Prupe.5G075500_v2.0.a1

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015990
Physical Location & Seq
Forward (+)
8947898 .. 8953235
5338 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G075500.1

Sequence Viewer

Length: 1170 bp
ATGTCAGTCTCTTTGCAATCTCCGCCCTCTTCAGCTGTCTCGTCTTTCCAGGGAACAAGGCTGAGGTTTTCCAATGGATCTCCAGCTTCCAATCTGCTCTTCAACTTCCAGCGATCATTTCCTGTCATTCGGGCCTCCGCTCTCGACACCGGTTCAACCACAGAATTGGACCTCGTCTCTAGCTTCAGTGAGATCGTTCCAGACACCGTCATTTTCGATGACTTCGAGAGGTTTCCTCCAACCGCTGCTACAGTGAGCTCTTCCCTACTCTTGGGTATATGTAGCCTCCCTGACACCATATTTAGAAATGCTGTGGATATGGCATTGGCGGATTCAGAGTGTAATAAGCATGAAAACTCCGAATTGAGATTGTCATGTTTCAGTAACAAGGCTTTAGTGAATGTTGGTGGTTATTTGGCGAAACTAGTTCCTGGCCGAGTGTCTACTGAGGTGGATGCACGTCTTGCTTATGACACGCATGGCATTATCAGAAAGGTGCATGACTTGCTGAAGTTGTACAATGAAGTTAATGTTCCTCCTGAGCGTTTGTTGTTCAAAATTCCTTCAACTTGGCAAGGAATTGAAGCTTCAAGATTACTAGAATCTGAGGGCATACAGACGCATTTGACATTTGTGTACAGCTTTGCTCAAGCTGCAGCTGCAGCCCAAGCTGGCGCTTCTGTTATTCAGATTTTTGTTGGCCGTCTTAGGGATTGGTCTCGCAACCATTCTGGTGACCCTGAGATAGAAGCTGCTCTCAAGAGAGGGGAGGATCCTGGGTTAGCCTTGGTGACGAAGGCGTATAACTACATCCACAAATATGGACATAAATCAAAGTTAATGGCAGCAGCAGTTCGGAATAAGCAGGATTTGTTCAGTCTCTTGGGGGTTGACTACATCATTGCACCACTGAAGGTATTGCAGTCACTCAAAGAATCAATCACTACCCCCGAAGAGAAGTATTCTTTCGTCAGGAGGCTATCTCCACAATCTGCTGCCATCTACAAGTTCAGTGAAGAAGAGCTTGTCAAGTGGGACCAATTAAGCTTTGCATCAGCTGTGGGACCTGCAGCCGTGGAGCTTCTGGCCAGTGGACTAGATGGTTATGCTAATCAAGCAAATCGAGTTGAGGAATTATTTGAGAAAATTTGGCCACCTCCAAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

390

Amino Acids

42.7

Weight (kDa)

