Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013862

Physical Location & Seq

Genomic Coordinates Reverse (-)

2653010 .. 2662033

Gene Structure 9024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1041300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4140 bp

ATGATTTTGTATCGGCAATCCCAGATACCGGGGGGAGGAGGTGGAGGAGGGGGCGTTGGAGTAGGTGGAGCTGGGCCCATTGGAGGAGGAGGAGGAGGTGCTTCACAGAAATTGACCACCAATGACGCTCTAACCTATCTCAAAGAGGTGAAGGACATGTTTTTAGACCAAAGAGAAAAATACGATACGTTTCTTGAGGTTATGAAAGATTTCAAGGCCCAAAGAACTGACACAGCAGGTGTCATTGCAAGAGTAAAGGAATTATTTAAAGGGCATAACAACTTAATTTTGGGCTTTAATACCTTCTTGCCGAAGGGTTATGAGATAACCCTCGATGAAGATGAGACTCCACCAAAAAAGACAGTTGAGTTTGAGGAAGCTATCAGTTTTGTAAACAAGATAAAGAAACGTTTCCAAAATGATGATCATGTCTATAAATCATTCCTAGACATACTGAACATGTATCGAAAGGAGCACAAGGATATAAATGAGGTCTACAGTGAGGTTGCTGCTCTTTTTGATGAGCATCCCGATTTGCTTGATGAGTTCACCAGATTTTTACCAGATGCGTCAGCAGCAGCTTCAGCACATCAAGCTCAATACGGCCGCAATTCATTTCCACGTTTCAATGAGCGAAGCTCTGCTACACCCACATTTCGGCCAATGCATATGGAGAAGCAACGTAGGAGGGATAGGATCATGACATCCCATGCTGATCGTGATCTTAGTGTTGATTGTCCTGAGCTAGACGATGACAAAGGAACGGTGAAAGTTCAGAAGGAGCATAGAAAGCGTAGTGAAAAGGAGAATAGGGATAGAAGAAATCGGGACGATGATGATAGAGAATTAGAGAATGATAACAGTGTCTACAAATTGCAGCGTTTTCCTGACAAAAGAAAATCCACCAGGAAGGTTGAAGGTTTTGGTTTGACTGCTAACTTTGCTCCTTATGATGACAAAGACTCCTTAAAGAGCATGTACAGCCAGGGATTCGTTTTCTGTGAGAAGGTGAAGGAGAGGTTGTGTAGTCAAGATGACTACCAGGCATTTTTGAAGTTGCTTAACATTTATAGCAACGGAATAATTAAAAGGAATGATCTGCAAGGTTTGGTGACTGATTTATTGGGAAAGTATTCAGATCTTATGGAGGAGTTTAATGATTTTTTGGAGCGTTGTGAGAATATAGATGGGTTCCTTGCTGGTGTTATGAGTAGAAAATCTCTGAGTAGTGATGGTCCTGTTCCTTTTTCTAGACCGGTGAAGGTAGAGGACAAAGATAAAGAGCCAAAGCGTGAAACGGAGGGAGCTAAAGAAAAGGAAAGATACAGGGAGAAGTATTGGGCAAAATCTATTCAAGAGCTTGATCTCTCTAACTGTGAACGTTGTACTCCAAGCTATCGGCTTCTGCCTGAAGACTATCCAATACCTTCAGCAAGCCAGAGATCAGAACTTGGTGCTCAGGTTTTGAATGACCATTGGGTCTCTGTGACTTCAGGAAGTGAAGATTACTCTTTTAAACATATGCGCAGAAATCAGTATGAAGAAAGTCTGTTCAGATGCGAGGATGATAGGTTTGAGTTGGATATGTTGTTAGAGTCGGTGAGCTCAACCGCTAAGCGAGCAGAGGAACTCTTGAACAGCATTAATGAAAATAAGATCAGCATGGAAACTTCAATCCGTATTGAAGACCACTTCACTGCGTTAAATTTAAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGGTGGACATACTGCGGAAAAATCCAACTCTGGCTTTGCCTGTTGTATTAACTCGCCTGAAGCAGAAACAAGAAGAGTGGACAAGGTGTAGATCCGATTTTAACAAGGTCTGGGCTGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGTAGCAAATCTTTGGTGGCTGAGATCAAGGAATTGAAAGAGAAAAAGCAGATAGAGGATGATATCCTTCTGGCCGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATATGGAGTTTGAATACTTAGATATCAGCTTACATGAAGACTTGTATAAACTTGTCCAATATTCATGTGAAGAGGTTTTCTCAACAAAAGAACAATTAAATAAGGCTATGAGACTTTACACTACCTTTTTGGAGCCAATGCTGGGTGTTTCTTCTCGGCCCAATGATTCAGAGGATGATGAAGATGTTGACAAAAGTAGGAATCAGGCTAAGAATTGTACTGCGTCAAGCATGGGAGAAAGCGATGGAAGTCCTGGTGGTGATTCTGCCACAGTGAATTTTAAGCAGCCCAAATCTGTGTGTAATGAAGAAGAAAATGCTTTAGCAGAAGTGGAAAGTTTGGCTAACGGGGATAACTCGGCTAAAGAAGATGGAAGTCGTGATGCAGATCTTGTCTGTAGGAAAGATTCTATATCTGAGAAAATTCAACTAGAAAAAGACCAGAAGAATATGGATGTCCCTAAGAAAAGGTATCTGGGCACCGGCATGGACAATGCTTGGCCGTCCAGTCAACCATCACATCCAATTGGAGCAGATAATAATCATGGTAGAACGAGCTTGGAAGTGTTATCAGGGTGTGCTGCAACCACGTCAAGGCCTGGTGCTTCTATTAGTGACAATGACCATTTACAGAAGGGAAATGCTGATGCTGTTCCGTTGTCAGAGGGTGTCGATAATGCAAAACCTGCTTTAATTGCTAATGGAGTGTTTCCAGAAAGCACTAAAGTTAGCAGTCGTCATGAAGAGTCTGTTGGGCCCTCCAAAATTGAAAAGGAAGAGGGGGAATTATCACCAATTGCTGACTTTGGGGAGGATAACTTTGTTGTCTCTGGAGATGCTGGGGTGCAAGCTATGCCTAAGGCAAACCGCAGTGTTGAAAGCCGACCGTTTCAGTCTGGGAATGGGGAAGACATTAGTTGTCAGGAAGCTGGAGAAAATGATGCAGATGCAGATGATGAAAATAGTGAAAATGTTTCCGAGGCTGGTGAAGATGTCTCTGGCAGTGAGACAGCTGGTGATGAATGTTCCAGAGAAGAGCAAGGCGATGATGAAGACGCTGAACCGGATGACATTGATGGTAAGGCTGAGAGTGAAGGTGAGGCAGAAGGGATGGCGGATGGGCATCTTGTTGGAGGAGATGGAACGTCCTCGCAATTGTCAGAACGTTTTCTTTTGTCTGTGAAACCTCTTGCGAAGCATGTACCAGGTTATTTACTTGAAGAAAGGAAAGACTCTCGCGTTTTCTATGGGAATGATAATTTCTATGTGCTTTGCAGGCTTCATCAAATTCTATACGAAAGGATTTTGTCTGCAAAAACAAGTTCCACAGGTGCAGAAATGAAATGGAGAACTTCAAAGGATGGCAGTTCTCCGGATCTGTATGCCAGATTTATGAGTGCTCTATACAATTTGCTTGATGGATCTGTTGATAATGCAAAATTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCTTATATATTATTCACCTTGGACAAATTAATATATAAATTCGTCAAACAGCTTCAAACTGTTGCAAGTGATGAGACGGACAATAAGCTTCTTCAATTATATGAATATGAAAAGTCCCGGAAAACTGGGAAGTTAATTGATTCTGTTTATCATGAAAATGCACGGGTCCTCATTCATGAGGAGAATATTTACAGATTGGAATTTTCCTCTTCACCCTCCCGGCTGTCCATCCAGCTGATGGACAGTGTGAGTGAAAAGCCTGAGGTGTTTGCAGTTTCCATGGAACCTAATTTTGCATCCTATCTGCACAATGAATTTCTGCCGGTTTATCCTGGGAAAAAGGAGCCGCATGGGATTACCCTTCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCTTCCTTTTGCAAGGCCATGGACGGTGTTCAGTTAGTCAATGGTTTGGAGTGCAAGATAGCTTGCAACTCATCCAAGATCTCTTACGTTCTTGACACAGAAGATTACTTCTTCCGTGTGAGAAGGAAAAGGACATCTGAGGCCAGATCACCATATTCTGATCAGACGAGAGTACAGCGATTCCACAAATTCTTATCAATCTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1380

Amino Acids

155.75

Weight (kDa)

5.11

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	59 - 103	6.1e-18	Paired amphipathic helix repeat
PAH	PF02671	143 - 187	8e-19	Paired amphipathic helix repeat
PAH	PF02671	346 - 389	7.8e-13	Paired amphipathic helix repeat
