Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013862

Physical Location & Seq

Genomic Coordinates Forward (+)

37228752 .. 37237592

Gene Structure 8841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49790.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4233 bp

ATGAAGAGAATACGAGACGATGTGTACAGCGGTGGTGGTAGTGGTGGCGGCGCCGGCGGTGGTTCTTCTCAATTGAAACGTCCGCTTGCTTCTTCGCGCGGGGACTCAAATGGGCCGCCCCAAGTGCAAGGAGGAGGAGGAGGCGTGGTAGGTGGAGTAGCTAGCGTTGGAGTGGTTAGTGTCGGAGTAGCTGCTTCACAGAAACTGACGACAAATGATGCTCTTACATACCTCAAAGAAGTGAAAGACATGTTTCAAGACCAAAGAGAAAAGTATGAAATGTTTCTTGAGGTCATGAAGGATTTCAAGGCTCAAAGAACCGACACGACAGGTGTCATTGCAAGAGTAAAGGAATTGTTTAAAGGGCATACCAAGTTAATTTTGGGGTTTAATACCTTTTTGCCAAAGGGTTACGAGATAACTCTTGAGGAAGTGGAACCAAAAAAGACGGTTGAATTTGAAGAAGCAATCAGTTTTGTAAACAAGATCAAGAAACGTTTCCAAAATGATGAGCAAGTGTACAAGTCATTTTTAGACATACTGAATATGTATCGAAAGGAGCACAAGGACATAAATGAGGTTTACCAGGAGGTTGCTTCTCTATTTGATGACCAACCAGATCTGCTGGATGAGTTCACTAGATTTTTACCAGATACGTCAGCAACAACTTCAACTCATCAGGGGCAATATGGCCGCAATCCATATCCCCGTTTTAATGAGCGGAGCTCTGCTACACCTACTCTGCGGCCAATGCCTATTGACAAGCAACGTAGGCGGGATAAAATTACTTCTCATGGTGATCATGATATTAGTGTTGATCGTCCTGAGCTAGATGATGACAAAGGAATGATCAAAGTACTGAAGGAGCAGAGGAAACGTTTTCCTGAGAAGGAGAATAGGGATAGGAGAAATCGTGACCATGAAGATAGAGAAGTAGAGACTGATAACAACAGGGACTACAACTTGCAGCGTTTTCCAGAGAAAAGAAAATCTTCCAGGAAGGTTGATGGTTTTGGAGCGAATGCTAACTTTTCTCCTTATGATGACAAAGATACCTTAAAAGGCAAGTACAGCCAGGCATTCGGTTTCTTTGAGAAAGTCAAGGAGCGTCTGTGCAGCCAAGATGACTACCAGACATTTTTGAAGTTTCTTCATATTTATAGCAATGGGATTATCAAAAGGAATGATTTACAAAATATGGTGACTGATTTATTGAAGCATCCAGATCTTATGGAGGAATTTAATGAGTTCTTGGAGCGCTGTGAGAATATCGATGGATTCCTTGCTGGTGTAGTGAGAAAATCTGTGGGTAGTGATGGCCATTTATCACGATCAGTGAAGTTAGAGGACAAAGACAAGGAGCCAAAGCGTGAAATGGAGGGAGTTAAAGAGAAAGAACGATACAGGGAGAAGTATTGGGCGAAATCTATTCAAGAGCTTGACCTCTCTAACTGTGAACGTTGTACTCCAAGCTATCGCCTTCTTCCAGAAGATTATCCAATACCCTCAGCAAGCCAGAGATCAGAACTTGCTGCTCAGGTCTTGAATGACCATTGGGTATCTGTGACTTCAGGAAGTGAAGATTACTCTTTTAAACATATGCGCAGAAATCAGTATGAAGAAAGTCTTTTCCGTTGTGAAGATGATAGGTTTGAGTTGGATATGTTGTTGGAGTCAGTGAGCTCAACTTGTAAGCGAGCAGAGGAACTGTTGAACAGCATGAATGAAAATAAACTCAGTATGGAAACTCAAATTCATATCGAAGACCACTTTATTGCTCTGAACACAAGGTGCATTGAACGATTATATGGTGACCATGGTCTTGATGTGATGGACATTCTGCGGAAAAGTCCAACGCTTGCTCTACCTGTCATATTAACTCGCCTGAAACAGAAACAAGAGGAATGGACAAGGTGTAGAGTGGATTTCAATAAGGTCTGGGCTGATATATATGCCAAAAACCATTACAAATCACTCGATCACCGAAGCTTTTATTTCAAACAACAAGATTCAAAGAACTTGAGCAGCAAATATTTGGTGGCTGAGATCAAGGAATTGAAAGATAAAAAACAGATAGAGGACGATATTCