AT1G12230

Transaldolase/Fructose-6-phosphate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015990
Physical Location & Seq
Forward (+)
4147962 .. 4151056
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12230.2

Sequence Viewer

Length: 1218 bp
ATGCCACTCTCGTTGCAATCTCCGCCTTGTGCAACTCTCTCTGCTTCAATCCGAAAGGGACGATGGAAGACGCTCGCCGCCGGATTCTCCGTTACTCCTCTTCCCGCCGTTAACTTCAGTCTTCGGCGATCGATTCCTCGGATTCTTGCTTCCGCTAGTTCCTCCTCCTCTCCTGCGTCTTCGTCTCTCGAAGCTGGTGAGAACAATGAGCTAAATGCTGTTTCAGCTTTTAGTGAGATTGTTCCTGATACTGTCGTTTTCGATGACTTTGAGAGGTTTCCGCCGACTGCAGCTACTGTTAGCTCTGCTCTTCTTCTGGGTATCTGTGGTCTACCTGATACCATTTTCCGCAATGCTGTGGACATGGCTTTGGCGGATTCTTCTTGTGCAGGGCTTGAAACCACAGAATCTCGACTCTCTTGCTTTTTCAATAAGGCTATTGTCAACGTAGGTGGCGATCTTGTCAAACTCGTTCCAGGTCGAGTTTCTACTGAAGTGGATGCACGTCTTGCTTATGACACAAATGGCATTATCCGCAAGGTTCATGATCTGCTGAGACTATACAATGAAATCGATGTACCACACGACCGGCTCCTATTCAAAATCCCTGCAACTTGGCAAGGTATTGAAGCTGCAAGATTGTTGGAATCAGAGGGAATCCAAACGCATATGACCTTTGTTTACAGCTTTGCACAAGCTGCAGCAGCTTCTCAAGCCGGTGCTTCTGTCATTCAGATTTTCGTCGGTCGCCTCAGGGATTGGGCGCGTAATCATTCGGGAGATACCGAGATTGAATCTGCTATTAAATCGGGAGAAGATCCTGGTTTGGCCTTGGTCAAAAGATCATATAACTACATTCACAAGTATGGTTACAAGTCCAAGCTGATGGCTGCTGCTGTCCGGAACAAACAAGACTTGTTCAGTCTTCTCGGGGTCGATTATGTCATTGCACCATTAAAGGTACTGCAATCTCTTAAAGATTCACCCGCCATTCCCGATGATGAAAAATACTCATTTGTTCGGAAACTTACTCCTGAAACTGCAACACATTACCACTTCACCAACAAAGAGCTGGTCAAATGGGACCAGCTAAGCTTGGCTTCATCTATGGGTCCTGCATCAGTGGAGCTTTTATCAGCCGGTGTTGAAGGTTATGCGAACCAAGCGAAACGTGTTGAAGAGCTTTTCGGGAAGATTTGGCCACCTCCTAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

405

Amino Acids

43.99

Weight (kDa)