Sin3_corepress	PF08295	460 - 552	1e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1099 - 1347	2.4e-48	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10250
fragaria_vesca	FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790
malus_domestica	MD09G1041300.v1.1 MD17G1042600.v1.1
pyrus_communis	pycom111g03230 pycom17g03820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
AasI	GACNNNNNNGTC	1 cut(s)	1478
Acc16I	TGCGCA	1 cut(s)	1526
Acc36I	ACCTGC	2 cut(s)	227, 2746
AccB1I	GGYRCC	1 cut(s)	2531
AccB7I	CCANNNNNTGG	1 cut(s)	3766
AccI	GTMKAC	2 cut(s)	495, 867
AccII	CGCG	1 cut(s)	3291
AccIII	TCCGGA	1 cut(s)	3424
AciI	CCGC	6 cut(s)	607, 1611, 1765, 2920, 3167, 3875
AclI	AACGTT	4 cut(s)	409, 1381, 1723, 3217
AclWI	GGATC	4 cut(s)	704, 1836, 3435, 3481
AcoI	YGGCCR	4 cut(s)	604, 659, 2016, 2552
AcsI	RAATTY	9 cut(s)	1705, 2329, 2475, 3339, 3491, 3566, 3728, 3842, 4118
AcuI	CTGAAG	6 cut(s)	567, 1413, 1431, 1476, 1829, 3875
AfaI	GTAC	5 cut(s)	980, 1387, 2272, 3255, 4104
AfiI	CCNNNNNNNGG	7 cut(s)	28, 35, 83, 657, 2195, 2646, 3766
AflIII	ACRYGT	2 cut(s)	156, 459
AgeI	ACCGGT	1 cut(s)	1255
AjiI	CACGTC	1 cut(s)	2643
AjnI	CCWGG	7 cut(s)	905, 984, 1041, 2305, 2650, 3256, 3859
AjuI	GAANNNNNNNTTGG	2 cut(s)	2787, 2819
Alw21I	GWGCWC	4 cut(s)	477, 1459, 1607, 3454
Alw26I	GTCTC	7 cut(s)	338, 1486, 2158, 2884, 3052, 3053, 3596
AlwI	GGATC	4 cut(s)	704, 1836, 3435, 3481
Aor13HI	TCCGGA	1 cut(s)	3424
ApaI	GGGCCC	2 cut(s)	78, 2811
ApeKI	GCWGC	7 cut(s)	509, 575, 578, 877, 2024, 2338, 2633
ApoI	RAATTY	9 cut(s)	1705, 2329, 2475, 3339, 3491, 3566, 3728, 3842, 4118
AseI	ATTAAT	2 cut(s)	1644, 3557
AsiGI	ACCGGT	1 cut(s)	1255
Asp700I	GAANNNNTTC	4 cut(s)	209, 410, 1132, 3219
AspLEI	GCGC	2 cut(s)	1527, 3906
AspS9I	GGNCC	8 cut(s)	74, 75, 217, 1235, 2211, 2807, 2808, 3694
AsuC2I	CCSGG	3 cut(s)	30, 3646, 3748
AvaII	GGWCC	2 cut(s)	1235, 3694
AxyI	CCTNAGG	2 cut(s)	2910, 3789
BaeGI	GKGCMC	3 cut(s)	78, 2534, 2811
BanI	GGYRCC	1 cut(s)	2531
BanII	GRGCYC	3 cut(s)	78, 1607, 2811
BarI	GAAGNNNNNNTAC	2 cut(s)	628, 660
BbsI	GAAGAC	5 cut(s)	1419, 1692, 2097, 2967, 3111
Bbv12I	GWGCWC	4 cut(s)	477, 1459, 1607, 3454
BbvI	GCAGC	7 cut(s)	496, 587, 590, 889, 2011, 2350, 2620
BceAI	ACGGC	3 cut(s)	619, 2003, 2539
BciT130I	CCWGG	7 cut(s)	907, 986, 1043, 2307, 2652, 3258, 3861
BclI	TGATCA	3 cut(s)	424, 1900, 4090
BcnI	CCSGG	3 cut(s)	30, 3646, 3748
BcoDI	GTCTC	7 cut(s)	338, 1486, 2158, 2884, 3052, 3053, 3596