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATCTGGAGTATGAATACCTTGATGTCAGCATTCACGAAGACTTGTATAAACTTGTTGAATATTCATCTGAAGAGCTTAGCTCAACTAAAGAACAGTTGAGTAAGACTATGAGACTTTATACTACCTTTTTGGAGCCAATGCTGGGTATTCCTTCTCGGCCTCATGGTTCAGAGGATGATGAAGATGTGGACAAAACTAGGAAGTTGGCTATGACTTGCAGTGCATCAAGCAATGGAGAAAGTGATGGAAGTCCTGGTGGTGACACTACCATGGTAAATTTTAAGCAGCCAAAATCTGGGGGTAATGAAGATGAAAATGCTTTAGCAGAAGTGGCAAGTTCTAGGACTACGTTGGCTAATGGGGATACCTTGGCAAAAGAAGATGGCAGTTGCGATGCAGATAATCCCGGTAGGGACGATTCAATCTGTAATAACATCCGGGTAGAGAAAGAACAGAAGAATATGGGTATCTCTGATAAAATGCATGGGCCAAGTAAACCGATTGTCTCCATTGATCGAGTAGGCAATTCCAACGCATCATTTGCAATTGGAGGAGAAAATAACCATGGGAGAATCAGTATGGAAGTGACGTCAGGGTCTGTTGCAACTACCTCAAGACCTTACGACTCCATTAGTGAAAATGAGCAATCAAAGAAAACTATTGCTGATACTGCTGTTCCTTCATCGGAGGGTGGTGATACCGCAAAACCTGCTTCATTTGGTATTGGGGTGTTTACAGAAAGCACTAAAGTCAACAGTCGGCATGAGGAGTCTATTGGGCCCTCTAAAATTGAGAAGGAAGAAGGTGAATTATCACCTATTGGTGATTATGGGGAGGATAACTTCGTTGTATCTGGAGATGCGGTGCAGGCTTTGCCTAAGGGAAACCATGGTGTTGAAAGGCAATATCAGTCTGGAAACGGGGAAGAAATTTGCCCTCAGGATGCTGGGGAAAATGATGCAGATGCTGATGATGAGAACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCCGGCAGTGAGACAGCTGGTGATGAGTGTTCCCGAGAAGAGCATGGAGAGGAGGATGCTGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAGGCTGAAGGGATGGCTGATGGGCACCTTGTTGGGGATAGCTGTTCCTTGCAATTGCCAGAACGTTTTCTTATGTCTGTGAAGCCTCTTGCAAAGCATGTCTCGGAACCTTTAGTTGATGACAAGAAAGACTGTCGTGTGTTTTATGGAAATGATAACTTTTATGTGCTTTATAGGCTTCATCAAATTTTATACGAGAGGATTTTAGCTGCAAAAACAAATTCAGTAGGAGCAGAAACTAAGTGGAGAACTTCCAAGGATGGCAACCCTCCAGATCTTTATGGCAGATTTATGAGTGCACTGTACAATTTGCTTGATGGATCTGCTGACAATGCAAAATTTGAGGATGAGTGCCGAGCTATTATTGGAAATCAGTCCTACGTCTTATTCACATTGGACAAGTTAATATATAAATTTGTTAAACAGCTTCAAGCGGTTGCAACTGATGAGATGGACAATAAGCTTCTTCATTTATATGAATATGAAAAGTCCAGGAAAAAGGGGAAGCTAATTGATTCTGTCTATTTTGAAAACACACGTGTTCTTGTGCATGAGGAGAACATTTACAGATTGGAATTTCACTCTGCACCCTCCCGTCTGTCCATCCAGCTGATGGACAGTGTGAGTGAAAAGCCTGAGGCGTCGGCAGTTTCTATGGAACCTAACTTTTCTTCTTATCTGCACAATGATTTCCTGTCACTTTATCCTGGCAAAAAGGAGCCACACGGAATTACCCTGCAGAGAAACAAGCGCAAATTTGCAGGGCAAGATGAATCCTCTGCCTTTTCCAATGCCATGGAGGGTGTTCAATTAGTCAATGGGTTGGAGTGTAAGATAGCTTGCAACTCATCCAAGATCTCTTATGTTCTTGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAATGTCATCAGAGTCCAGATCACCATATTGTGATCAGACGAGGGTACAGCGGTTCCACAAATTCTTGTCCGTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1411

Amino Acids

159.53

Weight (kDa)

5.26

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	90 - 134	3.7e-17	Paired amphipathic helix repeat
