Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015219

Physical Location & Seq

Genomic Coordinates Forward (+)

31537844 .. 31540842

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1312600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATCTCAGCCAGCCACAAGGGGAAAACTATGCCAACCCAAAGACATGTTTCTTCCATGTTCTGTTCAAGGCTGGAGCATTGGCTTTTTACATACTTTCTGCCCTCTTTTTTGATAACTTTGTCATCATTTTTGTCGTGACTGTTCTTCTTGCCGCTCTTGATTTCTGGGTAGTTAAGAATGTCAGTGGACGCATCTTAGTTGGTTTGAGGTGGTGGAATGAAATAAATGATCTTGGGGAGAGCGTGTGGAAATTTGAATGCCTTGACCAAGAGTCATTGGCCCGGATGAACAAAAAGGATTCATGGCTCTTCTGGTGGACACTTTACATCACGGCTGTCGCATGGATTGTGCTTGGAATATTTTCTCTAATAAAGTTTCAGGCAGATTATCTCCTCGTTGTAGGAGTTTGTTTGACCCTGAGCATTGCAAACATTGTTGGCTTTACCAAATGCCGCAAAGATGCGAAAAAGCAGATCCAACAGTTTGCGTCCCAGACCATTGCATCGCGGTTCTCGTCCACAATACAATCAGCATTCAGTGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000902 GO:0002790 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0006810 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009306 GO:0009653 GO:0009826 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016192 GO:0030173 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0032502 GO:0032588 GO:0032940 GO:0032989 GO:0033036 GO:0040007 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048589 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF846

Protein Analysis

184

Amino Acids

20.86

Weight (kDa)

8.69

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF846	PF05832	13 - 152	3.4e-48	Eukaryotic protein of unknown function (DUF846)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09330
fragaria_vesca	FvH4_5g30460
malus_domestica	MD01G1039100.v1.1 MD15G1312600.v1.1
prunus_persica	Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1 Prupe.1G561100_v2.0.a1
pyrus_communis	pycom15g27620
rosa_chinensis	RchiOBHm_Chr7g0224911
rosa_laevigata	RLG00000001846
rosa_multiflora	Rmu_sc0000307.1_g000011
rosa_roxburghii	Rroxscaffold_3G00234290
rosa_rugosa	Rorug07G0226900
rosa_samantha	Rh7BG362300 Rh7DG372400
rosa_wichuraiana	Rw7G031410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	511
AciI	CCGC	3 cut(s)	156, 457, 511
AclWI	GGATC	2 cut(s)	12, 472
AcsI	RAATTY	1 cut(s)	254
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	2 cut(s)	70, 260
AhdI	GACNNNNNGTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	12, 472
AoxI	GGCC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	286
BisI	GCNGC	2 cut(s)	156, 457
BlsI	GCNGC	2 cut(s)	157, 458
Bme1390I	CCNGG	1 cut(s)	286
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	204, 454, 515
BpmI	CTGGAG	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	1 cut(s)	286
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bse3DI	GCAATG	2 cut(s)	426, 501
BseGI	GGATG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	426, 501
BseMII	CTCAG	2 cut(s)	22, 413
BseRI	GAGGAG	1 cut(s)	386
Bsh1236I	CGCG	1 cut(s)	511
BshFI	GGCC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	478
BsmFI	GGGAC	1 cut(s)	478
BsmI	GAATGC	2 cut(s)	266, 536
BsnI	GGCC	1 cut(s)	284
Bsp143I	GATC	3 cut(s)	4, 232, 477
BspACI	CCGC	3 cut(s)	156, 457, 511
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	21, 414
BspFNI	CGCG	1 cut(s)	511
BspPI	GGATC	2 cut(s)	12, 472
BspQI	GCTCTTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	426, 501
BssMI	GATC	3 cut(s)	4, 232, 477
Bst4CI	ACNGT	2 cut(s)	145, 486
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	3 cut(s)	8, 199, 422
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	511
BstKTI	GATC	3 cut(s)	7, 235, 480
BstMBI	GATC	3 cut(s)	4, 232, 477
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	284
BstUI	CGCG	1 cut(s)	511
BstX2I	RGATCY	2 cut(s)	4, 477
BstYI	RGATCY	2 cut(s)	4, 477
BsuRI	GGCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	193, 547
Cac8I	GCNNGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	2 cut(s)	201, 480
CviAII	CATG	4 cut(s)	48, 59, 306, 345
CviJI	RGCY	8 cut(s)	12, 16, 74, 86, 284, 310, 338, 444
CviKI_1	RGCY	8 cut(s)	12, 16, 74, 86, 284, 310, 338, 444
DdeI	CTNAG	3 cut(s)	8, 199, 422
DpnI	GATC	3 cut(s)	6, 234, 479
DpnII	GATC	3 cut(s)	4, 232, 477
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	317
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	317
FaeI	CATG	4 cut(s)	51, 62, 309, 348
FaiI	YATR	6 cut(s)	33, 49, 60, 95, 307, 346
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	4 cut(s)	47, 58, 305, 344
Fnu4HI	GCNGC	2 cut(s)	156, 457
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	156, 457
GluI	GCNGC	2 cut(s)	156, 457
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	286
HgaI	GACGC	2 cut(s)	201, 480
Hin1II	CATG	4 cut(s)	51, 62, 309, 348
HinfI	GANTC	2 cut(s)	275, 302
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	3 cut(s)	191, 321, 522
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	2 cut(s)	139, 161
Hpy8I	GTNNAC	3 cut(s)	191, 321, 522
HpyCH4III	ACNGT	2 cut(s)	145, 486
HpyCH4V	TGCA	2 cut(s)	431, 506
HpyF3I	CTNAG	3 cut(s)	8, 199, 422
Hsp92II	CATG	4 cut(s)	51, 62, 309, 348
Kzo9I	GATC	3 cut(s)	4, 232, 477
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	8 cut(s)	26, 60, 154, 299, 301, 368, 434, 509
LweI	GCATC	3 cut(s)	204, 454, 515
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	6, 234, 479
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	3 cut(s)	4, 232, 477
MboII	GAAGA	3 cut(s)	46, 140, 304
MflI	RGATCY	2 cut(s)	4, 477
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	3 cut(s)	116, 204, 407
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	1 cut(s)	177
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	2 cut(s)	266, 536
MvnI	CGCG	1 cut(s)	511
NciI	CCSGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	4, 232, 477
NlaIII	CATG	4 cut(s)	51, 62, 309, 348
NmuCI	GTSAC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	51
PciI	ACATGT	1 cut(s)	47
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PctI	GAATGC	2 cut(s)	266, 536
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	157, 458
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	2 cut(s)	4, 477
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	2 cut(s)	156, 457
Sau3AI	GATC	3 cut(s)	4, 232, 477
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	286
SetI	ASST	1 cut(s)	215
SfaNI	GCATC	3 cut(s)	204, 454, 515
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	3 cut(s)	156, 457, 511
SspI	AATATT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	145, 486
TasI	AATT	1 cut(s)	254
TauI	GCSGC	2 cut(s)	158, 459
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	2 cut(s)	193, 547
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	237, 294, 305
TspRI	CASTG	2 cut(s)	193, 547
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	51
XmnI	GAANNNNTTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.