Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013862

Physical Location & Seq

Genomic Coordinates Reverse (-)

3112748 .. 3120336

Gene Structure 7589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1042600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3762 bp

ATGTTTAATTTTATCCTAATCACAAGTAAACGTTTCCAAAATGATGATCATGTCTATAAATCATTCCTGGACATACTAAACATGTATCGAAAGGAGCACAAGGATATAAATGAAGTTTACAGTGAGGTTGCTGCTCTTTTTGATGAGCATCCAGATTTACTTGATGAGTTCACCAGATTTTTACCAGATGCGTCAGCAGCAGCTTCAGCACATCAAGCTCAATATGGCCACAATTCATTTCCCCGTTTCAATGAGCGAAGCTCTGCTACACCCACATTTCGGCCAATGCATATGGAGAAGCAACGTAGGAGGGATAGGATCATGACACCCCATGCTGATCGTGATCTTAGTGTTGATCGTCCTGAGCTCGACGATGACAAAGGAATGGTGAAAGTTCCGAAGGAGCACAGAAAGCGTAGTGAAAAGGAGAATAGGGATAGAAGAAATCGGGACGATGATGATAGAGAATTAGAGAATGATAACAATAGGGACTACAAATTACAGCGTTTTCCTGATAAAAGAAAACCCTCCAGGAAGGTTGAAGGTTTTGGTGTGACTGCTAACTTCGCTCCTTATGATGACAAAGACTCCTTAAAGAGCATGTACAGCCAGGGATTCATTTTCTGTGGGAAGGTGAAGGAGAGGTTGTGTAGTCAAGATGACTACGAGGCATTTTTGAAGTTGCTTAACATATATAGCAACGGAATTATTAAAAGGAATGATCTGCAAGGTTTGGTGACTGATTTATTGGGAAAGTATTCAGATCTTATGGAGGAGTTTAATGATTTTTTGGAGCGTTGCGAGAATATAGATGGGTTCCTTGCTGGTGTTATGAGTAGAAAATCTCTGAGTAGTGATGGTCCTGTTCCTTCATCTAGATCCCTGAAGGTAGAGGACAAAAATAAAGAGCCAAAGCGTGAAATGGAGGGAGCTAAAGAAAAGGAAAGATACAGGGAGAAGTATTGGGCAAAATCTATTCAAGAGCTTGACCTCTCTAACTGTGAACGTTGTACTCCAAGCTATCGGCTTCTGCCTGAAGACTATCCAATACCTTCAGCAAGCCAGAGATCAGAACTTGGTGCTCAGGTTCTGAATGACCATTGGGTATCTGTGACTTCAGGAAGTGAAGATTACTCTTTTAAACATATGCGCAGAAATCAGTATGAAGAAAGTCTGTTCAGATGTGAGGATGATAGGTTTGAGTTGGATATGTTGTTAGAGTCGGTGAGCTCAACTGCTAAGCGAGCAGAGGAACTCTTGAACAGCATCAATGAAAATAAGATCAGCATGGAAACTGTAATCCGTATTGAAGACCACTTCACTGCTTTAAACTTAAGGTGCATTGAACGTTTATATGGTGACCATGGTCTTGATGTGATGGACATACTGCGGAAAAATCCAACTCTGGCCTTGCCTGTTGTATTAACTCGCCTGAAGCAGAAACAAGATGAATGGACAAGGTGTAGATCCGATTTTAACAAGGTTTGGGCAGATATATATGCCAAAAACCATTACAAATCACTTGATCACCGGAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGTAGCAAATCTTTGGTGGCTGAGATCAAAGAATTGAAAGAGAAAAAGCAGATAGAGGATGATATCCTTCTGGCTGTTGCTGCTGGAAACAGGCAATCTATAGTTCCACATATGGAGTATGAATACTTAGATATCAGCTTACATGAAGACTTGTATAAACTTGTCCAATATTCATGTGAAGAGGTTTTCTCAACGAAAGAACAATTAAATAAGGCTATGAGACTTTACACTACCATTTTGGAGCCAATGCTGGGTGTTTCTTCTCGACCCAACGATTCAGAGGATGATGAAGATGTCGACAAAAGTAGGAATCAGGCTAAGAATTGTATTGCTTCAAGCATAGGAGAAAGCGATGGAAGTCCTGGTGGCGATTCTGCCCCAGTGAATCTTAAGCAGCCCAAATCTGTGTGTAATGAAGAAGGAAATGCTTTAGCAGAAGTTGAAAGTTTGGCTAACGGGGATAACTCAGCTAAAGAAGATGGAAGTCGTGATGCACATCCTGTCTCTAGGAAAGATTCCACATCTGAGAAACTTCAACTAGAGAGAGACCAGAAAAATACGGATGTCCCTAAGAAAAGGTTTCTGGCCACCAACACGGACAATGCATGGCCGTCCAGTCAACCATCACATCCAATTGGAGCAGATAATAATCATGGTAGAACGAGCTTGGAAGTGCTATCAGGGTGTGTTGCAACCACATCAAGGGCTGGTGCCTCTATTAGTGGCAATGACCCTTTACAGCAAGGAAATGCTGATGCTGTTCCGTCATCAGAGGGTGGTGATATTGCAAAACCTGCTTTAATTGCTAATGGAGTATTTCCAGAAAGCACTAAAGTTAAAAGTCATCATGAAGAGTCTCTTGGGCCCTCCAAAATTGAAAAGGAAGAGGGGGAATTATCACCAATTGCTGACTTTGGGGAGGATAACTTTGTTGTCCCTGGAGATGCTGGGGTGCAAGCTAAGGCAAACCGCAGTATTGAAAGTAGACTGTTTCAGTCTGGGAATAGGGAAGACATTAGTGGTCAGGAAGCTGGAGACAATGATGCAGATGCAGATGATGAAAACAGTGAAAATGTTTCCGAGGCTGGTGAAGATGTCTCTGGCAGTGAGACAGCTGGTGATGAATGTTCCCGAGAAGAGCAAGGTGATGATGAAGATGCTGAACAAGATGACATTGATGGTAAGGCTGAGAGCGAAGGTGAGGCTGAAGGGATGGCTGATGGACATCTTGTTGGAGGAGATGGAATGTGTTCGCCGTTGTCCGAATGTTTTCTTTTATCTGTGAAACCTCTTGCGAAGCATGTACCAGGTTCTTTACTTGAAGAAAGGAAAGACTCTCGTGTTTTCTATGGGAATGATAATTTCTATGTGCTTTATAGGCTTCATCAAATTCTATATGAAAGGATTTTATCTGCAAAAACAAGTTCCACAGGTGCAGAAATGAAATGGAGAACTTCAAAGGATGGCAGCTCTCCGGATCTGTATGACAGATTTATGAGTGCTCTATACAATTTGCTAGATGGATCTATTGATAACGCAAAATTTGAGGATGAATGCCGAGCTATTATTGGAAACCAGTCATATATATTATTCACCTTGGACAAATTAATATATAAATTCGTCAAACAGCTTCAAACTGTTGCAAGTGATGAGACTGACAATAAGCTGCTTCAATTATATGAATATGAAAAGTCCCGGAAAACTGGGAAGTTAATTGATTCTGTTTACCATGAAAATGCACGTGTCCTCATTCATGAGGAGAATATTTACAGATTGGAGTTTTCCTCTGTGCCCTCCCGACTGTCCATCCAGTTGATGGACAGTGTGAGTGAAAAGCCCGAGGTGTTTGCAGTTTCTATGGAACCTAATTTTGCATCCTATCTGCACAATGAATTTCTGCCGGTTTTTCCTGGAAAAAAGGAGCCGCATGGGATTACCCTTCAGAGAAACAAGCGCAAATATGCAGGGCAAGATGAATCCTCTGCCTTTTGCAGGGCCATGGATGGTGTTCAGTTAGTCAATGGATTGGAGTGCAAGATAGCTTGCAACTCATCCAAGATCTCTTACGTTCTTGACACAGAAGATTACTTCTTCCGTATGAGAAGGAAAAGGAGAACATCTGGGGCCAGATCACCGTATTGTGATCAGACGAGAGTACAGCGGTTCCACAAATTCTTATCAGTCTCATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1254

Amino Acids

142.2

Weight (kDa)

5.16

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	17 - 61	7.1e-19	Paired amphipathic helix repeat
PAH	PF02671	221 - 264	9e-13	Paired amphipathic helix repeat
Sin3_corepress	PF08295	335 - 427	8.9e-35	Sin3 family co-repressor
Sin3a_C	PF16879	972 - 1220	6.3e-48	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10250
fragaria_vesca	FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790 FvH4_6g49790
malus_domestica	MD09G1041300.v1.1 MD17G1042600.v1.1
pyrus_communis	pycom111g03230 pycom17g03820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1151
Acc36I	ACCTGC	1 cut(s)	2371
AccB1I	GGYRCC	1 cut(s)	2279