6.41

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAL_FSA PF00923 136 - 415 7.3e-48 Transaldolase/Fructose-6-phosphate aldolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12230 AT1G12230
fragaria_vesca FvH4_5g00280
malus_domestica MD06G1067000.v1.1
prunus_persica Prupe.5G075500_v2.0.a1
pyrus_communis pycom06g05960
rosa_chinensis RchiOBHm_Chr7g0202331
rosa_laevigata RLG00000003608
rosa_multiflora Rmu_sc0000266.1_g000004
rosa_roxburghii Rroxscaffold_3G00254660
rosa_rugosa Rorug07G0069900
rosa_samantha Rh7BG198400 Rh7CG208400 Rh7DG204100
rosa_wichuraiana Rw7G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 331
AccII CGCG 1 cut(s) 766
AccIII TCCGGA 1 cut(s) 900
AciI CCGC 9 cut(s) 23, 78, 105, 153, 281, 349, 374, 535, 987
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 1 cut(s) 1199
AcuI CTGAAG 2 cut(s) 100, 513
AfaI GTAC 2 cut(s) 579, 963
AflIII ACRYGT 1 cut(s) 1171
AgsI TTSAA 8 cut(s) 48, 398, 430, 601, 629, 794, 1148, 1178
AjiI CACGTC 1 cut(s) 506
AjnI CCWGG 2 cut(s) 475, 820
Alw26I GTCTC 2 cut(s) 189, 550
AlwI GGATC 1 cut(s) 812
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 929
Aor13HI TCCGGA 1 cut(s) 900
AoxI GGCC 2 cut(s) 828, 1199
ApeKI GCWGC 7 cut(s) 290, 632, 698, 701, 704, 890, 893
ArsI GACNNNNNNTTYG 2 cut(s) 1059, 1091
AspLEI GCGC 1 cut(s) 766
AspS9I GGNCC 2 cut(s) 1084, 1112
AsuHPI GGTGA 3 cut(s) 209, 975, 1051
AvaI CYCGRG 1 cut(s) 929
AvaII GGWCC 2 cut(s) 1084, 1112
AxyI CCTNAGG 1 cut(s) 752
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BalI TGGCCA 1 cut(s) 1201
BbsI GAAGAC 4 cut(s) 74, 113, 171, 917
BbvI GCAGC 7 cut(s) 302, 619, 685, 713, 716, 877, 880
BccI CCATC 2 cut(s) 57, 880
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 402, 436
BciT130I CCWGG 2 cut(s) 477, 822
BcoDI GTCTC 2 cut(s) 189, 550
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 288, 699
BisI GCNGC 8 cut(s) 78, 291, 633, 699, 702, 705, 891, 894
BlpI GCTNAGC 1 cut(s) 1091
BlsI GCNGC 8 cut(s) 79, 292, 634, 700, 703, 706, 892, 895
Bme1390I CCNGG 2 cut(s) 477, 822
Bme18I GGWCC 2 cut(s) 1084, 1112
BmeT110I CYCGRG 1 cut(s) 929
BmgBI CACGTC 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 1084, 1112
BmiI GGNNCC 3 cut(s) 593, 1085, 1113
BmrFI CCNGG 2 cut(s) 477, 822
BmsI GCATC 2 cut(s) 490, 1127
BpiI GAAGAC 4 cut(s) 74, 113, 171, 917
Bpu1102I GCTNAGC 1 cut(s) 1091
BpuEI CTTGAG 1 cut(s) 696
Bsa29I ATCGAT 2 cut(s) 131, 573
BsaJI CCNNGG 2 cut(s) 137, 831
BsaWI WCCGGW 1 cut(s) 900
Bse118I RCCGGY 3 cut(s) 588, 716, 1139
Bse21I CCTNAGG 1 cut(s) 752
Bse3DI GCAATG 2 cut(s) 358, 945
BseAI TCCGGA 1 cut(s) 900
BseBI CCWGG 2 cut(s) 477, 822
BseCI ATCGAT 2 cut(s) 131, 573
BseDI CCNNGG 2 cut(s) 137, 831
BseGI GGATG 1 cut(s) 505
BseMI GCAATG 2 cut(s) 358, 945
BseMII CTCAG 2 cut(s) 545, 766
BseRI GAGGAG 3 cut(s) 87, 154, 157
BseXI GCAGC 7 cut(s) 302, 619, 685, 713, 716, 877, 880
BsgI GTGCAG 1 cut(s) 408
Bsh1236I CGCG 1 cut(s) 766
Bsh1285I CGRYCG 3 cut(s) 131, 589, 748
BshFI GGCC 2 cut(s) 830, 1201
BshVI ATCGAT 2 cut(s) 131, 573
BsiEI CGRYCG 3 cut(s) 131, 589, 748
BsiHKCI CYCGRG 1 cut(s) 929
BsiSI CCGG 5 cut(s) 81, 589, 717, 901, 1140
BslFI GGGAC 2 cut(s) 72, 1097
BsmAI GTCTC 2 cut(s) 189, 550
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 72, 1097
BsnI GGCC 2 cut(s) 830, 1201
BsoBI CYCGRG 1 cut(s) 929
Bsp13I TCCGGA 1 cut(s) 900
Bsp143I GATC 5 cut(s) 128, 457, 547, 817, 842
Bsp1720I GCTNAGC 1 cut(s) 1091
BspACI CCGC 9 cut(s) 23, 78, 105, 153, 281, 349, 374, 535, 987
BspANI GGCC 2 cut(s) 830, 1201
BspCNI CTCAG 2 cut(s) 546, 765