BfaI	CTAG	4 cut(s)	446, 746, 1251, 2483
BfmI	CTRYAG	3 cut(s)	496, 2043, 2449
BfuAI	ACCTGC	2 cut(s)	227, 2746
BglII	AGATCT	3 cut(s)	1138, 2440, 4008
BisI	GCNGC	9 cut(s)	510, 576, 579, 607, 878, 2025, 2339, 2634, 3875
BlpI	GCTNAGC	1 cut(s)	1614
BlsI	GCNGC	9 cut(s)	511, 577, 580, 608, 879, 2026, 2340, 2635, 3876
Bme18I	GGWCC	2 cut(s)	1235, 3694
BmgBI	CACGTC	1 cut(s)	2643
BmgT120I	GGNCC	8 cut(s)	74, 75, 217, 1235, 2211, 2807, 2808, 3694
BmiI	GGNNCC	8 cut(s)	76, 1193, 2187, 2533, 2809, 3695, 3813, 3873
BmrI	ACTGGG	1 cut(s)	3663
BmuI	ACTGGG	1 cut(s)	3663
BoxI	GACNNNNGTC	1 cut(s)	1740
BpiI	GAAGAC	5 cut(s)	1419, 1692, 2097, 2967, 3111
BplI	GAGNNNNNCTC	4 cut(s)	623, 655, 2117, 2149
BpmI	CTGGAG	2 cut(s)	2904, 3003
Bpu10I	CCTNAGC	2 cut(s)	741, 1458
Bpu1102I	GCTNAGC	1 cut(s)	1614
BpuEI	CTTGAG	2 cut(s)	215, 1963
BpuMI	CCSGG	3 cut(s)	30, 3646, 3748
BsaBI	GATNNNNATC	5 cut(s)	525, 720, 2439, 2592, 3174
BsaI	GGTCTC	1 cut(s)	1486
BsaJI	CCNNGG	8 cut(s)	29, 985, 1738, 3030, 3546, 3807, 3860, 3948
BsaWI	WCCGGW	4 cut(s)	1255, 1905, 3115, 3424
BsaXI	ACNNNNNCTCC	6 cut(s)	39, 69, 947, 977, 1007, 1037
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 35, 83, 657, 2195, 2646, 3766
Bse118I	RCCGGY	3 cut(s)	1255, 2534, 3850
Bse1I	ACTGG	3 cut(s)	2559, 3526, 3658
Bse21I	CCTNAGG	2 cut(s)	2910, 3789
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	5 cut(s)	525, 720, 2439, 2592, 3174
BseAI	TCCGGA	1 cut(s)	3424
BseBI	CCWGG	7 cut(s)	907, 986, 1043, 2307, 2652, 3258, 3861
BseDI	CCNNGG	8 cut(s)	29, 985, 1738, 3030, 3546, 3807, 3860, 3948
BseJI	GATNNNNATC	5 cut(s)	525, 720, 2439, 2592, 3174
BseLI	CCNNNNNNNGG	7 cut(s)	28, 35, 83, 657, 2195, 2646, 3766
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	8 cut(s)	732, 1214, 1472, 1956, 2460, 3129, 3780, 4059
BseNI	ACTGG	3 cut(s)	2559, 3526, 3658
BseRI	GAGGAG	9 cut(s)	51, 60, 99, 102, 105, 108, 1163, 3201, 3722
BseSI	GKGCMC	3 cut(s)	78, 2534, 2811
BseX3I	CGGCCG	1 cut(s)	604
BseXI	GCAGC	7 cut(s)	496, 587, 590, 889, 2011, 2350, 2620
BseYI	CCCAGC	3 cut(s)	71, 2194, 2891
BsgI	GTGCAG	2 cut(s)	3405, 3818
Bsh1236I	CGCG	1 cut(s)	3291
Bsh1285I	CGRYCG	2 cut(s)	607, 2939
BshNI	GGYRCC	1 cut(s)	2531
BshTI	ACCGGT	1 cut(s)	1255
BsiEI	CGRYCG	2 cut(s)	607, 2939
BsiHKAI	GWGCWC	4 cut(s)	477, 1459, 1607, 3454
BsiSI	CCGG	9 cut(s)	29, 1256, 1906, 2535, 3116, 3425, 3646, 3748, 3851
BslFI	GGGAC	3 cut(s)	842, 2495, 3628