PAH	PF02671	172 - 216	4.4e-18	Paired amphipathic helix repeat
PAH	PF02671	376 - 418	2.5e-11	Paired amphipathic helix repeat
Sin3_corepress	PF08295	486 - 578	1.2e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1129 - 1377	2.8e-46	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10250
fragaria_vesca	FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790
malus_domestica	MD09G1041300.v1.1 MD17G1042600.v1.1
pyrus_communis	pycom111g03230 pycom17g03820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2725
AatII	GACGTC	1 cut(s)	2723
Acc16I	TGCGCA	1 cut(s)	1604
Acc36I	ACCTGC	1 cut(s)	2848
AccB1I	GGYRCC	2 cut(s)	50, 3267
AccB7I	CCANNNNNTGG	2 cut(s)	2426, 3856
AccBSI	CCGCTC	1 cut(s)	721
AccII	CGCG	2 cut(s)	97, 99
AclI	AACGTT	4 cut(s)	496, 877, 1459, 3307
AclWI	GGATC	1 cut(s)	3571
AcoI	YGGCCR	3 cut(s)	691, 746, 1318
AcuI	CTGAAG	5 cut(s)	881, 1554, 2220, 3147, 3270
AcvI	CACGTG	1 cut(s)	3782
AcyI	GRCGYC	3 cut(s)	51, 2720, 3884
AdeI	CACNNNGTG	1 cut(s)	1791
AfaI	GTAC	7 cut(s)	26, 521, 858, 1070, 1465, 3548, 4200
AfeI	AGCGCT	1 cut(s)	1259
AfiI	CCNNNNNNNGG	4 cut(s)	2273, 2426, 3277, 3856
AflIII	ACRYGT	3 cut(s)	249, 3779, 3781
AjnI	CCWGG	6 cut(s)	585, 995, 1074, 2383, 3734, 3949
Alw21I	GWGCWC	4 cut(s)	564, 728, 1685, 3544
Alw26I	GTCTC	7 cut(s)	9, 932, 2236, 2641, 3148, 3149, 3349
Alw44I	GTGCAC	1 cut(s)	3540
AlwI	GGATC	1 cut(s)	3571
AlwNI	CAGNNNCTG	3 cut(s)	205, 2729, 3098
Ama87I	CYCGRG	1 cut(s)	3177
Aor51HI	AGCGCT	1 cut(s)	1259
AoxI	GGCC	7 cut(s)	113, 691, 746, 1318, 2288, 2618, 2909
ApaI	GGGCCC	1 cut(s)	2913
ApaLI	GTGCAC	1 cut(s)	3540
ApeKI	GCWGC	8 cut(s)	191, 967, 1116, 1532, 2025, 2102, 2416, 3452
Asp700I	GAANNNNTTC	5 cut(s)	282, 302, 497, 991, 3309
AspLEI	GCGC	5 cut(s)	53, 99, 1260, 1605, 3996
AspS9I	GGNCC	4 cut(s)	113, 2618, 2909, 2910
AsuC2I	CCSGG	2 cut(s)	2538, 2570
AsuNHI	GCTAGC	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	3177
AxyI	CCTNAGG	3 cut(s)	3009, 3069, 3879
BaeGI	GKGCMC	3 cut(s)	2913, 3270, 3544
BaeI	ACNNNNGTAYC	4 cut(s)	2790, 2823, 4190, 4223
BalI	TGGCCA	1 cut(s)	1320
BanI	GGYRCC	2 cut(s)	50, 3267
BanII	GRGCYC	3 cut(s)	728, 1685, 2913
BbrPI	CACGTG	1 cut(s)	3782
BbsI	GAAGAC	2 cut(s)	1770, 2175
Bbv12I	GWGCWC	4 cut(s)	564, 728, 1685, 3544
BbvCI	CCTCAGC	1 cut(s)	1507
BbvI	GCAGC	8 cut(s)	178, 979, 1128, 1519, 2037, 2089, 2428, 3439
BciT130I	CCWGG	6 cut(s)	587, 997, 1076, 2385, 3736, 3951
BciVI	GTATCC	1 cut(s)	2488
BclI	TGATCA	3 cut(s)	799, 849, 4186
