MD12G1255200.v1.1
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
32334157 .. 32337446
3290 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1255200.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGGCGTTGGCTGGACGTTCGGTCTTCCTGTCCCATAAAGATGGTATAGGAAATGCTTGTATTAGGTTGGGACTTAAAAATGATGAAAGGCTTCAGAAGGGAAGGATGGTTGGTTTTCATGTGGTTGTGAAATTTTCCTCCCAGAGAAGAAACTTTTCTGGCTTGGGGTCAAAGCGTTCTTCGCTGCTCTCTAGCAGGATGGAGGAGGCTTTCTCAGAACGAAGCACGAAAACTAGTGAACCCGAGATGGGACGCGCGATTGATTTGATGATTGAAGAAGTATTGAGTGTTATTAAAGAGTGGAGCCAGTTACATTTCATGAAAGTAGCTGGTTTACTGTTATGCACTTTCATGGTCATGCCATCAGCCAATGCTGTCGATGCTCTCAAAACTTGTGCCTGCTTACTTAAGGAATGCAGGGTAGAACTTGCGAAGTGCATTGGAAACCCGTCATGTGCTGCCAATATTGCTTGTTTGCAAACTTGCAATAATCGACCAGATGAGACTGAATGCCAGATTAAATGTGGTGACCTGTTTGAAAACAAAGTCGTAGATGAATTTAATGAATGTGCAGTGTCACGAAAGAAGTGCGTACCTATGAAATCTGATGTGGGAGAATTTCCTATCCCAGATCCTGCTGCTCTTGTTAAAAGCTTTGATATGTCGAAGTTCAACGGAAAGTGGTTCATTACAAGTGGCTTGAATCCTACCTTCGATGTATTTGATTGCCAATTGCATGAATTCCATACAGAATCCAGCAAACTTGTAGGGAACTTGTCCTGGAGAATAAAAACCCCAGATGGTGGCTTTTTCACTCGATCAGCTGAGCAGAAATTCGTGCAAGACCCAAACCAGCCCGGCATTCTATACAATCACGACAATGAATATCTTCACTATCAAGATGACTGGTATATTCTATCGTCTAAGATAGAAAACACACCGGATGACTACATTTTTGTGTACTACCGTGGAAGAAATGACGCATGGGATGGATATGGTGGTGCTGTTGTATACACAAGGAGTTCAGTTTTGCCAGAAAGTATTGTTCCCGAACTTGAAAGAGCAGCTAAAAGTGTGGGAAGGGACTTCAGCAAGTTTATCCGAACAGACAATACTTGTGGACCTGAGCCTCCGCTCGTAGAGAGGTTGGAAAAGACAATTGAAGAAGGGGAAAGGACCATTATAGAGGAAGTTAAACAGATAGAAGGGGAAGTTGAAAAGGTCGAACAGACTGAGTTGACATTGTTTCAAAAGTTACTAGAAGGGTTTAACGTGCTTAAACAAGACGAGGAGAACTTCTTGAGAGGTCTTTCGAAAGAAGAGATGGATCTGCTGAGCGAGCTAAAAATGGAAGCTGGTGAAGTAGGAAAACTGTTTGGAAAAACTCTTCCGCTGAGGAAGCTAAGATAG

Protein Analysis

470

Amino Acids

53.01

Weight (kDa)

5.49

Isoelectric Point (pI)