BspDI ATCGAT 2 cut(s) 131, 573
BspEI TCCGGA 1 cut(s) 900
BspFNI CGCG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 3 cut(s) 593, 1085, 1113
BspMAI CTGCAG 2 cut(s) 292, 703
BspPI GGATC 1 cut(s) 812
BspQI GCTCTTC 2 cut(s) 315, 1173
BsrDI GCAATG 2 cut(s) 358, 945
BsrFI RCCGGY 3 cut(s) 588, 716, 1139
BssAI RCCGGY 3 cut(s) 588, 716, 1139
BssECI CCNNGG 2 cut(s) 137, 831
BssMI GATC 5 cut(s) 128, 457, 547, 817, 842
BssT1I CCWWGG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 477, 822
Bst4CI ACNGT 2 cut(s) 253, 298
Bst6I CTCTTC 3 cut(s) 105, 315, 1173
BstAPI GCANNNNNTGC 2 cut(s) 509, 698
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 554, 752, 1091
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 1 cut(s) 766
BstHHI GCGC 1 cut(s) 766
BstKTI GATC 5 cut(s) 131, 460, 550, 820, 845
BstMAI GTCTC 2 cut(s) 189, 550
BstMBI GATC 5 cut(s) 128, 457, 547, 817, 842
BstMCI CGRYCG 3 cut(s) 131, 589, 748
BstMWI GCNNNNNNNGC 8 cut(s) 22, 224, 509, 534, 698, 704, 713, 1163
BstNI CCWGG 2 cut(s) 477, 822
BstSCI CCNGG 2 cut(s) 475, 820
BstSFI CTRYAG 2 cut(s) 288, 699
BstUI CGCG 1 cut(s) 766
BstV1I GCAGC 7 cut(s) 302, 619, 685, 713, 716, 877, 880
BstV2I GAAGAC 4 cut(s) 74, 113, 171, 917
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 1 cut(s) 886
BstYI RGATCY 1 cut(s) 817
Bsu15I ATCGAT 2 cut(s) 131, 573
Bsu36I CCTNAGG 1 cut(s) 752
BsuRI GGCC 2 cut(s) 830, 1201
BsuTUI ATCGAT 2 cut(s) 131, 573
BtrI CACGTC 1 cut(s) 506
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 1128
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 296
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 766
Cfr10I RCCGGY 3 cut(s) 588, 716, 1139
Cfr13I GGNCC 2 cut(s) 1084, 1112
ClaI ATCGAT 2 cut(s) 131, 573
CseI GACGC 2 cut(s) 79, 165
Csp6I GTAC 2 cut(s) 578, 962
CspCI CAANNNNNGTGG 3 cut(s) 29, 433, 468
CviAII CATG 2 cut(s) 364, 545
CviQI GTAC 2 cut(s) 578, 962
DdeI CTNAG 3 cut(s) 554, 752, 1091
DpnI GATC 5 cut(s) 130, 459, 549, 819, 844
DpnII GATC 5 cut(s) 128, 457, 547, 817, 842
EaeI YGGCCR 1 cut(s) 1199
Eam1104I CTCTTC 3 cut(s) 105, 315, 1173
EarI CTCTTC 3 cut(s) 105, 315, 1173
EciI GGCGGA 3 cut(s) 12, 270, 389
Eco130I CCWWGG 1 cut(s) 831
Eco47I GGWCC 2 cut(s) 1084, 1112
Eco57I CTGAAG 2 cut(s) 100, 513
Eco81I CCTNAGG 1 cut(s) 752
Eco88I CYCGRG 1 cut(s) 929
EcoO109I RGGNCCY 1 cut(s) 1112
EcoRII CCWGG 2 cut(s) 475, 820
EcoT14I CCWWGG 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 831
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 2 cut(s) 367, 548
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FaqI GGGAC 2 cut(s) 72, 1097
FatI CATG 2 cut(s) 363, 544
FauI CCCGC 2 cut(s) 112, 994
FauNDI CATATG 1 cut(s) 669
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 8 cut(s) 78, 291, 633, 699, 702, 705, 891, 894
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 8 cut(s) 78, 291, 633, 699, 702, 705, 891, 894
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 765
GluI GCNGC 8 cut(s) 78, 291, 633, 699, 702, 705, 891, 894
HaeIII GGCC 2 cut(s) 830, 1201
HapII CCGG 5 cut(s) 81, 589, 717, 901, 1140
HgaI GACGC 2 cut(s) 79, 165
HhaI GCGC 1 cut(s) 766
Hin1II CATG 2 cut(s) 367, 548
Hin6I GCGC 1 cut(s) 764
HinP1I GCGC 1 cut(s) 764
HincII GTYRAC 2 cut(s) 112, 445
HindII GTYRAC 2 cut(s) 112, 445
HindIII AAGCTT 1 cut(s) 1093
HpaI GTTAAC 1 cut(s) 112
HpaII CCGG 5 cut(s) 81, 589, 717, 901, 1140
HphI GGTGA 3 cut(s) 209, 975, 1051
Hpy166II GTNNAC 5 cut(s) 112, 332, 361, 445, 682
Hpy188I TCNGA 5 cut(s) 53, 141, 652, 735, 1023
Hpy8I GTNNAC 5 cut(s) 112, 332, 361, 445, 682