AccB7I	CCANNNNNTGG	1 cut(s)	3385
AccI	GTMKAC	2 cut(s)	1866, 2554
AccIII	TCCGGA	1 cut(s)	3043
AciI	CCGC	4 cut(s)	1390, 2539, 3494, 3730
AclI	AACGTT	3 cut(s)	31, 1006, 1348
AclWI	GGATC	5 cut(s)	326, 873, 1461, 3054, 3100
AcoI	YGGCCR	4 cut(s)	226, 281, 2154, 2177
AcsI	RAATTY	5 cut(s)	2958, 3110, 3185, 3461, 3740
AcuI	CTGAAG	8 cut(s)	189, 905, 1038, 1056, 1101, 1454, 2796, 3494
AcvI	CACGTG	1 cut(s)	3311
AfaI	GTAC	4 cut(s)	605, 1012, 2874, 3726
AfiI	CCNNNNNNNGG	5 cut(s)	279, 1820, 2271, 3385, 3561
AflII	CTTAAG	2 cut(s)	1333, 1958
AflIII	ACRYGT	2 cut(s)	81, 3310
AjnI	CCWGG	7 cut(s)	66, 530, 609, 1930, 2506, 2875, 3478
AjuI	GAANNNNNNNTTGG	2 cut(s)	2412, 2444
Alw21I	GWGCWC	6 cut(s)	99, 369, 408, 1084, 1232, 3073
Alw26I	GTCTC	9 cut(s)	1783, 2077, 2109, 2430, 2598, 2671, 2672, 3215, 3757
AlwI	GGATC	5 cut(s)	326, 873, 1461, 3054, 3100
AlwNI	CAGNNNCTG	1 cut(s)	1090
Ama87I	CYCGRG	2 cut(s)	2700, 3407
Aor13HI	TCCGGA	1 cut(s)	3043
AoxI	GGCC	8 cut(s)	226, 281, 1407, 2154, 2177, 2432, 3564, 3693
ApaI	GGGCCC	1 cut(s)	2436
ApeKI	GCWGC	7 cut(s)	131, 197, 200, 1649, 1963, 3036, 3235
ApoI	RAATTY	5 cut(s)	2958, 3110, 3185, 3461, 3740
AseI	ATTAAT	1 cut(s)	3176
Asp700I	GAANNNNTTC	3 cut(s)	757, 2818, 2838
AspLEI	GCGC	2 cut(s)	1152, 3525
AspS9I	GGNCC	5 cut(s)	860, 2432, 2433, 3564, 3693
AsuC2I	CCSGG	1 cut(s)	3265
AvaI	CYCGRG	2 cut(s)	2700, 3407
AvaII	GGWCC	1 cut(s)	860
BaeGI	GKGCMC	2 cut(s)	2436, 3363
BalI	TGGCCA	2 cut(s)	228, 2156
BanI	GGYRCC	1 cut(s)	2279
BanII	GRGCYC	3 cut(s)	369, 1232, 2436
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BauI	CACGAG	1 cut(s)	2907
BbrPI	CACGTG	1 cut(s)	3311
BbsI	GAAGAC	4 cut(s)	1044, 1317, 1722, 2586
Bbv12I	GWGCWC	6 cut(s)	99, 369, 408, 1084, 1232, 3073
BbvI	GCAGC	7 cut(s)	118, 209, 212, 1636, 1975, 3048, 3222
BceAI	ACGGC	2 cut(s)	2164, 2809
BcgI	CGANNNNNNTGC	2 cut(s)	3398, 3432
BciT130I	CCWGG	7 cut(s)	68, 532, 611, 1932, 2508, 2877, 3480
BclI	TGATCA	3 cut(s)	46, 1525, 3712
BcnI	CCSGG	1 cut(s)	3265
BcoDI	GTCTC	9 cut(s)	1783, 2077, 2109, 2430, 2598, 2671, 2672, 3215, 3757
BfaI	CTAG	4 cut(s)	876, 2076, 2108, 3086
BfmI	CTRYAG	1 cut(s)	1668
BfrI	CTTAAG	2 cut(s)	1333, 1958
BfuAI	ACCTGC	1 cut(s)	2371
BglII	AGATCT	2 cut(s)	763, 3627
BisI	GCNGC	8 cut(s)	132, 198, 201, 1650, 1964, 3037, 3236, 3494
BlpI	GCTNAGC	1 cut(s)	1239
BlsI	GCNGC	8 cut(s)	133, 199, 202, 1651, 1965, 3038, 3237, 3495
Bme1390I	CCNGG	8 cut(s)	68, 532, 611, 1932, 2508, 2877, 3265, 3480
