Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009271

Physical Location & Seq

Genomic Coordinates Forward (+)

30223578 .. 30227384

Gene Structure 3807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G356100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGCACTGGCTGGACGTTCAATTTTCCTGTCCCATAATGATAGTATTGGCAATACATGTATCAGGTTGGGACTTACAAGTGACGAAAGGTTTCAGAAGAGGATGGTTGGTTTTCATGTGGTTGTGAAATTTCCCTCCAATAGAAGAAAATCAAGATACTCCCAATTCATTAGGTCTAAAAGAAACTTTTGTGTTTTGGGGTCAAAATGCTCTTCACTGCTCTCTAGCAAGACAGAGGAGGCTTTCTCAAAATGTAGCACGAGAACTAGTGAACCTGAGATGAAACGAGTAATCAATTTTCTGCTTGAAGAAGCATCAAGTTGCATTAAAGAGTGGAGGCGGTTACATTTCATGAAAGTAGCTGGTTTGCTGGCATGCACTTTCATGATCATGCCATCAGCCAATGCCACCGATGCTCTCAAAACTTGTGCCTGCTTACTTAAGGAATGCAGGGTAGAACTTGCCAAGTGTATTGGAAACCCGTCGTGTGCTGCCAATATTGCTTGTCTGCAAACTTGCAATAATCGACCTGATGAGACTGAATGCCAGATTAAATGTGGGGACCTGTTTGAAAACAGTGTCGTAGATGAATTTAATGAATGCGCAGTGTCGCGAAAGAAGTGTGTACCTAAGAAATCTGATGTGGGAGAATTTCCCATCCCAGATCCGGCTGTTCTTGTTAAAAGCTTTGATATTGAAAAATTTAATGGAAAGTGGTTCATTACAAGTGGCTTGAATCCTACCTTTGATGCATTTGATTGCCAGTTGCATGAATTCCATACAGAATCTAGCAAACTTGTGGGGAATTTGTCTTGGAGAATACGAACCCCGGATGGTGGCTTTTTCACTAGATCAGCTGTGCAGAAATTCGTGCAAGACCCAAATCAGCCTGGAATACTTTACAATCATGACAATGACTATCTTCACTATCAAGATGACTGGTATATTCTATCGTCCAAGATGGAGAATAAACCGGATGACTACATATTTGTGTACTACCGTGGAAGGAATGATGCATGGGATGGCTACGGCGGTGCTGTGATATACACAAGGAGTTCAGTTTTGCCAGCAAGCATTGTTCCTGACCTTGAAAAAGCAGCTGCAAGTGTGGGAAGGGACTTTAGCAAGTTTATCAGAACAGATAATACTTGTGGCCCTGAGCCTCCTCTTGTAGAGAGGTTGGAGAAGACACTTGAAGAAGGGGAAAAGAACATTATAGAGGAAGTTAAACAGTTAGAAGGGGAAGTTGAGAAGGTTGAACAGACTGAGTTGACATTGTTGCAAAAGTTAGCTGAAGGGTTTAACGAGCTTAAACAAGATGAGGAGAATTTCTTGAGAGGGCTTAGCAAAGAAGAGATGGATATATTGAGCGAGCTAAAAATGGAAGCAGGTGAAGTAGAAAAGCTTTTTGGACAAACACTTCCACTTAGGAAGCTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006720 GO:0006721 GO:0006725 GO:0006778 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0010028 GO:0015994 GO:0016108 GO:0016116 GO:0016122 GO:0016491 GO:0019752 GO:0019904 GO:0031976 GO:0031977 GO:0031984 GO:0032787 GO:0033013 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046422 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

VDE

Protein Analysis

481

Amino Acids

54.46

Weight (kDa)