BslI	CCNNNNNNNGG	7 cut(s)	28, 35, 83, 657, 2195, 2646, 3766
BsmAI	GTCTC	7 cut(s)	338, 1486, 2158, 2884, 3052, 3053, 3596
BsmBI	CGTCTC	1 cut(s)	3596
BsmFI	GGGAC	3 cut(s)	842, 2495, 3628
BsmI	GAATGC	1 cut(s)	3509
Bso31I	GGTCTC	1 cut(s)	1486
Bsp120I	GGGCCC	2 cut(s)	74, 2807
Bsp1286I	GDGCHC	7 cut(s)	78, 477, 1459, 1607, 2534, 2811, 3454
Bsp13I	TCCGGA	1 cut(s)	3424
Bsp1407I	TGTACA	1 cut(s)	978
Bsp1720I	GCTNAGC	1 cut(s)	1614
Bsp19I	CCATGG	3 cut(s)	1738, 3807, 3948
BspACI	CCGC	6 cut(s)	607, 1611, 1765, 2920, 3167, 3875
BspCNI	CTCAG	8 cut(s)	733, 1215, 1471, 1957, 2461, 3130, 3781, 4060
BspEI	TCCGGA	1 cut(s)	3424
BspFNI	CGCG	1 cut(s)	3291
BspHI	TCATGA	4 cut(s)	699, 2791, 3679, 3703
BspLI	GGNNCC	8 cut(s)	76, 1193, 2187, 2533, 2809, 3695, 3813, 3873
BspMI	ACCTGC	2 cut(s)	227, 2746
BspPI	GGATC	4 cut(s)	704, 1836, 3435, 3481
BspQI	GCTCTTC	1 cut(s)	3081
BspT107I	GGYRCC	1 cut(s)	2531
BspTNI	GGTCTC	1 cut(s)	1486
BsrDI	GCAATG	1 cut(s)	243
BsrFI	RCCGGY	3 cut(s)	1255, 2534, 3850
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	3 cut(s)	2559, 3526, 3658
BssAI	RCCGGY	3 cut(s)	1255, 2534, 3850
BssECI	CCNNGG	8 cut(s)	29, 985, 1738, 3030, 3546, 3807, 3860, 3948
BssT1I	CCWWGG	4 cut(s)	1738, 3546, 3807, 3948
Bst2UI	CCWGG	7 cut(s)	907, 986, 1043, 2307, 2652, 3258, 3861
Bst6I	CTCTTC	7 cut(s)	1818, 2118, 2790, 2823, 3081, 3742, 3937
BstAPI	GCANNNNNTGC	2 cut(s)	2738, 2905
BstAUI	TGTACA	1 cut(s)	978
BstC8I	GCNNGC	5 cut(s)	1435, 1620, 2901, 3329, 3994
BstDSI	CCRYGG	3 cut(s)	1738, 3807, 3948
BstEII	GGTNACC	1 cut(s)	1733
BstFNI	CGCG	1 cut(s)	3291
BstHHI	GCGC	2 cut(s)	1527, 3906
BstMAI	GTCTC	7 cut(s)	338, 1486, 2158, 2884, 3052, 3053, 3596
BstMCI	CGRYCG	2 cut(s)	607, 2939
BstNI	CCWGG	7 cut(s)	907, 986, 1043, 2307, 2652, 3258, 3861
BstNSI	RCATGY	4 cut(s)	160, 463, 979, 3254
BstPAI	GACNNNNGTC	1 cut(s)	1740
BstPI	GGTNACC	1 cut(s)	1733
BstSFI	CTRYAG	3 cut(s)	496, 2043, 2449
BstSLI	GKGCMC	3 cut(s)	78, 2534, 2811
BstUI	CGCG	1 cut(s)	3291
BstV1I	GCAGC	7 cut(s)	496, 587, 590, 889, 2011, 2350, 2620
BstV2I	GAAGAC	5 cut(s)	1419, 1692, 2097, 2967, 3111
BstX2I	RGATCY	6 cut(s)	1138, 1841, 2440, 3427, 3473, 4008
BstYI	RGATCY	6 cut(s)	1138, 1841, 2440, 3427, 3473, 4008
BstZI	CGGCCG	1 cut(s)	604
Bsu36I	CCTNAGG	2 cut(s)	2910, 3789
BtgI	CCRYGG	3 cut(s)	1738, 3807, 3948
BtgZI	GCGATG	2 cut(s)	2310, 3111
BtrI	CACGTC	1 cut(s)	2643
BtsI	GCAGTG	3 cut(s)	1695, 2929, 3061