Bme18I	GGWCC	1 cut(s)	860
BmeT110I	CYCGRG	2 cut(s)	2700, 3407
BmgT120I	GGNCC	5 cut(s)	860, 2432, 2433, 3564, 3693
BmiI	GGNNCC	8 cut(s)	818, 1812, 2281, 2434, 3432, 3492, 3694, 3734
BmrFI	CCNGG	8 cut(s)	68, 532, 611, 1932, 2508, 2877, 3265, 3480
BmrI	ACTGGG	2 cut(s)	1943, 3282
BmuI	ACTGGG	2 cut(s)	1943, 3282
BoxI	GACNNNNGTC	1 cut(s)	1365
BpiI	GAAGAC	4 cut(s)	1044, 1317, 1722, 2586
BplI	GAGNNNNNCTC	6 cut(s)	245, 277, 1742, 1774, 3338, 3370
BpmI	CTGGAG	3 cut(s)	514, 2529, 2622
Bpu10I	CCTNAGC	3 cut(s)	363, 1083, 2529
Bpu1102I	GCTNAGC	1 cut(s)	1239
BpuEI	CTTGAG	1 cut(s)	1588
BpuMI	CCSGG	1 cut(s)	3265
BsaAI	YACGTR	1 cut(s)	3311
BsaBI	GATNNNNATC	5 cut(s)	147, 342, 2064, 2217, 2793
BsaI	GGTCTC	1 cut(s)	2109
BsaJI	CCNNGG	7 cut(s)	610, 1363, 2506, 2649, 3165, 3408, 3567
BsaWI	WCCGGW	2 cut(s)	1530, 3043
BsaXI	ACNNNNNCTCC	4 cut(s)	572, 602, 632, 662
Bsc4I	CCNNNNNNNGG	5 cut(s)	279, 1820, 2271, 3385, 3561
Bse118I	RCCGGY	1 cut(s)	3469
Bse1I	ACTGG	5 cut(s)	1949, 2184, 3145, 3277, 3379
Bse3DI	GCAATG	1 cut(s)	2302
Bse8I	GATNNNNATC	5 cut(s)	147, 342, 2064, 2217, 2793
BseAI	TCCGGA	1 cut(s)	3043
BseBI	CCWGG	7 cut(s)	68, 532, 611, 1932, 2508, 2877, 3480
BseDI	CCNNGG	7 cut(s)	610, 1363, 2506, 2649, 3165, 3408, 3567
BseJI	GATNNNNATC	5 cut(s)	147, 342, 2064, 2217, 2793
BseLI	CCNNNNNNNGG	5 cut(s)	279, 1820, 2271, 3385, 3561
BseMI	GCAATG	1 cut(s)	2302
BseMII	CTCAG	7 cut(s)	354, 839, 1097, 1581, 2049, 2085, 2748
BseNI	ACTGG	5 cut(s)	1949, 2184, 3145, 3277, 3379
BseRI	GAGGAG	3 cut(s)	788, 2820, 3341
BseSI	GKGCMC	2 cut(s)	2436, 3363
BseXI	GCAGC	7 cut(s)	118, 209, 212, 1636, 1975, 3048, 3222
BseYI	CCCAGC	2 cut(s)	1819, 2516
BsgI	GTGCAG	2 cut(s)	3024, 3437
BshFI	GGCC	8 cut(s)	228, 283, 1409, 2156, 2179, 2434, 3566, 3695
BshNI	GGYRCC	1 cut(s)	2279
BsiHKAI	GWGCWC	6 cut(s)	99, 369, 408, 1084, 1232, 3073
BsiHKCI	CYCGRG	2 cut(s)	2700, 3407
BsiSI	CCGG	4 cut(s)	1531, 3044, 3265, 3470
BslFI	GGGAC	5 cut(s)	464, 503, 2120, 2489, 3247
BslI	CCNNNNNNNGG	5 cut(s)	279, 1820, 2271, 3385, 3561
BsmAI	GTCTC	9 cut(s)	1783, 2077, 2109, 2430, 2598, 2671, 2672, 3215, 3757
BsmFI	GGGAC	5 cut(s)	464, 503, 2120, 2489, 3247
BsmI	GAATGC	1 cut(s)	3128
BsnI	GGCC	8 cut(s)	228, 283, 1409, 2156, 2179, 2434, 3566, 3695
Bso31I	GGTCTC	1 cut(s)	2109
BsoBI	CYCGRG	2 cut(s)	2700, 3407
Bsp120I	GGGCCC	1 cut(s)	2432
Bsp1286I	GDGCHC	8 cut(s)	99, 369, 408, 1084, 1232, 2436, 3073, 3363
Bsp13I	TCCGGA	1 cut(s)	3043
Bsp1407I	TGTACA	1 cut(s)	603