49.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VDE PF07137 132 - 371 3.9e-110 VDE lipocalin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 803
AccBSI CCGCTC 1 cut(s) 1135
AccI GTMKAC 1 cut(s) 1011
AccII CGCG 2 cut(s) 255, 257
AciI CCGC 2 cut(s) 1133, 1391
AclWI GGATC 2 cut(s) 626, 1335
AcsI RAATTY 5 cut(s) 131, 557, 617, 740, 833
AcuI CTGAAG 2 cut(s) 77, 1072
AfaI GTAC 2 cut(s) 594, 962
AfiI CCNNNNNNNGG 2 cut(s) 248, 803
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 8 cut(s) 275, 539, 673, 703, 1058, 1163, 1217, 1250
AhdI GACNNNNNGTC 1 cut(s) 20
AhlI ACTAGT 1 cut(s) 233
AjnI CCWGG 1 cut(s) 779
AluBI AGCT 7 cut(s) 329, 654, 824, 1067, 1342, 1355, 1402
AluI AGCT 7 cut(s) 329, 654, 824, 1067, 1342, 1355, 1402
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 2 cut(s) 626, 1335
AlwNI CAGNNNCTG 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 242
ApeKI GCWGC 4 cut(s) 184, 458, 638, 1064
ApoI RAATTY 5 cut(s) 131, 557, 617, 740, 833
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
Asp700I GAANNNNTTC 3 cut(s) 90, 154, 888
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 1121, 1176
AsuC2I CCSGG 1 cut(s) 858
AsuHPI GGTGA 2 cut(s) 539, 1370
AsuII TTCGAA 1 cut(s) 1313
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 2 cut(s) 1121, 1176
BbsI GAAGAC 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 1394
BbvI GCAGC 4 cut(s) 171, 445, 625, 1076
BccI CCATC 8 cut(s) 35, 100, 193, 241, 370, 794, 983, 1318
BcgI CGANNNNNNTGC 2 cut(s) 570, 604
BciT130I CCWGG 1 cut(s) 781
BcnI CCSGG 1 cut(s) 858
BcoDI GTCTC 1 cut(s) 497
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 3 cut(s) 192, 234, 1259
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 4 cut(s) 185, 459, 639, 1065
BlpI GCTNAGC 2 cut(s) 825, 1334
BlsI GCNGC 4 cut(s) 186, 460, 640, 1066
Bme1390I CCNGG 2 cut(s) 781, 858
Bme18I GGWCC 2 cut(s) 1121, 1176
BmeRI GACNNNNNGTC 1 cut(s) 20
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 1121, 1176
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 2 cut(s) 781, 858
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 1 cut(s) 802
Bpu10I CCTNAGC 2 cut(s) 1125, 1394
Bpu1102I GCTNAGC 2 cut(s) 825, 1334
Bpu14I TTCGAA 1 cut(s) 1313
BpuEI CTTGAG 1 cut(s) 1321
BpuMI CCSGG 1 cut(s) 858
BsaJI CCNNGG 1 cut(s) 967
BsaWI WCCGGW 1 cut(s) 940
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 803
Bse1I ACTGG 2 cut(s) 307, 911
BseBI CCWGG 1 cut(s) 781
BseDI CCNNGG 1 cut(s) 967
BseGI GGATG 4 cut(s) 111, 204, 949, 994
BseLI CCNNNNNNNGG 2 cut(s) 248, 803
BseMII CTCAG 6 cut(s) 228, 816, 1116, 1224, 1325, 1385
BseNI ACTGG 2 cut(s) 307, 911
BseRI GAGGAG 2 cut(s) 218, 1304
BseXI GCAGC 4 cut(s) 171, 445, 625, 1076
BsgI GTGCAG 1 cut(s) 591
Bsh1236I CGCG 2 cut(s) 255, 257
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 858, 941
BslFI GGGAC 4 cut(s) 16, 84, 264, 1097
BslI CCNNNNNNNGG 2 cut(s) 248, 803
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 4 cut(s) 16, 84, 264, 1097
BsmI GAATGC 3 cut(s) 419, 515, 861
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 1313
Bsp143I GATC 3 cut(s) 631, 818, 1327
Bsp1720I GCTNAGC 2 cut(s) 825, 1334
BspACI CCGC 2 cut(s) 1133, 1391
BspCNI CTCAG 6 cut(s) 227, 817, 1117, 1225, 1326, 1386
BspFNI CGCG 2 cut(s) 255, 257
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 305
BspPI GGATC 2 cut(s) 626, 1335
BspT104I TTCGAA 1 cut(s) 1313
BspTI CTTAAG 1 cut(s) 407
BsrBI CCGCTC 1 cut(s) 1135