BtsIMutI	CAGTG	7 cut(s)	505, 868, 1695, 2331, 2929, 3061, 3778
BveI	ACCTGC	2 cut(s)	227, 2746
Cac8I	GCNNGC	5 cut(s)	1435, 1620, 2901, 3329, 3994
CciI	TCATGA	4 cut(s)	699, 2791, 3679, 3703
CfoI	GCGC	2 cut(s)	1527, 3906
Cfr10I	RCCGGY	3 cut(s)	1255, 2534, 3850
Cfr13I	GGNCC	8 cut(s)	74, 75, 217, 1235, 2211, 2807, 2808, 3694
CseI	GACGC	4 cut(s)	134, 558, 2265, 3116
CsiI	ACCWGGT	1 cut(s)	3256
Csp6I	GTAC	5 cut(s)	979, 1386, 2271, 3254, 4103
CspAI	ACCGGT	1 cut(s)	1255
CspCI	CAANNNNNGTGG	2 cut(s)	1808, 1843
CviQI	GTAC	5 cut(s)	979, 1386, 2271, 3254, 4103
DraI	TTTAAA	2 cut(s)	268, 1516
DrdI	GACNNNNNNGTC	1 cut(s)	1478
DseDI	GACNNNNNNGTC	1 cut(s)	1478
EaeI	YGGCCR	4 cut(s)	604, 659, 2016, 2552
EagI	CGGCCG	1 cut(s)	604
Eam1104I	CTCTTC	7 cut(s)	1818, 2118, 2790, 2823, 3081, 3742, 3937
EarI	CTCTTC	7 cut(s)	1818, 2118, 2790, 2823, 3081, 3742, 3937
EciI	GGCGGA	1 cut(s)	3182
Ecl136II	GAGCTC	1 cut(s)	1605
EclXI	CGGCCG	1 cut(s)	604
Eco130I	CCWWGG	4 cut(s)	1738, 3546, 3807, 3948
Eco147I	AGGCCT	1 cut(s)	2650
Eco24I	GRGCYC	3 cut(s)	78, 1607, 2811
Eco31I	GGTCTC	1 cut(s)	1486
Eco32I	GATATC	2 cut(s)	2008, 2077
Eco47I	GGWCC	2 cut(s)	1235, 3694
Eco52I	CGGCCG	1 cut(s)	604
Eco53kI	GAGCTC	1 cut(s)	1605
Eco57I	CTGAAG	6 cut(s)	567, 1413, 1431, 1476, 1829, 3875
Eco81I	CCTNAGG	2 cut(s)	2910, 3789
Eco91I	GGTNACC	1 cut(s)	1733
EcoICRI	GAGCTC	1 cut(s)	1605
EcoO109I	RGGNCCY	2 cut(s)	2808, 3694
EcoO65I	GGTNACC	1 cut(s)	1733
EcoRII	CCWGG	7 cut(s)	905, 984, 1041, 2305, 2650, 3256, 3859
EcoRV	GATATC	2 cut(s)	2008, 2077
EcoT14I	CCWWGG	4 cut(s)	1738, 3546, 3807, 3948
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	3 cut(s)	78, 1607, 2811
ErhI	CCWWGG	4 cut(s)	1738, 3546, 3807, 3948
Esp3I	CGTCTC	1 cut(s)	3596
FaqI	GGGAC	3 cut(s)	842, 2495, 3628
FauNDI	CATATG	3 cut(s)	669, 1521, 2055
FbaI	TGATCA	3 cut(s)	424, 1900, 4090
FblI	GTMKAC	2 cut(s)	495, 867
Fnu4HI	GCNGC	9 cut(s)	510, 576, 579, 607, 878, 2025, 2339, 2634, 3875
FriOI	GRGCYC	3 cut(s)	78, 1607, 2811
Fsp4HI	GCNGC	9 cut(s)	510, 576, 579, 607, 878, 2025, 2339, 2634, 3875
FspBI	CTAG	4 cut(s)	446, 746, 1251, 2483
FspI	TGCGCA	1 cut(s)	1526
GlaI	GCGC	2 cut(s)	1526, 3905
GluI	GCNGC	9 cut(s)	510, 576, 579, 607, 878, 2025, 2339, 2634, 3875
GsaI	CCCAGC	3 cut(s)	75, 2198, 2895
GsuI	CTGGAG	2 cut(s)	2904, 3003
HapII	CCGG	9 cut(s)	29, 1256, 1906, 2535, 3116, 3425, 3646, 3748, 3851
HgaI	GACGC	4 cut(s)	134, 558, 2265, 3116
HhaI	GCGC	2 cut(s)	1527, 3906