Bsp1720I	GCTNAGC	1 cut(s)	1239
Bsp19I	CCATGG	2 cut(s)	1363, 3567
BspACI	CCGC	4 cut(s)	1390, 2539, 3494, 3730
BspANI	GGCC	8 cut(s)	228, 283, 1409, 2156, 2179, 2434, 3566, 3695
BspCNI	CTCAG	7 cut(s)	355, 840, 1096, 1582, 2048, 2086, 2749
BspEI	TCCGGA	1 cut(s)	3043
BspHI	TCATGA	3 cut(s)	321, 2416, 3322
BspLI	GGNNCC	8 cut(s)	818, 1812, 2281, 2434, 3432, 3492, 3694, 3734
BspMI	ACCTGC	1 cut(s)	2371
BspPI	GGATC	5 cut(s)	326, 873, 1461, 3054, 3100
BspQI	GCTCTTC	1 cut(s)	2700
BspT107I	GGYRCC	1 cut(s)	2279
BspTI	CTTAAG	2 cut(s)	1333, 1958
BspTNI	GGTCTC	1 cut(s)	2109
BsrDI	GCAATG	1 cut(s)	2302
BsrFI	RCCGGY	1 cut(s)	3469
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	5 cut(s)	1949, 2184, 3145, 3277, 3379
BssAI	RCCGGY	1 cut(s)	3469
BssECI	CCNNGG	7 cut(s)	610, 1363, 2506, 2649, 3165, 3408, 3567
BssSI	CACGAG	1 cut(s)	2907
BssT1I	CCWWGG	3 cut(s)	1363, 3165, 3567
Bst2BI	CACGAG	1 cut(s)	2907
Bst2UI	CCWGG	7 cut(s)	68, 532, 611, 1932, 2508, 2877, 3480
Bst4CI	ACNGT	9 cut(s)	122, 1001, 1297, 2559, 2636, 3208, 3372, 3392, 3705
Bst6I	CTCTTC	4 cut(s)	1743, 2415, 2448, 2700
BstAFI	CTTAAG	2 cut(s)	1333, 1958
BstAPI	GCANNNNNTGC	1 cut(s)	2363
BstAUI	TGTACA	1 cut(s)	603
BstBAI	YACGTR	1 cut(s)	3311
BstC8I	GCNNGC	4 cut(s)	1060, 1245, 2526, 3613
BstDSI	CCRYGG	2 cut(s)	1363, 3567
BstEII	GGTNACC	1 cut(s)	1358
BstENI	CCTNNNNNAGG	1 cut(s)	3559
BstHHI	GCGC	2 cut(s)	1152, 3525
BstMAI	GTCTC	9 cut(s)	1783, 2077, 2109, 2430, 2598, 2671, 2672, 3215, 3757
BstNI	CCWGG	7 cut(s)	68, 532, 611, 1932, 2508, 2877, 3480
BstNSI	RCATGY	3 cut(s)	85, 604, 2873
BstPAI	GACNNNNGTC	1 cut(s)	1365
BstPI	GGTNACC	1 cut(s)	1358
BstSCI	CCNGG	8 cut(s)	66, 530, 609, 1930, 2506, 2875, 3263, 3478
BstSFI	CTRYAG	1 cut(s)	1668
BstSLI	GKGCMC	2 cut(s)	2436, 3363
BstV1I	GCAGC	7 cut(s)	118, 209, 212, 1636, 1975, 3048, 3222
BstV2I	GAAGAC	4 cut(s)	1044, 1317, 1722, 2586
BstX2I	RGATCY	6 cut(s)	763, 878, 1466, 3046, 3092, 3627
BstYI	RGATCY	6 cut(s)	763, 878, 1466, 3046, 3092, 3627
BsuRI	GGCC	8 cut(s)	228, 283, 1409, 2156, 2179, 2434, 3566, 3695
BtgI	CCRYGG	2 cut(s)	1363, 3567
BtgZI	GCGATG	1 cut(s)	1935
BtsI	GCAGTG	2 cut(s)	1320, 2680
BtsIMutI	CAGTG	6 cut(s)	127, 1320, 1956, 2641, 2680, 3397
BveI	ACCTGC	1 cut(s)	2371
Cac8I	GCNNGC	4 cut(s)	1060, 1245, 2526, 3613
CaiI	CAGNNNCTG	1 cut(s)	1090
CciI	TCATGA	3 cut(s)	321, 2416, 3322
CfoI	GCGC	2 cut(s)	1152, 3525
Cfr10I	RCCGGY	1 cut(s)	3469
Cfr13I	GGNCC	5 cut(s)	860, 2432, 2433, 3564, 3693