5.97

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08550 AT1G08550 AT1G08550
fragaria_vesca	FvH4_6g01130 FvH4_6g01130
malus_domestica	MD12G1255200.v1.1
prunus_persica	Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1 Prupe.6G356100_v2.0.a1
pyrus_communis	pycom12g23390
rosa_chinensis	RchiOBHm_Chr3g0448661
rosa_laevigata	RLG00000025881
rosa_multiflora	Rmu_sc0003116.1_g000034
rosa_roxburghii	Rroxscaffold_6G00426930
rosa_rugosa	Rorug02G0615100
rosa_samantha	Rh3AG013900 Rh3BG013700 Rh3CG012800 Rh3DG014500
rosa_wichuraiana	Rw3G001030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1379
Acc16I	TGCGCA	1 cut(s)	604
Acc36I	ACCTGC	1 cut(s)	1379
AccII	CGCG	1 cut(s)	613
AciI	CCGC	2 cut(s)	340, 1032
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	8 cut(s)	128, 590, 650, 701, 773, 805, 866, 1327
AcuI	CTGAAG	1 cut(s)	1314
AfaI	GTAC	2 cut(s)	627, 995
AfiI	CCNNNNNNNGG	2 cut(s)	667, 836
AflII	CTTAAG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	8 cut(s)	21, 308, 572, 698, 736, 1091, 1196, 1259
AhlI	ACTAGT	1 cut(s)	266
AjnI	CCWGG	1 cut(s)	889
AjuI	GAANNNNNNNTTGG	2 cut(s)	1392, 1424
AluBI	AGCT	9 cut(s)	362, 687, 857, 1100, 1292, 1309, 1375, 1405, 1435
AluI	AGCT	9 cut(s)	362, 687, 857, 1100, 1292, 1309, 1375, 1405, 1435
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	1 cut(s)	1153
ApeKI	GCWGC	3 cut(s)	491, 1097, 1100
ApoI	RAATTY	8 cut(s)	128, 590, 650, 701, 773, 805, 866, 1327
ArsI	GACNNNNNNTTYG	2 cut(s)	971, 1003
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	562, 1154
AsuC2I	CCSGG	1 cut(s)	830
AsuHPI	GGTGA	1 cut(s)	1403
AvaII	GGWCC	1 cut(s)	562
BauI	CACGAG	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	1193
BbvI	GCAGC	3 cut(s)	478, 1087, 1109
BccI	CCATC	7 cut(s)	97, 403, 665, 827, 955, 1016, 1351
BceAI	ACGGC	1 cut(s)	1045
BciT130I	CCWGG	1 cut(s)	891
BclI	TGATCA	1 cut(s)	387
BcnI	CCSGG	1 cut(s)	830
BcoDI	GTCTC	1 cut(s)	530
BcuI	ACTAGT	1 cut(s)	266
BfaI	CTAG	4 cut(s)	225, 267, 789, 849
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	1379
BisI	GCNGC	3 cut(s)	492, 1098, 1101
BlpI	GCTNAGC	1 cut(s)	1343
BlsI	GCNGC	3 cut(s)	493, 1099, 1102
Bme1390I	CCNGG	2 cut(s)	830, 891
Bme18I	GGWCC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	562, 1154
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	2 cut(s)	830, 891
BmsI	GCATC	4 cut(s)	323, 403, 739, 1003
BpiI	GAAGAC	1 cut(s)	1193
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu10I	CCTNAGC	1 cut(s)	1158
Bpu1102I	GCTNAGC	1 cut(s)	1343
BpuEI	CTTGAG	1 cut(s)	1354
BpuMI	CCSGG	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	828, 1000
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 836
Bse1I	ACTGG	3 cut(s)	12, 763, 944
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	2 cut(s)	828, 1000
BseGI	GGATG	5 cut(s)	108, 657, 838, 982, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	667, 836
BseMII	CTCAG	3 cut(s)	267, 1149, 1257
BseNI	ACTGG	3 cut(s)	12, 763, 944
BseRI	GAGGAG	3 cut(s)	251, 1155, 1337
BseXI	GCAGC	3 cut(s)	478, 1087, 1109
BsgI	GTGCAG	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	1 cut(s)	1155
BsiSI	CCGG	3 cut(s)	668, 830, 974
BslFI	GGGAC	4 cut(s)	16, 84, 575, 1130
BslI	CCNNNNNNNGG	2 cut(s)	667, 836
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	4 cut(s)	16, 84, 575, 1130
BsmI	GAATGC	3 cut(s)	452, 548, 605
BsnI	GGCC	1 cut(s)	1155
Bsp143I	GATC	3 cut(s)	387, 664, 851
Bsp1720I	GCTNAGC	1 cut(s)	1343
Bsp68I	TCGCGA	1 cut(s)	613