BcnI	CCSGG	2 cut(s)	2538, 2570
BcoDI	GTCTC	7 cut(s)	9, 932, 2236, 2641, 3148, 3149, 3349
BfaI	CTAG	5 cut(s)	162, 639, 830, 2328, 2472
BfmI	CTRYAG	2 cut(s)	2121, 3980
BfoI	RGCGCY	2 cut(s)	54, 1261
BfuAI	ACCTGC	1 cut(s)	2848
BfuI	GTATCC	1 cut(s)	2488
BglII	AGATCT	4 cut(s)	619, 1225, 3517, 4098
BlpI	GCTNAGC	1 cut(s)	2207
BmcAI	AGTACT	1 cut(s)	858
Bme1390I	CCNGG	8 cut(s)	587, 997, 1076, 2385, 2538, 2570, 3736, 3951
BmeT110I	CYCGRG	1 cut(s)	3177
BmgT120I	GGNCC	4 cut(s)	113, 2618, 2909, 2910
BmrFI	CCNGG	8 cut(s)	587, 997, 1076, 2385, 2538, 2570, 3736, 3951
BmtI	GCTAGC	1 cut(s)	165
BoxI	GACNNNNGTC	2 cut(s)	332, 1818
BpiI	GAAGAC	2 cut(s)	1770, 2175
BplI	GAGNNNNNCTC	4 cut(s)	710, 742, 2195, 2227
BpmI	CTGGAG	3 cut(s)	2156, 3006, 3498
Bpu10I	CCTNAGC	3 cut(s)	825, 1507, 1536
Bpu1102I	GCTNAGC	1 cut(s)	2207
BpuEI	CTTGAG	4 cut(s)	308, 446, 2041, 2728
BpuMI	CCSGG	2 cut(s)	2538, 2570
Bsa29I	ATCGAT	1 cut(s)	1272
BsaAI	YACGTR	1 cut(s)	3782
BsaHI	GRCGYC	3 cut(s)	51, 2720, 3884
BsaJI	CCNNGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
Bsc4I	CCNNNNNNNGG	4 cut(s)	2273, 2426, 3277, 3856
Bse118I	RCCGGY	1 cut(s)	53
Bse21I	CCTNAGG	3 cut(s)	3009, 3069, 3879
Bse3DI	GCAATG	3 cut(s)	336, 1171, 2368
BseBI	CCWGG	6 cut(s)	587, 997, 1076, 2385, 3736, 3951
BseCI	ATCGAT	1 cut(s)	1272
BseDI	CCNNGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
BseLI	CCNNNNNNNGG	4 cut(s)	2273, 2426, 3277, 3856
BseMI	GCAATG	3 cut(s)	336, 1171, 2368
BseMII	CTCAG	9 cut(s)	816, 876, 1521, 1550, 1750, 2034, 3083, 3222, 3870
BseRI	GAGGAG	7 cut(s)	147, 150, 153, 2697, 2912, 3209, 3812
BseSI	GKGCMC	3 cut(s)	2913, 3270, 3544
BseXI	GCAGC	8 cut(s)	178, 979, 1128, 1519, 2037, 2089, 2428, 3439
BseYI	CCCAGC	2 cut(s)	2272, 3077
BsgI	GTGCAG	4 cut(s)	1135, 3017, 3813, 3908
Bsh1236I	CGCG	2 cut(s)	97, 99
BshFI	GGCC	7 cut(s)	115, 693, 748, 1320, 2290, 2620, 2911
BshNI	GGYRCC	2 cut(s)	50, 3267
BshVI	ATCGAT	1 cut(s)	1272
BsiHKAI	GWGCWC	4 cut(s)	564, 728, 1685, 3544
BsiHKCI	CYCGRG	1 cut(s)	3177
BsiSI	CCGG	4 cut(s)	54, 2538, 2569, 3147
BslFI	GGGAC	3 cut(s)	116, 968, 2558
BslI	CCNNNNNNNGG	4 cut(s)	2273, 2426, 3277, 3856
BsmAI	GTCTC	7 cut(s)	9, 932, 2236, 2641, 3148, 3149, 3349
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	116, 968, 2558
BsmI	GAATGC	3 cut(s)	1027, 1079, 2160
BsnI	GGCC	7 cut(s)	115, 693, 748, 1320, 2290, 2620, 2911
BsoBI	CYCGRG	1 cut(s)	3177
Bsp120I	GGGCCC	1 cut(s)	2909
