Rorug07G0069900

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015990
Physical Location & Seq
Forward (+)
5322539 .. 5324294
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0069900.1

Sequence Viewer

Length: 726 bp
ATGATTTGTAAAGCCATGGCTAAGAAGAGAAAAACGTCAGGCAGCAGCTACCACGACTCAAAGACAAACAAAAAGAAAGACGATGAACAAAACAAAAGCCCTAGCACGGTCTTCGAAGTCGACAGATACGTACCCGAATTGCCTGACCTTGTTATCCACCAAATCCTCTTATTTCTCACTCTCCTTTCCCCCAAGCACGCCGCTCGGGCCAGCCTTGTTTCCAAGCAATGGGCAAGCATATGGTTTTCGCTTCCGGTACTAGCTTTCGAGGAGTACGATCAGGATCCTAAGCCATACACTGATGATAAGGCTCGGCGAAAACAGTTCATCAACTTCGTGAATACCAATTTGAAGCGCTGGGAGAAAGATAAGCGCTACTTAGATAAGTTGGGGCTTCGTATGAAATACTCGGCAAGTCGTGGCACCATACAAAAGTGCTTGAGTTTTGCTGTTGATAGAAACGTTAAAGAGATAGACATAAGTTTTACAAGAGAAAGCATAGCTGGGCAGAGATGCAAAACCTTCTCCTTATCACCAATGCTTCTCAACAGTGCAAAATCTCTAACCATTCTAAAGTTGGAGAATGTAAATCTCCTAAGGGACGTCACTAGTGCTATGATAAGCCTTCCGTCTTTGAAAACTATGTCCCTCAACCATTTGCGAAGTAATTTGACATTCTTGCGCAATTACTTTCGGGGTGTCCTTTGCTTGAGAATTTGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

241

Amino Acids

27.82

Weight (kDa)