BspACI	CCGC	2 cut(s)	340, 1032
BspANI	GGCC	1 cut(s)	1155
BspCNI	CTCAG	3 cut(s)	268, 1150, 1258
BspFNI	CGCG	1 cut(s)	613
BspHI	TCATGA	3 cut(s)	351, 384, 907
BspLI	GGNNCC	1 cut(s)	563
BspMI	ACCTGC	1 cut(s)	1379
BspPI	GGATC	1 cut(s)	659
BspQI	GCTCTTC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	440
BsrI	ACTGG	3 cut(s)	12, 763, 944
BssECI	CCNNGG	2 cut(s)	828, 1000
BssMI	GATC	3 cut(s)	387, 664, 851
BssSI	CACGAG	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	3 cut(s)	578, 1001, 1233
Bst6I	CTCTTC	3 cut(s)	92, 217, 1347
BstAFI	CTTAAG	1 cut(s)	440
BstC8I	GCNNGC	6 cut(s)	372, 376, 433, 1068, 1072, 1373
BstDEI	CTNAG	7 cut(s)	276, 630, 1158, 1266, 1343, 1427, 1436
BstDSI	CCRYGG	1 cut(s)	1000
BstF5I	GGATG	5 cut(s)	108, 657, 838, 982, 1027
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	3 cut(s)	390, 667, 854
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	387, 664, 851
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 500
BstNI	CCWGG	1 cut(s)	891
BstNSI	RCATGY	2 cut(s)	60, 378
BstSCI	CCNGG	2 cut(s)	828, 889
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	478, 1087, 1109
BstV2I	GAAGAC	1 cut(s)	1193
BstX2I	RGATCY	1 cut(s)	664
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	1155
BtgI	CCRYGG	1 cut(s)	1000
BtsCI	GGATG	5 cut(s)	108, 657, 838, 982, 1027
BtsI	GCAGTG	2 cut(s)	215, 612
BtsIMutI	CAGTG	4 cut(s)	5, 215, 583, 612
BtuMI	TCGCGA	1 cut(s)	613
BveI	ACCTGC	1 cut(s)	1379
Cac8I	GCNNGC	6 cut(s)	372, 376, 433, 1068, 1072, 1373
CciI	TCATGA	3 cut(s)	351, 384, 907
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	562, 1154
Csp6I	GTAC	2 cut(s)	626, 994
CviAII	CATG	9 cut(s)	57, 116, 352, 375, 385, 391, 770, 908, 1017
CviQI	GTAC	2 cut(s)	626, 994
DdeI	CTNAG	7 cut(s)	276, 630, 1158, 1266, 1343, 1427, 1436
DpnI	GATC	3 cut(s)	389, 666, 853
DpnII	GATC	3 cut(s)	387, 664, 851
Eam1104I	CTCTTC	3 cut(s)	92, 217, 1347
EarI	CTCTTC	3 cut(s)	92, 217, 1347
Eco47I	GGWCC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	1314
EcoO109I	RGGNCCY	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	889
EcoT22I	ATGCAT	2 cut(s)	754, 1018
FaeI	CATG	9 cut(s)	60, 119, 355, 378, 388, 394, 773, 911, 1020
FaqI	GGGAC	4 cut(s)	16, 84, 575, 1130
FatI	CATG	9 cut(s)	56, 115, 351, 374, 384, 390, 769, 907, 1016
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	492, 1098, 1101
FokI	GGATG	5 cut(s)	115, 644, 845, 989, 1034
Fsp4HI	GCNGC	3 cut(s)	492, 1098, 1101
FspBI	CTAG	4 cut(s)	225, 267, 789, 849
FspI	TGCGCA	1 cut(s)	604
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	3 cut(s)	492, 1098, 1101
HaeIII	GGCC	1 cut(s)	1155
HapII	CCGG	3 cut(s)	668, 830, 974
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	9 cut(s)	60, 119, 355, 378, 388, 394, 773, 911, 1020
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	1 cut(s)	1272
HindII	GTYRAC	1 cut(s)	1272
HindIII	AAGCTT	2 cut(s)	685, 1403
HinfI	GANTC	2 cut(s)	736, 785
HpaII	CCGG	3 cut(s)	668, 830, 974
HphI	GGTGA	1 cut(s)	1403
Hpy166II	GTNNAC	4 cut(s)	272, 626, 994, 1272
Hpy188I	TCNGA	3 cut(s)	96, 640, 1136
Hpy188III	TCNNGA	8 cut(s)	153, 352, 385, 612, 908, 932, 1082, 1333
Hpy8I	GTNNAC	4 cut(s)	272, 626, 994, 1272
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	6 cut(s)	999, 1107, 1193, 1232, 1246, 1289
HpyCH4III	ACNGT	3 cut(s)	578, 1001, 1233
HpyCH4IV	ACGT	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 500
HpyF3I	CTNAG	7 cut(s)	276, 630, 1158, 1266, 1343, 1427, 1436
