Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015219

Physical Location & Seq

Genomic Coordinates Reverse (-)

3012739 .. 3015255

Gene Structure 2517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGACCCTAATAATCAGATACAGGCACCAGTTGAAAATTATGCAAACCCAAGGACATGTCTTTTCCATGTTCTCTTCAAGGGTGCTGCGTTGGCGTTTTACATTCTCTCTGCTCTCTTCTTCAACAGCTTTGTCATCATCTTTGTAGTCACTGTTCTTCTTGCTGCTCTTGACTTCTGGGTGGTTAAGAATGTCAGTGGGCGTATACTGGTTGGTCTCAGGTGGTGGAACGAGATCAATGACTTGGGAGAAAGTGTCTGGAAATTCGAGTCTCTTGATCAGGAGTCTTTGGCTCGGATGAACAAGAAAGACTCATGGCTTTTCTGGTGGACACTTTACCTTGCAGCAGCTGCATGGTTTATCCTTGGGGTATTTTCTCTGATTAGATTTCAAGCTGACTATCTGCTTGTTGTTGGCGTTTGCTTGTCCCTCAATGTGGCTAATATCATCGGCTTCACAAAGTGCAAGAAAGATGCAAAGAAACAATTTCAGCAGTTTGCTTCGCAGACAATCGCATCACGGTTCCAATCAACAGTACAATCTGCCTTCACCCTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009306 GO:0009653 GO:0009826 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016192 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032502 GO:0032588 GO:0032940 GO:0032989 GO:0033036 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF846

Protein Analysis

186

Amino Acids

21.24

Weight (kDa)

