Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013862

Physical Location & Seq

Genomic Coordinates Reverse (-)

3360087 .. 3360508

Gene Structure 422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACGACAATACAAAGTTTGAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCATATGTTCTTTTCACATTGGACAAGCTAGTTCAGAAGTTTGTTAAGCATCTCCATGCAGTTGCATCTGATGAAACAGACACCAAGCTTCTGCAACTACATGCGTATGAGAACTACAGAAAACTTTGGGAAGATGATTTGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

77

Amino Acids

9.0

Weight (kDa)

4.63

Isoelectric Point (pI)

21.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sin3a_C	PF16879	2 - 68	2.7e-18	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10250
fragaria_vesca	FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790
malus_domestica	MD09G1041300.v1.1 MD17G1042600.v1.1
pyrus_communis	pycom111g03230 pycom17g03820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	56
AluBI	AGCT	3 cut(s)	71, 115, 175
AluI	AGCT	3 cut(s)	71, 115, 175
Alw21I	GWGCWC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	85
BfaI	CTAG	2 cut(s)	116, 232
BfmI	CTRYAG	1 cut(s)	202
BmsI	GCATC	2 cut(s)	145, 161
BseGI	GGATG	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	1 cut(s)	228
BssMI	GATC	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	29, 87
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstNSI	RCATGY	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	10
CviAII	CATG	2 cut(s)	143, 188
CviJI	RGCY	3 cut(s)	71, 115, 175
CviKI_1	RGCY	3 cut(s)	71, 115, 175
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
FaeI	CATG	2 cut(s)	146, 191
FaiI	YATR	6 cut(s)	15, 91, 93, 144, 189, 195
FatI	CATG	2 cut(s)	142, 187
FauNDI	CATATG	1 cut(s)	91
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	2 cut(s)	116, 232
FspEI	CC	8 cut(s)	12, 63, 80, 92, 155, 184, 199, 200
Hin1II	CATG	2 cut(s)	146, 191
HindIII	AAGCTT	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	123, 157
HpyCH4III	ACNGT	2 cut(s)	29, 87
HpyCH4V	TGCA	4 cut(s)	8, 146, 152, 181
Hsp92II	CATG	2 cut(s)	146, 191
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	80
LweI	GCATC	2 cut(s)	145, 161
MaeI	CTAG	2 cut(s)	116, 232
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	68, 230
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	16
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	141, 192
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	146, 191
NmeAIII	GCCGAG	1 cut(s)	92
NspI	RCATGY	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	141, 192
SaqAI	TTAA	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	73, 117, 177
SfaNI	GCATC	2 cut(s)	145, 161
SfcI	CTRYAG	1 cut(s)	202
SgeI	CNNG	7 cut(s)	35, 80, 124, 128, 155, 184, 200
SmiMI	CAYNNNNRTG	2 cut(s)	141, 192
Sse9I	AATT	1 cut(s)	16
SspMI	CTAG	2 cut(s)	116, 232
TaaI	ACNGT	2 cut(s)	29, 87
TasI	AATT	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	174
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	2 cut(s)	116, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.