Hin6I	GCGC	2 cut(s)	1525, 3904
HinP1I	GCGC	2 cut(s)	1525, 3904
HincII	GTYRAC	2 cut(s)	2242, 2564
HindII	GTYRAC	2 cut(s)	2242, 2564
HindIII	AAGCTT	1 cut(s)	3614
HpaII	CCGG	9 cut(s)	29, 1256, 1906, 2535, 3116, 3425, 3646, 3748, 3851
Hpy166II	GTNNAC	9 cut(s)	394, 496, 549, 868, 1379, 1756, 1830, 2242, 2564
Hpy8I	GTNNAC	9 cut(s)	394, 496, 549, 868, 1379, 1756, 1830, 2242, 2564
HspAI	GCGC	2 cut(s)	1525, 3904
Kpn2I	TCCGGA	1 cut(s)	3424
Ksp22I	TGATCA	3 cut(s)	424, 1900, 4090
LguI	GCTCTTC	1 cut(s)	3081
Lsp1109I	GCAGC	7 cut(s)	496, 587, 590, 889, 2011, 2350, 2620
MabI	ACCWGGT	1 cut(s)	3256
MaeI	CTAG	4 cut(s)	446, 746, 1251, 2483
MaeIII	GTNAC	4 cut(s)	1111, 1486, 1733, 2666
MfeI	CAATTG	3 cut(s)	2577, 2847, 3206
MflI	RGATCY	6 cut(s)	1138, 1841, 2440, 3427, 3473, 4008
MhlI	GDGCHC	7 cut(s)	78, 477, 1459, 1607, 2534, 2811, 3454
MlyI	GAGTC	5 cut(s)	340, 956, 1604, 2807, 3278
MmeI	TCCRAC	4 cut(s)	37, 1560, 1799, 3163
Mph1103I	ATGCAT	1 cut(s)	669
MroI	TCCGGA	1 cut(s)	3424
MroXI	GAANNNNTTC	4 cut(s)	209, 410, 1132, 3219
MslI	CAYNNNNRTG	2 cut(s)	2537, 3684
MspA1I	CMGCKG	2 cut(s)	3065, 3763
MspI	CCGG	9 cut(s)	29, 1256, 1906, 2535, 3116, 3425, 3646, 3748, 3851
MunI	CAATTG	3 cut(s)	2577, 2847, 3206
Mva1269I	GAATGC	1 cut(s)	3509
MvaI	CCWGG	7 cut(s)	907, 986, 1043, 2307, 2652, 3258, 3861
MvnI	CGCG	1 cut(s)	3291
NciI	CCSGG	3 cut(s)	30, 3646, 3748
NcoI	CCATGG	3 cut(s)	1738, 3807, 3948
NdeI	CATATG	3 cut(s)	669, 1521, 2055
NlaIV	GGNNCC	8 cut(s)	76, 1193, 2187, 2533, 2809, 3695, 3813, 3873
NmeAIII	GCCGAG	3 cut(s)	2188, 2390, 3533
NmuCI	GTSAC	4 cut(s)	1111, 1486, 1733, 2666
NsbI	TGCGCA	1 cut(s)	1526
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	4 cut(s)	160, 463, 979, 3254
PagI	TCATGA	4 cut(s)	699, 2791, 3679, 3703
PaqCI	CACCTGC	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	2650
PciI	ACATGT	2 cut(s)	156, 459
PciSI	GCTCTTC	1 cut(s)	3081
PctI	GAATGC	1 cut(s)	3509
PdmI	GAANNNNTTC	4 cut(s)	209, 410, 1132, 3219
PfeI	GAWTC	9 cut(s)	990, 1931, 2219, 2254, 2315, 2459, 3668, 3926, 4110
PflMI	CCANNNNNTGG	1 cut(s)	3766
PfoI	TCCNGGA	1 cut(s)	3644
PinAI	ACCGGT	1 cut(s)	1255
PkrI	GCNGC	9 cut(s)	511, 577, 580, 608, 879, 2026, 2340, 2635, 3876
PleI	GAGTC	5 cut(s)	340, 956, 1603, 2806, 3278
PpsI	GAGTC	5 cut(s)	340, 956, 1603, 2806, 3278
PpuMI	RGGWCCY	1 cut(s)	3694
PscI	ACATGT	2 cut(s)	156, 459
PshAI	GACNNNNGTC	1 cut(s)	1740
PshBI	ATTAAT	2 cut(s)	1644, 3557
Psp124BI	GAGCTC	1 cut(s)	1607