Bsp1286I	GDGCHC	6 cut(s)	564, 728, 1685, 2913, 3270, 3544
Bsp1407I	TGTACA	3 cut(s)	24, 519, 3546
Bsp1720I	GCTNAGC	1 cut(s)	2207
Bsp19I	CCATGG	5 cut(s)	1816, 2400, 2695, 3019, 4038
BspANI	GGCC	7 cut(s)	115, 693, 748, 1320, 2290, 2620, 2911
BspCNI	CTCAG	9 cut(s)	817, 877, 1520, 1549, 1749, 2035, 3082, 3223, 3871
BspDI	ATCGAT	1 cut(s)	1272
BspFNI	CGCG	2 cut(s)	97, 99
BspHI	TCATGA	2 cut(s)	294, 802
BspMAI	CTGCAG	1 cut(s)	3984
BspMI	ACCTGC	1 cut(s)	2848
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	1 cut(s)	3571
BspQI	GCTCTTC	2 cut(s)	2196, 3177
BspT107I	GGYRCC	2 cut(s)	50, 3267
BsrBI	CCGCTC	1 cut(s)	721
BsrDI	GCAATG	3 cut(s)	336, 1171, 2368
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	3 cut(s)	24, 519, 3546
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
BssNI	GRCGYC	3 cut(s)	51, 2720, 3884
BssT1I	CCWWGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
Bst2UI	CCWGG	6 cut(s)	587, 997, 1076, 2385, 3736, 3951
Bst4CI	ACNGT	9 cut(s)	451, 1454, 1710, 2226, 2888, 3113, 3377, 3546, 3863
Bst6I	CTCTTC	2 cut(s)	2196, 3177
BstACI	GRCGYC	3 cut(s)	51, 2720, 3884
BstAPI	GCANNNNNTGC	3 cut(s)	2672, 2840, 3004
BstAUI	TGTACA	3 cut(s)	24, 519, 3546
BstBAI	YACGTR	1 cut(s)	3782
BstC8I	GCNNGC	8 cut(s)	55, 87, 163, 1513, 1698, 1860, 3000, 4084
BstDSI	CCRYGG	5 cut(s)	1816, 2400, 2695, 3019, 4038
BstEII	GGTNACC	1 cut(s)	1811
BstFNI	CGCG	2 cut(s)	97, 99
BstH2I	RGCGCY	2 cut(s)	54, 1261
BstHHI	GCGC	5 cut(s)	53, 99, 1260, 1605, 3996
BstMAI	GTCTC	7 cut(s)	9, 932, 2236, 2641, 3148, 3149, 3349
BstNI	CCWGG	6 cut(s)	587, 997, 1076, 2385, 3736, 3951
BstNSI	RCATGY	2 cut(s)	253, 3344
BstPAI	GACNNNNGTC	2 cut(s)	332, 1818
BstPI	GGTNACC	1 cut(s)	1811
BstSCI	CCNGG	8 cut(s)	585, 995, 1074, 2383, 2536, 2568, 3734, 3949
BstSFI	CTRYAG	2 cut(s)	2121, 3980
BstSLI	GKGCMC	3 cut(s)	2913, 3270, 3544
BstUI	CGCG	2 cut(s)	97, 99
BstV1I	GCAGC	8 cut(s)	178, 979, 1128, 1519, 2037, 2089, 2428, 3439
BstV2I	GAAGAC	2 cut(s)	1770, 2175
BstX2I	RGATCY	5 cut(s)	619, 1225, 3517, 3563, 4098
BstXI	CCANNNNNNTGG	1 cut(s)	4039
BstYI	RGATCY	5 cut(s)	619, 1225, 3517, 3563, 4098
Bsu15I	ATCGAT	1 cut(s)	1272
Bsu36I	CCTNAGG	3 cut(s)	3009, 3069, 3879
BsuI	GTATCC	1 cut(s)	2488
BsuRI	GGCC	7 cut(s)	115, 693, 748, 1320, 2290, 2620, 2911
BsuTUI	ATCGAT	1 cut(s)	1272
BtgI	CCRYGG	5 cut(s)	1816, 2400, 2695, 3019, 4038
BtgZI	GCGATG	1 cut(s)	2538
BtsI	GCAGTG	2 cut(s)	2356, 3157
BtsIMutI	CAGTG	7 cut(s)	1341, 1683, 2356, 3118, 3157, 3542, 3868