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 1 cut(s) 1142
HpyCH4III ACNGT 2 cut(s) 253, 298
HpyCH4IV ACGT 3 cut(s) 447, 505, 1171
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 224, 509, 534, 698, 704, 713, 1163
HpyF3I CTNAG 3 cut(s) 554, 752, 1091
HpySE526I ACGT 3 cut(s) 447, 505, 1171
Hsp92II CATG 2 cut(s) 367, 548
HspAI GCGC 1 cut(s) 764
Kpn2I TCCGGA 1 cut(s) 900
KspAI GTTAAC 1 cut(s) 112
Kzo9I GATC 5 cut(s) 128, 457, 547, 817, 842
LguI GCTCTTC 2 cut(s) 315, 1173
LmnI GCTCC 2 cut(s) 597, 1126
Lsp1109I GCAGC 7 cut(s) 302, 619, 685, 713, 716, 877, 880
LweI GCATC 2 cut(s) 490, 1127
MaeI CTAG 1 cut(s) 156
MaeII ACGT 3 cut(s) 447, 505, 1171
MaeIII GTNAC 2 cut(s) 91, 869
MalI GATC 5 cut(s) 130, 459, 549, 819, 844
MboI GATC 5 cut(s) 128, 457, 547, 817, 842
MflI RGATCY 1 cut(s) 817
MlsI TGGCCA 1 cut(s) 1201
MluNI TGGCCA 1 cut(s) 1201
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 9 cut(s) 108, 147, 172, 175, 178, 267, 646, 761, 1215
Mox20I TGGCCA 1 cut(s) 1201
MroI TCCGGA 1 cut(s) 900
MscI TGGCCA 1 cut(s) 1201
MseI TTAA 4 cut(s) 111, 804, 956, 975
MslI CAYNNNNRTG 1 cut(s) 864
Msp20I TGGCCA 1 cut(s) 1201
MspI CCGG 5 cut(s) 81, 589, 717, 901, 1140
MspR9I CCNGG 2 cut(s) 477, 822
MvaI CCWGG 2 cut(s) 477, 822
MvnI CGCG 1 cut(s) 766
MwoI GCNNNNNNNGC 8 cut(s) 22, 224, 509, 534, 698, 704, 713, 1163
NdeI CATATG 1 cut(s) 669
NdeII GATC 5 cut(s) 128, 457, 547, 817, 842
NlaIII CATG 2 cut(s) 367, 548
NlaIV GGNNCC 3 cut(s) 593, 1085, 1113
PagI TCATGA 1 cut(s) 544
PciSI GCTCTTC 2 cut(s) 315, 1173
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PfeI GAWTC 9 cut(s) 84, 133, 142, 377, 407, 647, 657, 794, 980
PkrI GCNGC 8 cut(s) 79, 292, 634, 700, 703, 706, 892, 895
Ple19I CGATCG 1 cut(s) 131
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
PpuMI RGGWCCY 1 cut(s) 1112
Psp5II RGGWCCY 1 cut(s) 1112
Psp6I CCWGG 2 cut(s) 475, 820
PspGI CCWGG 2 cut(s) 475, 820
PspN4I GGNNCC 3 cut(s) 593, 1085, 1113
PspPI GGNCC 2 cut(s) 1084, 1112
PspPPI RGGWCCY 1 cut(s) 1112
PstI CTGCAG 2 cut(s) 292, 703
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 817
PvuI CGATCG 1 cut(s) 131
RsaI GTAC 2 cut(s) 579, 963
RsaNI GTAC 2 cut(s) 578, 962
RseI CAYNNNNRTG 1 cut(s) 864
SapI GCTCTTC 2 cut(s) 315, 1173
SaqAI TTAA 4 cut(s) 111, 804, 956, 975
SatI GCNGC 8 cut(s) 78, 291, 633, 699, 702, 705, 891, 894
Sau3AI GATC 5 cut(s) 128, 457, 547, 817, 842
Sau96I GGNCC 2 cut(s) 1084, 1112
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 477, 822
SfaNI GCATC 2 cut(s) 490, 1127
SfcI CTRYAG 2 cut(s) 288, 699
SinI GGWCC 2 cut(s) 1084, 1112
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 1 cut(s) 711
SmoI CTYRAG 1 cut(s) 711
SsiI CCGC 9 cut(s) 23, 78, 105, 153, 281, 349, 374, 535, 987
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 475, 820
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 2 cut(s) 253, 298
TaiI ACGT 3 cut(s) 450, 508, 1174
TaqI TCGA 7 cut(s) 131, 189, 261, 412, 481, 573, 936
TaqII GACCGA 1 cut(s) 734
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 9 cut(s) 84, 133, 142, 377, 407, 647, 657, 794, 980
Tru1I TTAA 4 cut(s) 111, 804, 956, 975
Tru9I TTAA 4 cut(s) 111, 804, 956, 975
TscAI CASTG 1 cut(s) 1128
TseI GCWGC 7 cut(s) 290, 632, 698, 701, 704, 890, 893
TspDTI ATGAA 4 cut(s) 533, 582, 1017, 1092
TspGWI ACGGA 1 cut(s) 79
TspRI CASTG 1 cut(s) 1128
VpaK11BI GGWCC 2 cut(s) 1084, 1112
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmiI GTMKAC 1 cut(s) 331
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.