CseI	GACGC	1 cut(s)	180
CsiI	ACCWGGT	1 cut(s)	2875
Csp6I	GTAC	4 cut(s)	604, 1011, 2873, 3725
CviQI	GTAC	4 cut(s)	604, 1011, 2873, 3725
DraI	TTTAAA	2 cut(s)	1141, 1329
EaeI	YGGCCR	4 cut(s)	226, 281, 2154, 2177
Eam1104I	CTCTTC	4 cut(s)	1743, 2415, 2448, 2700
EarI	CTCTTC	4 cut(s)	1743, 2415, 2448, 2700
Ecl136II	GAGCTC	2 cut(s)	367, 1230
Eco130I	CCWWGG	3 cut(s)	1363, 3165, 3567
Eco24I	GRGCYC	3 cut(s)	369, 1232, 2436
Eco31I	GGTCTC	1 cut(s)	2109
Eco32I	GATATC	2 cut(s)	1633, 1702
Eco47I	GGWCC	1 cut(s)	860
Eco53kI	GAGCTC	2 cut(s)	367, 1230
Eco57I	CTGAAG	8 cut(s)	189, 905, 1038, 1056, 1101, 1454, 2796, 3494
Eco72I	CACGTG	1 cut(s)	3311
Eco88I	CYCGRG	2 cut(s)	2700, 3407
Eco91I	GGTNACC	1 cut(s)	1358
EcoICRI	GAGCTC	2 cut(s)	367, 1230
EcoNI	CCTNNNNNAGG	1 cut(s)	3559
EcoO109I	RGGNCCY	1 cut(s)	2433
EcoO65I	GGTNACC	1 cut(s)	1358
EcoRII	CCWGG	7 cut(s)	66, 530, 609, 1930, 2506, 2875, 3478
EcoRV	GATATC	2 cut(s)	1633, 1702
EcoT14I	CCWWGG	3 cut(s)	1363, 3165, 3567
EcoT22I	ATGCAT	2 cut(s)	291, 2176
EcoT38I	GRGCYC	3 cut(s)	369, 1232, 2436
ErhI	CCWWGG	3 cut(s)	1363, 3165, 3567
FalI	AAGNNNNNCTT	2 cut(s)	2412, 2444
FaqI	GGGAC	5 cut(s)	464, 503, 2120, 2489, 3247
FauNDI	CATATG	3 cut(s)	291, 1146, 1680
FbaI	TGATCA	3 cut(s)	46, 1525, 3712
FblI	GTMKAC	2 cut(s)	1866, 2554
Fnu4HI	GCNGC	8 cut(s)	132, 198, 201, 1650, 1964, 3037, 3236, 3494
FriOI	GRGCYC	3 cut(s)	369, 1232, 2436
Fsp4HI	GCNGC	8 cut(s)	132, 198, 201, 1650, 1964, 3037, 3236, 3494
FspBI	CTAG	4 cut(s)	876, 2076, 2108, 3086
FspI	TGCGCA	1 cut(s)	1151
GlaI	GCGC	2 cut(s)	1151, 3524
GluI	GCNGC	8 cut(s)	132, 198, 201, 1650, 1964, 3037, 3236, 3494
GsaI	CCCAGC	2 cut(s)	1823, 2520
GsuI	CTGGAG	3 cut(s)	514, 2529, 2622
HaeIII	GGCC	8 cut(s)	228, 283, 1409, 2156, 2179, 2434, 3566, 3695
HapII	CCGG	4 cut(s)	1531, 3044, 3265, 3470
HgaI	GACGC	1 cut(s)	180
HhaI	GCGC	2 cut(s)	1152, 3525
Hin6I	GCGC	2 cut(s)	1150, 3523
HinP1I	GCGC	2 cut(s)	1150, 3523
HincII	GTYRAC	2 cut(s)	1867, 2189
HindII	GTYRAC	2 cut(s)	1867, 2189
HpaII	CCGG	4 cut(s)	1531, 3044, 3265, 3470
Hpy166II	GTNNAC	8 cut(s)	29, 118, 171, 1004, 1867, 2189, 2555, 3295
Hpy8I	GTNNAC	8 cut(s)	29, 118, 171, 1004, 1867, 2189, 2555, 3295
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4III	ACNGT	9 cut(s)	122, 1001, 1297, 2559, 2636, 3208, 3372, 3392, 3705
HpyCH4IV	ACGT	6 cut(s)	31, 304, 1006, 1348, 3310, 3636
HpySE526I	ACGT	6 cut(s)	31, 304, 1006, 1348, 3310, 3636