BsrI ACTGG 2 cut(s) 307, 911
BssECI CCNNGG 1 cut(s) 967
BssMI GATC 3 cut(s) 631, 818, 1327
BssNAI GTATAC 1 cut(s) 1012
Bst1107I GTATAC 1 cut(s) 1012
Bst2UI CCWGG 1 cut(s) 781
Bst4CI ACNGT 3 cut(s) 339, 968, 1374
Bst6I CTCTTC 2 cut(s) 1314, 1392
BstAFI CTTAAG 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 1313
BstC8I GCNNGC 2 cut(s) 400, 1340
BstDEI CTNAG 8 cut(s) 214, 825, 924, 1125, 1233, 1334, 1394, 1403
BstDSI CCRYGG 1 cut(s) 967
BstEII GGTNACC 1 cut(s) 527
BstF5I GGATG 4 cut(s) 111, 204, 949, 994
BstFNI CGCG 2 cut(s) 255, 257
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 634, 821, 1330
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 3 cut(s) 631, 818, 1327
BstMWI GCNNNNNNNGC 5 cut(s) 181, 380, 467, 1339, 1399
BstNI CCWGG 1 cut(s) 781
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 2 cut(s) 779, 856
BstUI CGCG 2 cut(s) 255, 257
BstV1I GCAGC 4 cut(s) 171, 445, 625, 1076
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 631, 1327
BstXI CCANNNNNNTGG 1 cut(s) 41
BstYI RGATCY 2 cut(s) 631, 1327
BstZ17I GTATAC 1 cut(s) 1012
BtgI CCRYGG 1 cut(s) 967
BtsCI GGATG 4 cut(s) 111, 204, 949, 994
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 400, 1340
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 1121, 1176
CseI GACGC 2 cut(s) 261, 989
Csp6I GTAC 2 cut(s) 593, 961
CspCI CAANNNNNGTGG 2 cut(s) 1099, 1134
CviAII CATG 7 cut(s) 119, 319, 352, 358, 453, 737, 984
CviQI GTAC 2 cut(s) 593, 961
DdeI CTNAG 8 cut(s) 214, 825, 924, 1125, 1233, 1334, 1394, 1403
DpnI GATC 3 cut(s) 633, 820, 1329
DpnII GATC 3 cut(s) 631, 818, 1327
DriI GACNNNNNGTC 1 cut(s) 20
Eam1104I CTCTTC 2 cut(s) 1314, 1392
Eam1105I GACNNNNNGTC 1 cut(s) 20
EarI CTCTTC 2 cut(s) 1314, 1392
Eco47I GGWCC 2 cut(s) 1121, 1176
Eco57I CTGAAG 2 cut(s) 77, 1072
Eco88I CYCGRG 1 cut(s) 242
Eco91I GGTNACC 1 cut(s) 527
EcoO65I GGTNACC 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 779
FaeI CATG 7 cut(s) 122, 322, 355, 361, 456, 740, 987
FaqI GGGAC 4 cut(s) 16, 84, 264, 1097
FatI CATG 7 cut(s) 118, 318, 351, 357, 452, 736, 983
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 4 cut(s) 185, 459, 639, 1065
FokI GGATG 4 cut(s) 118, 211, 956, 1001
Fsp4HI GCNGC 4 cut(s) 185, 459, 639, 1065
FspBI CTAG 3 cut(s) 192, 234, 1259
GlaI GCGC 1 cut(s) 256
GluI GCNGC 4 cut(s) 185, 459, 639, 1065
GsuI CTGGAG 1 cut(s) 802
HapII CCGG 2 cut(s) 858, 941
HgaI GACGC 2 cut(s) 261, 989
HhaI GCGC 1 cut(s) 257
Hin1II CATG 7 cut(s) 122, 322, 355, 361, 456, 740, 987
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 1239
HindII GTYRAC 1 cut(s) 1239
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 2 cut(s) 703, 752
HpaII CCGG 2 cut(s) 858, 941
HphI GGTGA 2 cut(s) 539, 1370
Hpy166II GTNNAC 6 cut(s) 239, 335, 961, 1012, 1121, 1239
Hpy188I TCNGA 4 cut(s) 96, 217, 607, 1103
Hpy188III TCNNGA 6 cut(s) 319, 579, 875, 899, 1049, 1300
Hpy8I GTNNAC 6 cut(s) 239, 335, 961, 1012, 1121, 1239
HpyAV CCTTC 7 cut(s) 91, 96, 721, 1074, 1160, 1199, 1256
HpyCH4III ACNGT 3 cut(s) 339, 968, 1374
HpyCH4IV ACGT 2 cut(s) 16, 1272
HpyCH4V TGCA 8 cut(s) 345, 417, 438, 478, 486, 572, 736, 841
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 380, 467, 1339, 1399
HpyF3I CTNAG 8 cut(s) 214, 825, 924, 1125, 1233, 1334, 1394, 1403
HpySE526I ACGT 2 cut(s) 16, 1272
Hsp92II CATG 7 cut(s) 122, 322, 355, 361, 456, 740, 987
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 3 cut(s) 631, 818, 1327