Psp1406I	AACGTT	4 cut(s)	409, 1381, 1723, 3217
Psp5II	RGGWCCY	1 cut(s)	3694
Psp6I	CCWGG	7 cut(s)	905, 984, 1041, 2305, 2650, 3256, 3859
PspEI	GGTNACC	1 cut(s)	1733
PspFI	CCCAGC	3 cut(s)	71, 2194, 2891
PspGI	CCWGG	7 cut(s)	905, 984, 1041, 2305, 2650, 3256, 3859
PspN4I	GGNNCC	8 cut(s)	76, 1193, 2187, 2533, 2809, 3695, 3813, 3873
PspOMI	GGGCCC	2 cut(s)	74, 2807
PspPI	GGNCC	8 cut(s)	74, 75, 217, 1235, 2211, 2807, 2808, 3694
PspPPI	RGGWCCY	1 cut(s)	3694
PsuI	RGATCY	6 cut(s)	1138, 1841, 2440, 3427, 3473, 4008
PvuII	CAGCTG	2 cut(s)	3065, 3763
RsaI	GTAC	5 cut(s)	980, 1387, 2272, 3255, 4104
RsaNI	GTAC	5 cut(s)	979, 1386, 2271, 3254, 4103
RseI	CAYNNNNRTG	2 cut(s)	2537, 3684
SacI	GAGCTC	1 cut(s)	1607
SapI	GCTCTTC	1 cut(s)	3081
SatI	GCNGC	9 cut(s)	510, 576, 579, 607, 878, 2025, 2339, 2634, 3875
Sau96I	GGNCC	8 cut(s)	74, 75, 217, 1235, 2211, 2807, 2808, 3694
SchI	GAGTC	5 cut(s)	340, 956, 1604, 2807, 3278
SduI	GDGCHC	7 cut(s)	78, 477, 1459, 1607, 2534, 2811, 3454
SexAI	ACCWGGT	1 cut(s)	3256
SfcI	CTRYAG	3 cut(s)	496, 2043, 2449
SinI	GGWCC	2 cut(s)	1235, 3694
SmiMI	CAYNNNNRTG	2 cut(s)	2537, 3684
SmlI	CTYRAG	2 cut(s)	194, 1942
SmoI	CTYRAG	2 cut(s)	194, 1942
SseBI	AGGCCT	1 cut(s)	2650
SsiI	CCGC	6 cut(s)	607, 1611, 1765, 2920, 3167, 3875
SspI	AATATT	2 cut(s)	2114, 3715
SspMI	CTAG	4 cut(s)	446, 746, 1251, 2483
SstI	GAGCTC	1 cut(s)	1607
StuI	AGGCCT	1 cut(s)	2650
StyI	CCWWGG	4 cut(s)	1738, 3546, 3807, 3948
TaqI	TCGA	3 cut(s)	333, 466, 2724
TatI	WGTACW	4 cut(s)	978, 1385, 2270, 4102
TauI	GCSGC	2 cut(s)	609, 3877
TfiI	GAWTC	9 cut(s)	990, 1931, 2219, 2254, 2315, 2459, 3668, 3926, 4110
TscAI	CASTG	7 cut(s)	505, 868, 1702, 2331, 2929, 3061, 3778
TseFI	GTSAC	4 cut(s)	1111, 1486, 1733, 2666
TseI	GCWGC	7 cut(s)	509, 575, 578, 877, 2024, 2338, 2633
Tsp45I	GTSAC	4 cut(s)	1111, 1486, 1733, 2666
TspGWI	ACGGA	6 cut(s)	1092, 1313, 1667, 2697, 3620, 4034
TspRI	CASTG	7 cut(s)	505, 868, 1702, 2331, 2929, 3061, 3778
Van91I	CCANNNNNTGG	1 cut(s)	3766
VpaK11BI	GGWCC	2 cut(s)	1235, 3694
VspI	ATTAAT	2 cut(s)	1644, 3557
XapI	RAATTY	9 cut(s)	1705, 2329, 2475, 3339, 3491, 3566, 3728, 3842, 4118
XbaI	TCTAGA	1 cut(s)	1250
XceI	RCATGY	4 cut(s)	160, 463, 979, 3254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3763
XmiI	GTMKAC	2 cut(s)	495, 867
XmnI	GAANNNNTTC	4 cut(s)	209, 410, 1132, 3219
XspI	CTAG	4 cut(s)	446, 746, 1251, 2483
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.