Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015219

Physical Location & Seq

Genomic Coordinates Reverse (-)

13488109 .. 13490926

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1039100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATCTCAGCCAGCCACAAGGGGAAAACTATGCCAACCCAAAGACTTGTTTCTTCCACGTTCTTTTCAAGGCTGGAGCATTGGCTTTTTACATACTTTCTGCCCTCTTTTTTGATAACTTTGTCATCATTTTTGTTGTGACTGTTCTTCTTTCCGCTCTTGATTTCTGGGTAGTTAAGAATGTTAGTGGACGCATCTTAGTTGGGTTGAGGTGGTGGAATGAAATAAATGATCTTGGTGAGAGTGTGTGGAAATTTGAATGCCTTGACCAGGAGTCATTGGCTCGGATGAACAAAAAGGATTCATGGCTCTTCTGGTGGACACTTTACATCACGGCTGTTGCATGGATTGTGCTTGGAATATTTTCTCTAATAAAGTTTCAGGCAGATTATCTCCTCGTAGTAGGAGTGTGTTTGACCCTTAGCATTGCGAATATTGTTGGCTTTACCAAATGCCGTAAAGACGCGAAAAAGCAGATCCAACAGTTTGCCTCCCAGACCATTGCATCCCGGTTCTCGTCTACAATACAATCAGCATTCAGTGTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009306 GO:0009653 GO:0009826 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016192 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032502 GO:0032588 GO:0032940 GO:0032989 GO:0033036 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF846

Protein Analysis

184

Amino Acids

20.87

Weight (kDa)

8.69

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF846	PF05832	13 - 152	2.5e-48	Eukaryotic protein of unknown function (DUF846)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09330
fragaria_vesca	FvH4_5g30460
malus_domestica	MD01G1039100.v1.1 MD15G1312600.v1.1
prunus_persica	Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1
pyrus_communis	pycom15g27620
rosa_chinensis	RchiOBHm_Chr7g0224911
rosa_laevigata	RLG00000001846
rosa_multiflora	Rmu_sc0000307.1_g000011
rosa_roxburghii	Rroxscaffold_3G00234290
rosa_rugosa	Rorug07G0226900
rosa_samantha	Rh7BG362300 Rh7DG372400
rosa_wichuraiana	Rw7G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	521
AccII	CGCG	1 cut(s)	467
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	12, 472
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	70, 260
AhdI	GACNNNNNGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	270
AlwI	GGATC	2 cut(s)	12, 472
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	364
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	251
BceAI	ACGGC	2 cut(s)	351, 441
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	272, 511
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmrFI	CCNGG	2 cut(s)	272, 511
BmsI	GCATC	2 cut(s)	204, 515
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse3DI	GCAATG	2 cut(s)	426, 501
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	2 cut(s)	294, 506
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	426, 501
BseMII	CTCAG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmI	GAATGC	2 cut(s)	266, 536
Bsp143I	GATC	3 cut(s)	4, 232, 477
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	467
BspPI	GGATC	2 cut(s)	12, 472
BspQI	GCTCTTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	426, 501
BssMI	GATC	3 cut(s)	4, 232, 477
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	145, 486
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	8, 199, 422
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	294, 506
BstFNI	CGCG	1 cut(s)	467
BstKTI	GATC	3 cut(s)	7, 235, 480
BstMBI	GATC	3 cut(s)	4, 232, 477
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	270, 509
BstUI	CGCG	1 cut(s)	467
BstX2I	RGATCY	2 cut(s)	4, 477
BstYI	RGATCY	2 cut(s)	4, 477
BtsCI	GGATG	2 cut(s)	294, 506
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	14
CseI	GACGC	2 cut(s)	201, 473
CviAII	CATG	2 cut(s)	306, 345
CviJI	RGCY	8 cut(s)	12, 16, 74, 86, 284, 310, 338, 444
CviKI_1	RGCY	8 cut(s)	12, 16, 74, 86, 284, 310, 338, 444
DdeI	CTNAG	3 cut(s)	8, 199, 422
DpnI	GATC	3 cut(s)	6, 234, 479
DpnII	GATC	3 cut(s)	4, 232, 477
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	317
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	309, 348
FaiI	YATR	4 cut(s)	33, 95, 307, 346
FatI	CATG	2 cut(s)	305, 344
FblI	GTMKAC	1 cut(s)	521
FokI	GGATG	2 cut(s)	301, 493
GsuI	CTGGAG	1 cut(s)	96
HapII	CCGG	1 cut(s)	511
HgaI	GACGC	2 cut(s)	201, 473
Hin1II	CATG	2 cut(s)	309, 348
HinfI	GANTC	2 cut(s)	275, 302
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	3 cut(s)	191, 321, 522
Hpy188I	TCNGA	2 cut(s)	288, 551
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	3 cut(s)	191, 321, 522
HpyCH4III	ACNGT	2 cut(s)	145, 486
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	344, 506
HpyF3I	CTNAG	3 cut(s)	8, 199, 422
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	309, 348
Kzo9I	GATC	3 cut(s)	4, 232, 477
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	9 cut(s)	26, 60, 154, 257, 284, 301, 368, 509, 524
LweI	GCATC	2 cut(s)	204, 515
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	6, 234, 479
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	3 cut(s)	4, 232, 477
MboII	GAAGA	3 cut(s)	46, 140, 304
MflI	RGATCY	2 cut(s)	4, 477
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	4 cut(s)	116, 204, 407, 502
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	1 cut(s)	177
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	2 cut(s)	272, 511
Mva1269I	GAATGC	2 cut(s)	266, 536
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	467
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	3 cut(s)	4, 232, 477
NlaIII	CATG	2 cut(s)	309, 348
NmuCI	GTSAC	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	2 cut(s)	266, 536
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PsuI	RGATCY	2 cut(s)	4, 477
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	4, 232, 477
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	2 cut(s)	272, 511
SetI	ASST	2 cut(s)	63, 215
SfaNI	GCATC	2 cut(s)	204, 515
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	2 cut(s)	363, 436
StyD4I	CCNGG	2 cut(s)	270, 509
TaaI	ACNGT	2 cut(s)	145, 486
TaiI	ACGT	1 cut(s)	63
TasI	AATT	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	237, 294, 305
TspRI	CASTG	1 cut(s)	547
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.