Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015219

Physical Location & Seq

Genomic Coordinates Reverse (-)

50432080 .. 50436424

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATCTGAGCCAGCCACAGGGAGAAAACTATGCCAACCCAAAGACGTGTTTCTTTCATGTTCTTTTCAAGGCTGCAGCATTGGCGTTTTACATCCTCTCAGCCCTGTTCTTTGATAACTTTGTTATCATTTTCGTTGTGACTGTTCTTCTCGCCGCTCTTGATTTCTGGGTGGTGAAGAATGTGAGTGGACGCATTTTAGTTGGTCTGAGGTGGTGGAATGAAATAAATGATCTTGGGGAGAGTGTGTGGAAATTTGAGTGCCTTGACCAAGAGTCATTGGCCAGGATGAACAAAAAGGATTCATGGCTATTCTGGTGGACACTTTATCTCACGGCTGGCTTGTGGATTGTGCTTGGAATATTTTCTCTGATTCGGTTTCAAGCTGATTATCTGCTCGTTATTGGAGTTTGTTTGACTCTCAGCATTGCAAATATAGTTGGATTCACCAAATGCCGTAAAGGTATGAAACTACAATATGAAGTTATTCATTTTACTTTATCTATATATTATCATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009306 GO:0009653 GO:0009826 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016192 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032502 GO:0032588 GO:0032940 GO:0032989 GO:0033036 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF846

Protein Analysis

173

Amino Acids

20.12

Weight (kDa)

7.68

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF846	PF05832	13 - 152	4.1e-48	Eukaryotic protein of unknown function (DUF846)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09330
fragaria_vesca	FvH4_5g30460
malus_domestica	MD01G1039100.v1.1 MD15G1312600.v1.1
prunus_persica	Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1
pyrus_communis	pycom15g27620
rosa_chinensis	RchiOBHm_Chr7g0224911
rosa_laevigata	RLG00000001846
rosa_multiflora	Rmu_sc0000307.1_g000011
rosa_roxburghii	Rroxscaffold_3G00234290
rosa_rugosa	Rorug07G0226900
rosa_samantha	Rh7BG362300 Rh7DG372400
rosa_wichuraiana	Rw7G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	70, 383
AhdI	GACNNNNNGTC	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	74, 77
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	2 cut(s)	364, 486
AsuHPI	GGTGA	2 cut(s)	187, 439
BalI	TGGCCA	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	61, 89
BceAI	ACGGC	2 cut(s)	351, 441
BciT130I	CCWGG	1 cut(s)	286
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	3 cut(s)	75, 78, 156
BlsI	GCNGC	3 cut(s)	76, 79, 157
Bme1390I	CCNGG	1 cut(s)	286
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	286
BseGI	GGATG	2 cut(s)	93, 294
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	114, 200, 436
BseXI	GCAGC	2 cut(s)	61, 89
BshFI	GGCC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	19
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	4, 232
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	113, 201, 435
BspMAI	CTGCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	426
BssMI	GATC	2 cut(s)	4, 232
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	14, 340
BstDEI	CTNAG	4 cut(s)	8, 100, 209, 422
BstF5I	GGATG	2 cut(s)	93, 294
BstKTI	GATC	2 cut(s)	7, 235
BstMBI	GATC	2 cut(s)	4, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	284
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	61, 89
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	93, 294
BtsIMutI	CAGTG	1 cut(s)	517
Cac8I	GCNNGC	2 cut(s)	14, 340
CseI	GACGC	1 cut(s)	201
CviAII	CATG	2 cut(s)	59, 306
CviJI	RGCY	9 cut(s)	12, 16, 74, 104, 284, 310, 338, 342, 386
CviKI_1	RGCY	9 cut(s)	12, 16, 74, 104, 284, 310, 338, 342, 386
DdeI	CTNAG	4 cut(s)	8, 100, 209, 422
DpnI	GATC	2 cut(s)	6, 234
DpnII	GATC	2 cut(s)	4, 232
DriI	GACNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	62, 309
FaiI	YATR	8 cut(s)	33, 60, 307, 437, 467, 480, 506, 508
FatI	CATG	2 cut(s)	58, 305
Fnu4HI	GCNGC	3 cut(s)	75, 78, 156
FokI	GGATG	2 cut(s)	80, 301
Fsp4HI	GCNGC	3 cut(s)	75, 78, 156
GluI	GCNGC	3 cut(s)	75, 78, 156
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	201
Hin1II	CATG	2 cut(s)	62, 309
HinfI	GANTC	5 cut(s)	275, 302, 373, 418, 444
HphI	GGTGA	2 cut(s)	187, 439
Hpy166II	GTNNAC	2 cut(s)	191, 321
Hpy188I	TCNGA	3 cut(s)	9, 210, 372
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	2 cut(s)	191, 321
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	2 cut(s)	77, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	8, 100, 209, 422
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	2 cut(s)	62, 309
Kzo9I	GATC	2 cut(s)	4, 232
LpnPI	CCDG	8 cut(s)	5, 26, 119, 154, 271, 298, 301, 324
Lsp1109I	GCAGC	2 cut(s)	61, 89
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	6, 234
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	2 cut(s)	4, 232
MboII	GAAGA	2 cut(s)	140, 190
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	284, 412
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	2 cut(s)	107, 204
Mox20I	TGGCCA	1 cut(s)	284
MroXI	GAANNNNTTC	2 cut(s)	364, 486
MscI	TGGCCA	1 cut(s)	284
Msp20I	TGGCCA	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	2 cut(s)	4, 232
NlaIII	CATG	2 cut(s)	62, 309
NmuCI	GTSAC	1 cut(s)	139
PdmI	GAANNNNTTC	2 cut(s)	364, 486
PfeI	GAWTC	3 cut(s)	302, 373, 444
PkrI	GCNGC	3 cut(s)	76, 79, 157
PleI	GAGTC	2 cut(s)	283, 412
PpsI	GAGTC	2 cut(s)	283, 412
Psp6I	CCWGG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	4
SatI	GCNGC	3 cut(s)	75, 78, 156
Sau3AI	GATC	2 cut(s)	4, 232
SchI	GAGTC	2 cut(s)	284, 412
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	4 cut(s)	50, 215, 388, 466
SfcI	CTRYAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	1 cut(s)	156
SspI	AATATT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	50
TasI	AATT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	302, 373, 444
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	74, 77
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	7 cut(s)	47, 237, 294, 305, 479, 482, 495
XapI	RAATTY	1 cut(s)	254
XmnI	GAANNNNTTC	2 cut(s)	364, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.