BveI	ACCTGC	1 cut(s)	2848
Cac8I	GCNNGC	8 cut(s)	55, 87, 163, 1513, 1698, 1860, 3000, 4084
CaiI	CAGNNNCTG	3 cut(s)	205, 2729, 3098
CciI	TCATGA	2 cut(s)	294, 802
CfoI	GCGC	5 cut(s)	53, 99, 1260, 1605, 3996
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	4 cut(s)	113, 2618, 2909, 2910
ClaI	ATCGAT	1 cut(s)	1272
CseI	GACGC	2 cut(s)	1097, 3873
Csp6I	GTAC	7 cut(s)	25, 520, 857, 1069, 1464, 3547, 4199
CviQI	GTAC	7 cut(s)	25, 520, 857, 1069, 1464, 3547, 4199
DinI	GGCGCC	1 cut(s)	52
DraI	TTTAAA	2 cut(s)	361, 1594
DraIII	CACNNNGTG	1 cut(s)	1791
DrdI	GACNNNNNNGTC	1 cut(s)	2725
DseDI	GACNNNNNNGTC	1 cut(s)	2725
EaeI	YGGCCR	3 cut(s)	691, 746, 1318
Eam1104I	CTCTTC	2 cut(s)	2196, 3177
EarI	CTCTTC	2 cut(s)	2196, 3177
Ecl136II	GAGCTC	2 cut(s)	726, 1683
Eco130I	CCWWGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
Eco24I	GRGCYC	3 cut(s)	728, 1685, 2913
Eco47III	AGCGCT	1 cut(s)	1259
Eco53kI	GAGCTC	2 cut(s)	726, 1683
Eco57I	CTGAAG	5 cut(s)	881, 1554, 2220, 3147, 3270
Eco72I	CACGTG	1 cut(s)	3782
Eco81I	CCTNAGG	3 cut(s)	3009, 3069, 3879
Eco88I	CYCGRG	1 cut(s)	3177
Eco91I	GGTNACC	1 cut(s)	1811
EcoICRI	GAGCTC	2 cut(s)	726, 1683
EcoO109I	RGGNCCY	1 cut(s)	2910
EcoO65I	GGTNACC	1 cut(s)	1811
EcoRII	CCWGG	6 cut(s)	585, 995, 1074, 2383, 3734, 3949
EcoT14I	CCWWGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
EcoT22I	ATGCAT	1 cut(s)	2616
EcoT38I	GRGCYC	3 cut(s)	728, 1685, 2913
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
Esp3I	CGTCTC	1 cut(s)	9
FalI	AAGNNNNNCTT	4 cut(s)	976, 1008, 1611, 1643
FaqI	GGGAC	3 cut(s)	116, 968, 2558
FauI	CCCGC	2 cut(s)	92, 768
FauNDI	CATATG	1 cut(s)	1599
FbaI	TGATCA	3 cut(s)	799, 849, 4186
FriOI	GRGCYC	3 cut(s)	728, 1685, 2913
FspBI	CTAG	5 cut(s)	162, 639, 830, 2328, 2472
FspI	TGCGCA	1 cut(s)	1604
GlaI	GCGC	5 cut(s)	52, 98, 1259, 1604, 3995
GsaI	CCCAGC	2 cut(s)	2276, 3081
GsuI	CTGGAG	3 cut(s)	2156, 3006, 3498
HaeII	RGCGCY	2 cut(s)	54, 1261
HaeIII	GGCC	7 cut(s)	115, 693, 748, 1320, 2290, 2620, 2911
HapII	CCGG	4 cut(s)	54, 2538, 2569, 3147
HgaI	GACGC	2 cut(s)	1097, 3873
HhaI	GCGC	5 cut(s)	53, 99, 1260, 1605, 3996
Hin1I	GRCGYC	3 cut(s)	51, 2720, 3884
Hin6I	GCGC	5 cut(s)	51, 97, 1258, 1603, 3994
HinP1I	GCGC	5 cut(s)	51, 97, 1258, 1603, 3994
HincII	GTYRAC	1 cut(s)	2884
HindII	GTYRAC	1 cut(s)	2884
HindIII	AAGCTT	2 cut(s)	1987, 3704
HpaII	CCGG	4 cut(s)	54, 2538, 2569, 3147
Hpy99I	CGWCG	1 cut(s)	3889