9.05

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF846	PF05832	16 - 118	4.7e-36	Eukaryotic protein of unknown function (DUF846)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09330
fragaria_vesca	FvH4_5g30460
malus_domestica	MD01G1039100.v1.1 MD15G1312600.v1.1
prunus_persica	Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1
pyrus_communis	pycom15g27620
rosa_chinensis	RchiOBHm_Chr7g0224911
rosa_laevigata	RLG00000001846
rosa_multiflora	Rmu_sc0000307.1_g000011
rosa_roxburghii	Rroxscaffold_3G00234290
rosa_rugosa	Rorug07G0226900
rosa_samantha	Rh7BG362300 Rh7DG372400
rosa_wichuraiana	Rw7G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccI	GTMKAC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	263
AdeI	CACNNNGTG	1 cut(s)	462
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	35, 79, 124, 392
AluBI	AGCT	3 cut(s)	129, 350, 395
AluI	AGCT	3 cut(s)	129, 350, 395
Alw26I	GTCTC	2 cut(s)	221, 276
AlwNI	CAGNNNCTG	1 cut(s)	350
ApeKI	GCWGC	5 cut(s)	86, 164, 344, 347, 350
ApoI	RAATTY	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	5 cut(s)	73, 151, 337, 356, 359
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	221, 276
BisI	GCNGC	5 cut(s)	87, 165, 345, 348, 351
BlsI	GCNGC	5 cut(s)	88, 166, 346, 349, 352
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 27, 524
BmsI	GCATC	2 cut(s)	463, 524
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	50, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	29, 213
BseDI	CCNNGG	2 cut(s)	50, 364
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	2 cut(s)	29, 213
BseXI	GCAGC	5 cut(s)	73, 151, 337, 356, 359
BshNI	GGYRCC	1 cut(s)	25
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	221, 276
BsmFI	GGGAC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	234, 277
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	6, 27, 524
BspT107I	GGYRCC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	29, 213
BssECI	CCNNGG	2 cut(s)	50, 364
BssMI	GATC	2 cut(s)	234, 277
BssNAI	GTATAC	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	50, 364
Bst1107I	GTATAC	1 cut(s)	206
Bst4CI	ACNGT	3 cut(s)	154, 522, 535
Bst6I	CTCTTC	2 cut(s)	80, 122
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	237, 280
BstMAI	GTCTC	2 cut(s)	221, 276
BstMBI	GATC	2 cut(s)	234, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 350
BstNSI	RCATGY	1 cut(s)	60
BstV1I	GCAGC	5 cut(s)	73, 151, 337, 356, 359
BstZ17I	GTATAC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	150, 202
CaiI	CAGNNNCTG	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	4 cut(s)	57, 68, 315, 354
CviJI	RGCY	7 cut(s)	129, 293, 319, 350, 395, 440, 453
CviKI_1	RGCY	7 cut(s)	129, 293, 319, 350, 395, 440, 453
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	2 cut(s)	236, 279
DpnII	GATC	2 cut(s)	234, 277
DraIII	CACNNNGTG	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	80, 122
EarI	CTCTTC	2 cut(s)	80, 122
Eco130I	CCWWGG	2 cut(s)	50, 364
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	50, 364
ErhI	CCWWGG	2 cut(s)	50, 364
FaeI	CATG	4 cut(s)	60, 71, 318, 357
FaiI	YATR	6 cut(s)	42, 58, 69, 206, 316, 355
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	4 cut(s)	56, 67, 314, 353
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	87, 165, 345, 348, 351
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	5 cut(s)	87, 165, 345, 348, 351
GluI	GCNGC	5 cut(s)	87, 165, 345, 348, 351
Hin1II	CATG	4 cut(s)	60, 71, 318, 357
HinfI	GANTC	3 cut(s)	269, 284, 311
HphI	GGTGA	1 cut(s)	541
Hpy166II	GTNNAC	2 cut(s)	206, 330
Hpy188I	TCNGA	4 cut(s)	18, 297, 381, 560
Hpy188III	TCNNGA	4 cut(s)	170, 259, 275, 281
Hpy8I	GTNNAC	2 cut(s)	206, 330
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	3 cut(s)	154, 522, 535
HpyCH4V	TGCA	5 cut(s)	44, 344, 353, 465, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 350
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	60, 71, 318, 357
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	234, 277
LpnPI	CCDG	8 cut(s)	8, 42, 163, 194, 205, 244, 266, 310
Lsp1109I	GCAGC	5 cut(s)	73, 151, 337, 356, 359
LweI	GCATC	2 cut(s)	463, 524
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	236, 279
MboI	GATC	2 cut(s)	234, 277
MboII	GAAGA	4 cut(s)	67, 109, 112, 149
MluCI	AATT	3 cut(s)	37, 263, 485
MlyI	GAGTC	3 cut(s)	278, 293, 305
MnlI	CCTC	1 cut(s)	440
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	92, 350
NdeII	GATC	2 cut(s)	234, 277
NlaIII	CATG	4 cut(s)	60, 71, 318, 357
NlaIV	GGNNCC	3 cut(s)	6, 27, 524
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	60
PciI	ACATGT	1 cut(s)	56
PkrI	GCNGC	5 cut(s)	88, 166, 346, 349, 352
PleI	GAGTC	3 cut(s)	277, 292, 305
PpsI	GAGTC	3 cut(s)	277, 292, 305
PscI	ACATGT	1 cut(s)	56
PspN4I	GGNNCC	3 cut(s)	6, 27, 524
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	138, 170
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	5 cut(s)	87, 165, 345, 348, 351
Sau3AI	GATC	2 cut(s)	234, 277
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	278, 293, 305
SetI	ASST	5 cut(s)	131, 224, 342, 352, 397
SfaNI	GCATC	2 cut(s)	463, 524
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	3 cut(s)	37, 263, 485
StyI	CCWWGG	2 cut(s)	50, 364
TaaI	ACNGT	3 cut(s)	154, 522, 535
TaqI	TCGA	1 cut(s)	267
TasI	AATT	3 cut(s)	37, 263, 485
TatI	WGTACW	1 cut(s)	535
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	157, 202
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	5 cut(s)	86, 164, 344, 347, 350
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	157, 202
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	263
XceI	RCATGY	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.