeI ACTAGT 1 cut(s) 728
Sse9I AATT 7 cut(s) 131, 167, 276, 593, 653, 808, 1057
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 4 cut(s) 12, 561, 608, 1155
SspMI CTAG 2 cut(s) 228, 729
SstI GAGCTC 1 cut(s) 1404
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 892
TaaI ACNGT 3 cut(s) 581, 1004, 1034
TaiI ACGT 2 cut(s) 648, 1113
TaqI TCGA 2 cut(s) 206, 959
TasI AATT 7 cut(s) 131, 167, 276, 593, 653, 808, 1057
TatI WGTACW 1 cut(s) 53
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 2 cut(s) 739, 788
Tru1I TTAA 8 cut(s) 297, 444, 555, 597, 708, 1305, 1329, 1338
Tru9I TTAA 8 cut(s) 297, 444, 555, 597, 708, 1305, 1329, 1338
TscAI CASTG 2 cut(s) 12, 586
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 3 cut(s) 494, 1100, 1103
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 6 cut(s) 160, 606, 615, 650, 712, 1123
TspGWI ACGGA 1 cut(s) 1041
TspRI CASTG 2 cut(s) 12, 586
Vha464I CTTAAG 1 cut(s) 443
VpaK11BI GGWCC 1 cut(s) 1212
VspI ATTAAT 1 cut(s) 297
XapI RAATTY 5 cut(s) 131, 593, 653, 808, 1057
XceI RCATGY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 2 cut(s) 788, 1381
XmiI GTMKAC 1 cut(s) 996
XmnI GAANNNNTTC 3 cut(s) 90, 190, 719
XspI CTAG 2 cut(s) 228, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.