HpyCH4III	ACNGT	9 cut(s)	451, 1454, 1710, 2226, 2888, 3113, 3377, 3546, 3863
Hsp92I	GRCGYC	3 cut(s)	51, 2720, 3884
HspAI	GCGC	5 cut(s)	51, 97, 1258, 1603, 3994
KasI	GGCGCC	1 cut(s)	50
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	3 cut(s)	799, 849, 4186
LguI	GCTCTTC	2 cut(s)	2196, 3177
Lsp1109I	GCAGC	8 cut(s)	178, 979, 1128, 1519, 2037, 2089, 2428, 3439
MaeI	CTAG	5 cut(s)	162, 639, 830, 2328, 2472
MaeIII	GTNAC	8 cut(s)	410, 914, 1201, 1564, 1811, 2390, 2716, 3939
MbiI	CCGCTC	1 cut(s)	721
MfeI	CAATTG	3 cut(s)	71, 2676, 3296
MflI	RGATCY	5 cut(s)	619, 1225, 3517, 3563, 4098
MhlI	GDGCHC	6 cut(s)	564, 728, 1685, 2913, 3270, 3544
MlsI	TGGCCA	1 cut(s)	1320
MluNI	TGGCCA	1 cut(s)	1320
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	5 cut(s)	98, 1682, 2750, 2909, 4175
MmeI	TCCRAC	7 cut(s)	148, 163, 1638, 1650, 1877, 2685, 4047
Mox20I	TGGCCA	1 cut(s)	1320
Mph1103I	ATGCAT	1 cut(s)	2616
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	5 cut(s)	282, 302, 497, 991, 3309
MscI	TGGCCA	1 cut(s)	1320
MslI	CAYNNNNRTG	3 cut(s)	2399, 3213, 3717
Msp20I	TGGCCA	1 cut(s)	1320
MspA1I	CMGCKG	4 cut(s)	30, 3161, 3853, 4204
MspI	CCGG	4 cut(s)	54, 2538, 2569, 3147
MspR9I	CCNGG	8 cut(s)	587, 997, 1076, 2385, 2538, 2570, 3736, 3951
MunI	CAATTG	3 cut(s)	71, 2676, 3296
Mva1269I	GAATGC	3 cut(s)	1027, 1079, 2160
MvaI	CCWGG	6 cut(s)	587, 997, 1076, 2385, 3736, 3951
MvnI	CGCG	2 cut(s)	97, 99
NaeI	GCCGGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	2 cut(s)	2538, 2570
NcoI	CCATGG	5 cut(s)	1816, 2400, 2695, 3019, 4038
NdeI	CATATG	1 cut(s)	1599
NgoMIV	GCCGGC	1 cut(s)	53
NheI	GCTAGC	1 cut(s)	161
NmeAIII	GCCGAG	2 cut(s)	2266, 3623
NmuCI	GTSAC	7 cut(s)	914, 1201, 1564, 1811, 2390, 2716, 3939
NsbI	TGCGCA	1 cut(s)	1604
NsiI	ATGCAT	1 cut(s)	2616
NspI	RCATGY	2 cut(s)	253, 3344
PagI	TCATGA	2 cut(s)	294, 802
PciI	ACATGT	1 cut(s)	249
PciSI	GCTCTTC	2 cut(s)	2196, 3177
PctI	GAATGC	3 cut(s)	1027, 1079, 2160
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	5 cut(s)	282, 302, 497, 991, 3309
PfeI	GAWTC	6 cut(s)	1278, 2009, 2549, 2703, 3758, 4016
PflMI	CCANNNNNTGG	2 cut(s)	2426, 3856
PfoI	TCCNGGA	2 cut(s)	995, 3734
PleI	GAGTC	5 cut(s)	98, 1681, 2750, 2908, 4174
PluTI	GGCGCC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	3782
PmlI	CACGTG	1 cut(s)	3782
PpsI	GAGTC	5 cut(s)	98, 1681, 2750, 2908, 4174
Ppu21I	YACGTR	1 cut(s)	3782
PscI	ACATGT	1 cut(s)	249
PshAI	GACNNNNGTC	2 cut(s)	332, 1818