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	9 cut(s)	60, 119, 355, 378, 388, 394, 773, 911, 1020
HspAI	GCGC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	3 cut(s)	387, 664, 851
LguI	GCTCTTC	1 cut(s)	217
Lsp1109I	GCAGC	3 cut(s)	478, 1087, 1109
LweI	GCATC	4 cut(s)	323, 403, 739, 1003
MaeI	CTAG	4 cut(s)	225, 267, 789, 849
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	80, 342
MalI	GATC	3 cut(s)	389, 666, 853
MboI	GATC	3 cut(s)	387, 664, 851
MboII	GAAGA	8 cut(s)	109, 156, 204, 320, 914, 1198, 1208, 1364
MflI	RGATCY	1 cut(s)	664
MmeI	TCCRAC	1 cut(s)	1161
Mph1103I	ATGCAT	2 cut(s)	754, 1018
MroXI	GAANNNNTTC	1 cut(s)	90
MseI	TTAA	9 cut(s)	327, 441, 552, 594, 681, 705, 1227, 1302, 1311
MslI	CAYNNNNRTG	4 cut(s)	383, 389, 912, 989
MspA1I	CMGCKG	2 cut(s)	857, 1100
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	3 cut(s)	668, 830, 974
MspR9I	CCNGG	2 cut(s)	830, 891
Mva1269I	GAATGC	3 cut(s)	452, 548, 605
MvaI	CCWGG	1 cut(s)	891
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	2 cut(s)	413, 500
NciI	CCSGG	1 cut(s)	830
NdeII	GATC	3 cut(s)	387, 664, 851
NlaIII	CATG	9 cut(s)	60, 119, 355, 378, 388, 394, 773, 911, 1020
NlaIV	GGNNCC	1 cut(s)	563
NmuCI	GTSAC	1 cut(s)	80
NruI	TCGCGA	1 cut(s)	613
NsbI	TGCGCA	1 cut(s)	604
NsiI	ATGCAT	2 cut(s)	754, 1018
NspI	RCATGY	2 cut(s)	60, 378
PaeI	GCATGC	1 cut(s)	378
PagI	TCATGA	3 cut(s)	351, 384, 907
PaqCI	CACCTGC	1 cut(s)	1379
PciI	ACATGT	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	217
PctI	GAATGC	3 cut(s)	452, 548, 605
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	736, 785
PkrI	GCNGC	3 cut(s)	493, 1099, 1102
PpuMI	RGGWCCY	1 cut(s)	562
PscI	ACATGT	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	889
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	2 cut(s)	562, 1154
PspPPI	RGGWCCY	1 cut(s)	562
PsrI	GAACNNNNNNTAC	2 cut(s)	1129, 1161
PsuI	RGATCY	1 cut(s)	664
PvuII	CAGCTG	2 cut(s)	857, 1100
RruI	TCGCGA	1 cut(s)	613
RsaI	GTAC	2 cut(s)	627, 995
RsaNI	GTAC	2 cut(s)	626, 994
RseI	CAYNNNNRTG	4 cut(s)	383, 389, 912, 989
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	9 cut(s)	327, 441, 552, 594, 681, 705, 1227, 1302, 1311
SatI	GCNGC	3 cut(s)	492, 1098, 1101
Sau3AI	GATC	3 cut(s)	387, 664, 851
Sau96I	GGNCC	2 cut(s)	562, 1154
ScrFI	CCNGG	2 cut(s)	830, 891
SfaNI	GCATC	4 cut(s)	323, 403, 739, 1003
SinI	GGWCC	1 cut(s)	562
SmiMI	CAYNNNNRTG	4 cut(s)	383, 389, 912, 989
SmlI	CTYRAG	2 cut(s)	440, 1333
SmoI	CTYRAG	2 cut(s)	440, 1333
SpeI	ACTAGT	1 cut(s)	266
SphI	GCATGC	1 cut(s)	378
SsiI	CCGC	2 cut(s)	340, 1032
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	4 cut(s)	225, 267, 789, 849
StyD4I	CCNGG	2 cut(s)	828, 889
TaaI	ACNGT	3 cut(s)	578, 1001, 1233
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	526
TatI	WGTACW	1 cut(s)	993
TfiI	GAWTC	2 cut(s)	736, 785
Tru1I	TTAA	9 cut(s)	327, 441, 552, 594, 681, 705, 1227, 1302, 1311
Tru9I	TTAA	9 cut(s)	327, 441, 552, 594, 681, 705, 1227, 1302, 1311
TscAI	CASTG	4 cut(s)	12, 222, 583, 612
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	3 cut(s)	491, 1097, 1100
Tsp45I	GTSAC	1 cut(s)	80
TspRI	CASTG	4 cut(s)	12, 222, 583, 612
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	8 cut(s)	128, 590, 650, 701, 773, 805, 866, 1327
XceI	RCATGY	2 cut(s)	60, 378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	4 cut(s)	225, 267, 789, 849
Zsp2I	ATGCAT	2 cut(s)	754, 1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.