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 4 cut(s) 171, 445, 625, 1076
LweI GCATC 1 cut(s) 370
MaeI CTAG 3 cut(s) 192, 234, 1259
MaeII ACGT 2 cut(s) 16, 1272
MaeIII GTNAC 4 cut(s) 309, 527, 576, 1254
MalI GATC 3 cut(s) 633, 820, 1329
MbiI CCGCTC 1 cut(s) 1135
MboI GATC 3 cut(s) 631, 818, 1327
MboII GAAGA 9 cut(s) 16, 159, 171, 287, 881, 984, 1175, 1331, 1379
MfeI CAATTG 2 cut(s) 731, 1158
MflI RGATCY 2 cut(s) 631, 1327
MluCI AATT 7 cut(s) 131, 557, 617, 731, 740, 833, 1158
MmeI TCCRAC 1 cut(s) 1128
MnlI CCTC 9 cut(s) 148, 196, 199, 1137, 1140, 1180, 1282, 1298, 1389
MroXI GAANNNNTTC 3 cut(s) 90, 154, 888
MseI TTAA 9 cut(s) 75, 294, 408, 519, 561, 648, 1194, 1269, 1278
MslI CAYNNNNRTG 5 cut(s) 39, 350, 356, 879, 956
MspA1I CMGCKG 2 cut(s) 824, 1393
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 2 cut(s) 858, 941
MspR9I CCNGG 2 cut(s) 781, 858
MunI CAATTG 2 cut(s) 731, 1158
Mva1269I GAATGC 3 cut(s) 419, 515, 861
MvaI CCWGG 1 cut(s) 781
MvnI CGCG 2 cut(s) 255, 257
MwoI GCNNNNNNNGC 5 cut(s) 181, 380, 467, 1339, 1399
NciI CCSGG 1 cut(s) 858
NdeII GATC 3 cut(s) 631, 818, 1327
NlaIII CATG 7 cut(s) 122, 322, 355, 361, 456, 740, 987
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 527, 576
NspV TTCGAA 1 cut(s) 1313
PagI TCATGA 1 cut(s) 318
PctI GAATGC 3 cut(s) 419, 515, 861
PdmI GAANNNNTTC 3 cut(s) 90, 154, 888
PfeI GAWTC 2 cut(s) 703, 752
PflMI CCANNNNNTGG 1 cut(s) 803
PfoI TCCNGGA 1 cut(s) 779
PkrI GCNGC 4 cut(s) 186, 460, 640, 1066
Psp6I CCWGG 1 cut(s) 779
PspEI GGTNACC 1 cut(s) 527
PspGI CCWGG 1 cut(s) 779
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 2 cut(s) 1121, 1176
PsrI GAACNNNNNNTAC 2 cut(s) 1096, 1128
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 631, 1327
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 2 cut(s) 594, 962
RsaNI GTAC 2 cut(s) 593, 961
RseI CAYNNNNRTG 5 cut(s) 39, 350, 356, 879, 956
SaqAI TTAA 9 cut(s) 75, 294, 408, 519, 561, 648, 1194, 1269, 1278
SatI GCNGC 4 cut(s) 185, 459, 639, 1065
Sau3AI GATC 3 cut(s) 631, 818, 1327
Sau96I GGNCC 2 cut(s) 1121, 1176
ScrFI CCNGG 2 cut(s) 781, 858
SfaNI GCATC 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 1313
SinI GGWCC 2 cut(s) 1121, 1176
SmiMI CAYNNNNRTG 5 cut(s) 39, 350, 356, 879, 956
SmlI CTYRAG 2 cut(s) 407, 1300
SmoI CTYRAG 2 cut(s) 407, 1300
SpeI ACTAGT 1 cut(s) 233
Sse9I AATT 7 cut(s) 131, 557, 617, 731, 740, 833, 1158
SsiI CCGC 2 cut(s) 1133, 1391
SspI AATATT 1 cut(s) 466
SspMI CTAG 3 cut(s) 192, 234, 1259
StyD4I CCNGG 2 cut(s) 779, 856
TaaI ACNGT 3 cut(s) 339, 968, 1374
TaiI ACGT 2 cut(s) 19, 1275
TaqI TCGA 7 cut(s) 378, 493, 665, 714, 817, 1224, 1313
TaqII GACCGA 1 cut(s) 10
TasI AATT 7 cut(s) 131, 557, 617, 731, 740, 833, 1158
TatI WGTACW 1 cut(s) 960
TfiI GAWTC 2 cut(s) 703, 752
Tru1I TTAA 9 cut(s) 75, 294, 408, 519, 561, 648, 1194, 1269, 1278
Tru9I TTAA 9 cut(s) 75, 294, 408, 519, 561, 648, 1194, 1269, 1278
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 2 cut(s) 527, 576
TseI GCWGC 4 cut(s) 184, 458, 638, 1064
Tsp45I GTSAC 2 cut(s) 527, 576
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 1 cut(s) 579
Van91I CCANNNNNTGG 1 cut(s) 803
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 1121, 1176
XapI RAATTY 5 cut(s) 131, 557, 617, 740, 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XmiI GTMKAC 1 cut(s) 1011
XmnI GAANNNNTTC 3 cut(s) 90, 154, 888
XspI CTAG 3 cut(s) 192, 234, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.