Psp124BI	GAGCTC	2 cut(s)	728, 1685
Psp1406I	AACGTT	4 cut(s)	496, 877, 1459, 3307
Psp6I	CCWGG	6 cut(s)	585, 995, 1074, 2383, 3734, 3949
PspCI	CACGTG	1 cut(s)	3782
PspEI	GGTNACC	1 cut(s)	1811
PspFI	CCCAGC	2 cut(s)	2272, 3077
PspGI	CCWGG	6 cut(s)	585, 995, 1074, 2383, 3734, 3949
PspOMI	GGGCCC	1 cut(s)	2909
PspPI	GGNCC	4 cut(s)	113, 2618, 2909, 2910
PstI	CTGCAG	1 cut(s)	3984
PstNI	CAGNNNCTG	3 cut(s)	205, 2729, 3098
PsuI	RGATCY	5 cut(s)	619, 1225, 3517, 3563, 4098
PvuII	CAGCTG	2 cut(s)	3161, 3853
RsaI	GTAC	7 cut(s)	26, 521, 858, 1070, 1465, 3548, 4200
RsaNI	GTAC	7 cut(s)	25, 520, 857, 1069, 1464, 3547, 4199
RseI	CAYNNNNRTG	3 cut(s)	2399, 3213, 3717
SacI	GAGCTC	2 cut(s)	728, 1685
SapI	GCTCTTC	2 cut(s)	2196, 3177
Sau96I	GGNCC	4 cut(s)	113, 2618, 2909, 2910
ScaI	AGTACT	1 cut(s)	858
SchI	GAGTC	5 cut(s)	98, 1682, 2750, 2909, 4175
ScrFI	CCNGG	8 cut(s)	587, 997, 1076, 2385, 2538, 2570, 3736, 3951
SduI	GDGCHC	6 cut(s)	564, 728, 1685, 2913, 3270, 3544
SfcI	CTRYAG	2 cut(s)	2121, 3980
SfoI	GGCGCC	1 cut(s)	52
SgrAI	CRCCGGYG	1 cut(s)	53
SmiMI	CAYNNNNRTG	3 cut(s)	2399, 3213, 3717
SmlI	CTYRAG	4 cut(s)	287, 425, 2020, 2743
SmoI	CTYRAG	4 cut(s)	287, 425, 2020, 2743
SspDI	GGCGCC	1 cut(s)	50
SspI	AATATT	2 cut(s)	2033, 2192
SspMI	CTAG	5 cut(s)	162, 639, 830, 2328, 2472
SstI	GAGCTC	2 cut(s)	728, 1685
StyD4I	CCNGG	8 cut(s)	585, 995, 1074, 2383, 2536, 2568, 3734, 3949
StyI	CCWWGG	7 cut(s)	1816, 2400, 2499, 2695, 3019, 3498, 4038
TaaI	ACNGT	9 cut(s)	451, 1454, 1710, 2226, 2888, 3113, 3377, 3546, 3863
TaqI	TCGA	5 cut(s)	553, 1272, 1761, 1977, 2647
TatI	WGTACW	6 cut(s)	24, 519, 856, 1068, 1463, 3546
TauI	GCSGC	4 cut(s)	51, 118, 696, 748
TfiI	GAWTC	6 cut(s)	1278, 2009, 2549, 2703, 3758, 4016
TscAI	CASTG	7 cut(s)	1341, 1683, 2356, 3118, 3157, 3549, 3868
TseFI	GTSAC	7 cut(s)	914, 1201, 1564, 1811, 2390, 2716, 3939
TseI	GCWGC	8 cut(s)	191, 967, 1116, 1532, 2025, 2102, 2416, 3452
Tsp45I	GTSAC	7 cut(s)	914, 1201, 1564, 1811, 2390, 2716, 3939
TspGWI	ACGGA	4 cut(s)	1622, 3984, 4124, 4213
TspRI	CASTG	7 cut(s)	1341, 1683, 2356, 3118, 3157, 3549, 3868
Van91I	CCANNNNNTGG	2 cut(s)	2426, 3856
VneI	GTGCAC	1 cut(s)	3540
XceI	RCATGY	2 cut(s)	253, 3344
XcmI	CCANNNNNNNNNTGG	2 cut(s)	379, 3853
XmnI	GAANNNNTTC	5 cut(s)	282, 302, 497, 991, 3309
XspI	CTAG	5 cut(s)	162, 639, 830, 2328, 2472
ZraI	GACGTC	1 cut(s)	2721
ZrmI	AGTACT	1 cut(s)	858
Zsp2I	ATGCAT	1 cut(s)	2616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.