9.82

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12230 AT1G12230
fragaria_vesca FvH4_5g00280
malus_domestica MD06G1067000.v1.1
prunus_persica Prupe.5G075500_v2.0.a1
pyrus_communis pycom06g05960
rosa_chinensis RchiOBHm_Chr7g0202331
rosa_laevigata RLG00000003608
rosa_multiflora Rmu_sc0000266.1_g000004
rosa_roxburghii Rroxscaffold_3G00254660
rosa_rugosa Rorug07G0069900
rosa_samantha Rh7BG198400 Rh7CG208400 Rh7DG204100
rosa_wichuraiana Rw7G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 606
Acc16I TGCGCA 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 228
AccBSI CCGCTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 120
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 278, 291
AcsI RAATTY 1 cut(s) 714
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 3 cut(s) 132, 258, 275
AfeI AGCGCT 2 cut(s) 356, 374
AfiI CCNNNNNNNGG 2 cut(s) 106, 228
AgsI TTSAA 2 cut(s) 352, 637
AhlI ACTAGT 1 cut(s) 608
AluBI AGCT 3 cut(s) 48, 263, 503
AluI AGCT 3 cut(s) 48, 263, 503
AlwI GGATC 2 cut(s) 278, 291
Ama87I CYCGRG 1 cut(s) 204
Aor51HI AGCGCT 2 cut(s) 356, 374
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 42, 45
ApoI RAATTY 1 cut(s) 714
AspLEI GCGC 3 cut(s) 357, 375, 684
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 525
AsuII TTCGAA 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 204
AxyI CCTNAGG 1 cut(s) 596
BamHI GGATCC 1 cut(s) 283
BanI GGYRCC 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 54, 57
BcgI CGANNNNNNTGC 4 cut(s) 94, 128, 185, 219
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 3 cut(s) 102, 260, 609
BfoI RGCGCY 2 cut(s) 358, 376
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 3 cut(s) 43, 46, 201
BlsI GCNGC 3 cut(s) 44, 47, 202
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 285, 424
BmsI GCATC 1 cut(s) 503
BpiI GAAGAC 1 cut(s) 103
Bpu10I CCTNAGC 1 cut(s) 288
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 1 cut(s) 15
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 228
Bse21I CCTNAGG 1 cut(s) 596
Bse3DI GCAATG 1 cut(s) 233
Bse8I GATNNNNATC 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 106, 228
BseMI GCAATG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 54, 57
BseYI CCCAGC 2 cut(s) 357, 503
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 2 cut(s) 614, 631
BslI CCNNNNNNNGG 2 cut(s) 106, 228
BsmFI GGGAC 2 cut(s) 614, 631
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 204
Bsp119I TTCGAA 1 cut(s) 114
Bsp143I GATC 2 cut(s) 277, 283
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 285, 424
BspPI GGATC 2 cut(s) 278, 291
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 2 cut(s) 277, 283
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 1 cut(s) 15
Bst4CI ACNGT 3 cut(s) 109, 324, 551
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 130
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 198, 211, 235
BstDEI CTNAG 4 cut(s) 21, 288, 379, 596
BstDSI CCRYGG 1 cut(s) 15
BstH2I RGCGCY 2 cut(s) 358, 376
BstHHI GCGC 3 cut(s) 357, 375, 684
BstKTI GATC 2 cut(s) 280, 286
BstMBI GATC 2 cut(s) 277, 283
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstSNI TACGTA 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 54, 57
BstV2I GAAGAC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 596
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 297, 556
Cac8I GCNNGC 3 cut(s) 198, 211, 235
CfoI GCGC 3 cut(s) 357, 375, 684
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 131, 257, 274
CviAII CATG 1 cut(s) 16
CviQI GTAC 3 cut(s) 131, 257, 274
DdeI CTNAG 4 cut(s) 21, 288, 379, 596
DpnI GATC 2 cut(s) 279, 285
DpnII GATC 2 cut(s) 277, 283
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 15
Eco47III AGCGCT 2 cut(s) 356, 374
Eco81I CCTNAGG 1 cut(s) 596
Eco88I CYCGRG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 19
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 614, 631
FatI CATG 1 cut(s) 15
FauNDI CATATG 1 cut(s) 239
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 43, 46, 201
Fsp4HI GCNGC 3 cut(s) 43, 46, 201
FspBI CTAG 3 cut(s) 102, 260, 609
FspI TGCGCA 1 cut(s) 683
GlaI GCGC 3 cut(s) 356, 374, 683
GluI GCNGC 3 cut(s) 43, 46, 201
GsaI CCCAGC 2 cut(s) 361, 507
HaeII RGCGCY 2 cut(s) 358, 376
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 254
HhaI GCGC 3 cut(s) 357, 375, 684
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 3 cut(s) 355, 373, 682
HinP1I GCGC 3 cut(s) 355, 373, 682
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 525
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 281, 337
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 2 cut(s) 532, 635
HpyCH4III ACNGT 3 cut(s) 109, 324, 551
HpyCH4IV ACGT 4 cut(s) 35, 129, 462, 603
HpyCH4V TGCA 2 cut(s) 516, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 4 cut(s) 21, 288, 379, 596
HpySE526I ACGT 4 cut(s) 35, 129, 462, 603
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 3 cut(s) 355, 373, 682
Kzo9I GATC 2 cut(s) 277, 283
LpnPI CCDG 7 cut(s) 24, 156, 223, 266, 267, 343, 489
Lsp1109I GCAGC 2 cut(s) 54, 57
LweI GCATC 1 cut(s) 503
MaeI CTAG 3 cut(s) 102, 260, 609
MaeII ACGT 4 cut(s) 35, 129, 462, 603
MaeIII GTNAC 1 cut(s) 604
MalI GATC 2 cut(s) 279, 285
MbiI CCGCTC 1 cut(s) 203
MboI GATC 2 cut(s) 277, 283
MboII GAAGA 2 cut(s) 37, 103
MflI RGATCY 1 cut(s) 283
MluCI AATT 5 cut(s) 137, 346, 667, 685, 714
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 558
MnlI CCTC 3 cut(s) 176, 262, 659
MseI TTAA 2 cut(s) 465, 724
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 206
NcoI CCATGG 1 cut(s) 15
NdeI CATATG 1 cut(s) 239
NdeII GATC 2 cut(s) 277, 283
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 285, 424
NmeAIII GCCGAG 2 cut(s) 292, 389
NmuCI GTSAC 1 cut(s) 604
NsbI TGCGCA 1 cut(s) 683
NspV TTCGAA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 273
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 3 cut(s) 44, 47, 202
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 130
Psp1406I AACGTT 1 cut(s) 462
PspFI CCCAGC 2 cut(s) 357, 503
PspN4I GGNNCC 2 cut(s) 285, 424
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 3 cut(s) 132, 258, 275
RsaNI GTAC 3 cut(s) 131, 257, 274
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 465, 724
SatI GCNGC 3 cut(s) 43, 46, 201
Sau3AI GATC 2 cut(s) 277, 283
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 50
SetI ASST 9 cut(s) 38, 50, 132, 150, 265, 465, 505, 524, 606
SfaNI GCATC 1 cut(s) 503
SfuI TTCGAA 1 cut(s) 114
SmlI CTYRAG 2 cut(s) 439, 709
SmoI CTYRAG 2 cut(s) 439, 709
SnaBI TACGTA 1 cut(s) 130
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 5 cut(s) 137, 346, 667, 685, 714
SsiI CCGC 1 cut(s) 201
SspMI CTAG 3 cut(s) 102, 260, 609
StyI CCWWGG 1 cut(s) 15
TaaI ACNGT 3 cut(s) 109, 324, 551
TaiI ACGT 4 cut(s) 38, 132, 465, 606
TaqI TCGA 3 cut(s) 114, 120, 267
TasI AATT 5 cut(s) 137, 346, 667, 685, 714
TauI GCSGC 1 cut(s) 203
Tru1I TTAA 2 cut(s) 465, 724
Tru9I TTAA 2 cut(s) 465, 724
TscAI CASTG 2 cut(s) 304, 556
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 2 cut(s) 42, 45
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 3 cut(s) 99, 316, 416
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 304, 556
Van91I CCANNNNNTGG 1 cut(s) 228
XapI RAATTY 1 cut(s) 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 3 cut(s) 102, 260, 609
ZraI GACGTC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.