HspAI	GCGC	2 cut(s)	1150, 3523
Kpn2I	TCCGGA	1 cut(s)	3043
Ksp22I	TGATCA	3 cut(s)	46, 1525, 3712
LguI	GCTCTTC	1 cut(s)	2700
LmnI	GCTCC	9 cut(s)	94, 403, 574, 793, 929, 1533, 1810, 2207, 3490
Lsp1109I	GCAGC	7 cut(s)	118, 209, 212, 1636, 1975, 3048, 3222
MabI	ACCWGGT	1 cut(s)	2875
MaeI	CTAG	4 cut(s)	876, 2076, 2108, 3086
MaeII	ACGT	6 cut(s)	31, 304, 1006, 1348, 3310, 3636
MaeIII	GTNAC	4 cut(s)	553, 736, 1111, 1358
MfeI	CAATTG	2 cut(s)	2202, 2472
MflI	RGATCY	6 cut(s)	763, 878, 1466, 3046, 3092, 3627
MhlI	GDGCHC	8 cut(s)	99, 369, 408, 1084, 1232, 2436, 3073, 3363
MlsI	TGGCCA	2 cut(s)	228, 2156
MluNI	TGGCCA	2 cut(s)	228, 2156
MlyI	GAGTC	4 cut(s)	581, 1229, 2432, 2897
MmeI	TCCRAC	3 cut(s)	1185, 1424, 2782
Mox20I	TGGCCA	2 cut(s)	228, 2156
Mph1103I	ATGCAT	2 cut(s)	291, 2176
MroI	TCCGGA	1 cut(s)	3043
MroXI	GAANNNNTTC	3 cut(s)	757, 2818, 2838
MscI	TGGCCA	2 cut(s)	228, 2156
MslI	CAYNNNNRTG	1 cut(s)	3303
Msp20I	TGGCCA	2 cut(s)	228, 2156
MspA1I	CMGCKG	2 cut(s)	2684, 3730
MspCI	CTTAAG	2 cut(s)	1333, 1958
MspI	CCGG	4 cut(s)	1531, 3044, 3265, 3470
MspR9I	CCNGG	8 cut(s)	68, 532, 611, 1932, 2508, 2877, 3265, 3480
MunI	CAATTG	2 cut(s)	2202, 2472
Mva1269I	GAATGC	1 cut(s)	3128
MvaI	CCWGG	7 cut(s)	68, 532, 611, 1932, 2508, 2877, 3480
NciI	CCSGG	1 cut(s)	3265
NcoI	CCATGG	2 cut(s)	1363, 3567
NdeI	CATATG	3 cut(s)	291, 1146, 1680
NlaIV	GGNNCC	8 cut(s)	818, 1812, 2281, 2434, 3432, 3492, 3694, 3734
NmeAIII	GCCGAG	1 cut(s)	3152
NmuCI	GTSAC	4 cut(s)	553, 736, 1111, 1358
NsbI	TGCGCA	1 cut(s)	1151
NsiI	ATGCAT	2 cut(s)	291, 2176
NspI	RCATGY	3 cut(s)	85, 604, 2873
PagI	TCATGA	3 cut(s)	321, 2416, 3322
PciI	ACATGT	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	2700
PctI	GAATGC	1 cut(s)	3128
PdmI	GAANNNNTTC	3 cut(s)	757, 2818, 2838
PfeI	GAWTC	9 cut(s)	615, 1556, 1844, 1879, 1940, 1954, 2084, 3287, 3545
PflMI	CCANNNNNTGG	1 cut(s)	3385
PfoI	TCCNGGA	4 cut(s)	66, 530, 3263, 3478
PkrI	GCNGC	8 cut(s)	133, 199, 202, 1651, 1965, 3038, 3237, 3495
PleI	GAGTC	4 cut(s)	581, 1228, 2431, 2897
PmaCI	CACGTG	1 cut(s)	3311
PmlI	CACGTG	1 cut(s)	3311
PpsI	GAGTC	4 cut(s)	581, 1228, 2431, 2897
Ppu21I	YACGTR	1 cut(s)	3311
PscI	ACATGT	1 cut(s)	81
PshAI	GACNNNNGTC	1 cut(s)	1365
PshBI	ATTAAT	1 cut(s)	3176
Psp124BI	GAGCTC	2 cut(s)	369, 1232
Psp1406I	AACGTT	3 cut(s)	31, 1006, 1348
Psp6I	CCWGG	7 cut(s)	66, 530, 609, 1930, 2506, 2875, 3478
PspCI	CACGTG	1 cut(s)	3311
PspEI	GGTNACC	1 cut(s)	1358
PspFI	CCCAGC	2 cut(s)	1819, 2516
PspGI	CCWGG	7 cut(s)	66, 530, 609, 1930, 2506, 2875, 3478
PspN4I	GGNNCC	8 cut(s)	818, 1812, 2281, 2434, 3432, 3492, 3694, 3734
PspOMI	GGGCCC	1 cut(s)	2432
PspPI	GGNCC	5 cut(s)	860, 2432, 2433, 3564, 3693
PstNI	CAGNNNCTG	1 cut(s)	1090
PsuI	RGATCY	6 cut(s)	763, 878, 1466, 3046, 3092, 3627
PvuII	CAGCTG	1 cut(s)	2684
RsaI	GTAC	4 cut(s)	605, 1012, 2874, 3726
RsaNI	GTAC	4 cut(s)	604, 1011, 2873, 3725
RseI	CAYNNNNRTG	1 cut(s)	3303
SacI	GAGCTC	2 cut(s)	369, 1232
SalI	GTCGAC	1 cut(s)	1865
SapI	GCTCTTC	1 cut(s)	2700
SatI	GCNGC	8 cut(s)	132, 198, 201, 1650, 1964, 3037, 3236, 3494
Sau96I	GGNCC	5 cut(s)	860, 2432, 2433, 3564, 3693
SchI	GAGTC	4 cut(s)	581, 1229, 2432, 2897
ScrFI	CCNGG	8 cut(s)	68, 532, 611, 1932, 2508, 2877, 3265, 3480
SduI	GDGCHC	8 cut(s)	99, 369, 408, 1084, 1232, 2436, 3073, 3363
SexAI	ACCWGGT	1 cut(s)	2875
SfcI	CTRYAG	1 cut(s)	1668
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	3303
SmlI	CTYRAG	3 cut(s)	1333, 1567, 1958
SmoI	CTYRAG	3 cut(s)	1333, 1567, 1958
SsiI	CCGC	4 cut(s)	1390, 2539, 3494, 3730
SspI	AATATT	2 cut(s)	1739, 3334
SspMI	CTAG	4 cut(s)	876, 2076, 2108, 3086
SstI	GAGCTC	2 cut(s)	369, 1232
StyD4I	CCNGG	8 cut(s)	66, 530, 609, 1930, 2506, 2875, 3263, 3478
StyI	CCWWGG	3 cut(s)	1363, 3165, 3567
TaaI	ACNGT	9 cut(s)	122, 1001, 1297, 2559, 2636, 3208, 3372, 3392, 3705
TaiI	ACGT	6 cut(s)	34, 307, 1009, 1351, 3313, 3639
TaqI	TCGA	4 cut(s)	88, 369, 1834, 1866
TatI	WGTACW	3 cut(s)	603, 1010, 3724
TauI	GCSGC	1 cut(s)	3496
TfiI	GAWTC	9 cut(s)	615, 1556, 1844, 1879, 1940, 1954, 2084, 3287, 3545
TscAI	CASTG	6 cut(s)	127, 1327, 1956, 2641, 2680, 3397
TseFI	GTSAC	4 cut(s)	553, 736, 1111, 1358
TseI	GCWGC	7 cut(s)	131, 197, 200, 1649, 1963, 3036, 3235
Tsp45I	GTSAC	4 cut(s)	553, 736, 1111, 1358
TspGWI	ACGGA	6 cut(s)	717, 1292, 2144, 2180, 2322, 3653
TspRI	CASTG	6 cut(s)	127, 1327, 1956, 2641, 2680, 3397
Van91I	CCANNNNNTGG	1 cut(s)	3385
Vha464I	CTTAAG	2 cut(s)	1333, 1958
VpaK11BI	GGWCC	1 cut(s)	860
VspI	ATTAAT	1 cut(s)	3176
XagI	CCTNNNNNAGG	1 cut(s)	3559
XapI	RAATTY	5 cut(s)	2958, 3110, 3185, 3461, 3740
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	3 cut(s)	85, 604, 2873
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3382
XmiI	GTMKAC	2 cut(s)	1866, 2554
XmnI	GAANNNNTTC	3 cut(s)	757, 2818, 2838
XspI	CTAG	4 cut(s)	876, 2076, 2108, 3086
Zsp2I	ATGCAT	2 cut(s)	291, 2176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.