5.88

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12230 AT1G12230
fragaria_vesca FvH4_5g00280
malus_domestica MD06G1067000.v1.1
prunus_persica Prupe.5G075500_v2.0.a1
pyrus_communis pycom06g05960
rosa_chinensis RchiOBHm_Chr7g0202331
rosa_laevigata RLG00000003608
rosa_multiflora Rmu_sc0000266.1_g000004
rosa_roxburghii Rroxscaffold_3G00254660
rosa_rugosa Rorug07G0069900
rosa_samantha Rh7BG198400 Rh7CG208400 Rh7DG204100
rosa_wichuraiana Rw7G017290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1075
AccBSI CCGCTC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 443
AciI CCGC 4 cut(s) 23, 138, 243, 329
AclWI GGATC 3 cut(s) 85, 767, 780
AcoI YGGCCR 4 cut(s) 433, 700, 1086, 1151
AcsI RAATTY 2 cut(s) 558, 1146
AcuI CTGAAG 4 cut(s) 15, 169, 530, 932
AfaI GTAC 2 cut(s) 518, 638
AfiI CCNNNNNNNGG 2 cut(s) 271, 709
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 6 cut(s) 103, 156, 556, 567, 584, 591
AhlI ACTAGT 1 cut(s) 424
AjiI CACGTC 1 cut(s) 461
AjnI CCWGG 3 cut(s) 48, 430, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 5 cut(s) 13, 43, 181, 723, 884
AlwI GGATC 3 cut(s) 85, 767, 780
AoxI GGCC 5 cut(s) 132, 433, 700, 1086, 1151
ApoI RAATTY 2 cut(s) 558, 1146
AsiGI ACCGGT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 4 cut(s) 132, 169, 1036, 1064
AsuHPI GGTGA 2 cut(s) 746, 802
AvaII GGWCC 3 cut(s) 169, 1036, 1064
BalI TGGCCA 2 cut(s) 1088, 1153
BamHI GGATCC 1 cut(s) 772
BanII GRGCYC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 1007, 1094
BceAI ACGGC 2 cut(s) 687, 1058
BciT130I CCWGG 3 cut(s) 50, 432, 777
BcoDI GTCTC 5 cut(s) 13, 43, 181, 723, 884
BcuI ACTAGT 1 cut(s) 424
BfaI CTAG 4 cut(s) 180, 425, 599, 1097
BfmI CTRYAG 4 cut(s) 249, 654, 660, 1068
BfoI RGCGCY 1 cut(s) 678
BfuAI ACCTGC 1 cut(s) 1075
Bme1390I CCNGG 3 cut(s) 50, 432, 777
Bme18I GGWCC 3 cut(s) 169, 1036, 1064
BmgBI CACGTC 1 cut(s) 461
BmgT120I GGNCC 4 cut(s) 132, 169, 1036, 1064
BmiI GGNNCC 3 cut(s) 774, 1037, 1065
BmrFI CCNGG 3 cut(s) 50, 432, 777
BmsI GCATC 2 cut(s) 445, 1061
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 967, 999
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 2 cut(s) 62, 540
BpuEI CTTGAG 2 cut(s) 633, 743
BsaI GGTCTC 1 cut(s) 723
BsaJI CCNNGG 4 cut(s) 49, 776, 786, 1074
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 271, 709
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 1089
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 3 cut(s) 50, 432, 777
BseDI CCNNGG 4 cut(s) 49, 776, 786, 1074
BseGI GGATG 2 cut(s) 460, 810
BseLI CCNNNNNNNGG 2 cut(s) 271, 709
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 5 cut(s) 53, 438, 531, 597, 732
BseNI ACTGG 1 cut(s) 1089
BshFI GGCC 5 cut(s) 134, 435, 702, 1088, 1153
BshTI ACCGGT 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 2 cut(s) 1049, 1077
BslI CCNNNNNNNGG 2 cut(s) 271, 709
BsmAI GTCTC 5 cut(s) 13, 43, 181, 723, 884
BsmBI CGTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 1049, 1077
BsnI GGCC 5 cut(s) 134, 435, 702, 1088, 1153
Bso31I GGTCTC 1 cut(s) 723
Bsp1286I GDGCHC 1 cut(s) 260
Bsp1407I TGTACA 2 cut(s) 516, 636
Bsp143I GATC 4 cut(s) 77, 113, 192, 772
BspACI CCGC 4 cut(s) 23, 138, 243, 329
BspANI GGCC 5 cut(s) 134, 435, 702, 1088, 1153
BspCNI CTCAG 5 cut(s) 54, 439, 532, 598, 733
BspLI GGNNCC 3 cut(s) 774, 1037, 1065
BspMAI CTGCAG 3 cut(s) 658, 664, 1072
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 3 cut(s) 85, 767, 780
BspQI GCTCTTC 3 cut(s) 104, 265, 1014
BspTNI GGTCTC 1 cut(s) 723
BsrBI CCGCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 900
BsrFI RCCGGY 1 cut(s) 149
BsrGI TGTACA 2 cut(s) 516, 636
BsrI ACTGG 1 cut(s) 1089
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 49, 776, 786, 1074
BssMI GATC 4 cut(s) 77, 113, 192, 772
BssT1I CCWWGG 1 cut(s) 786
Bst2UI CCWGG 3 cut(s) 50, 432, 777
Bst4CI ACNGT 2 cut(s) 208, 253
Bst6I CTCTTC 5 cut(s) 34, 104, 265, 948, 1014
BstAPI GCANNNNNTGC 2 cut(s) 464, 505
BstAUI TGTACA 2 cut(s) 516, 636
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 6 cut(s) 62, 447, 540, 606, 707, 741
BstDSI CCRYGG 1 cut(s) 1074
BstEII GGTNACC 1 cut(s) 734
BstF5I GGATG 2 cut(s) 460, 810
BstH2I RGCGCY 1 cut(s) 678
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 4 cut(s) 80, 116, 195, 775
BstMAI GTCTC 5 cut(s) 13, 43, 181, 723, 884
BstMBI GATC 4 cut(s) 77, 113, 192, 772
BstMWI GCNNNNNNNGC 8 cut(s) 22, 464, 505, 653, 659, 662, 668, 1115
BstNI CCWGG 3 cut(s) 50, 432, 777
BstPI GGTNACC 1 cut(s) 734
BstSCI CCNGG 3 cut(s) 48, 430, 775
BstSFI CTRYAG 4 cut(s) 249, 654, 660, 1068
BstX2I RGATCY 2 cut(s) 77, 772
BstXI CCANNNNNNTGG 2 cut(s) 166, 821
BstYI RGATCY 2 cut(s) 77, 772
BsuRI GGCC 5 cut(s) 134, 435, 702, 1088, 1153
BtgI CCRYGG 1 cut(s) 1074
BtrI CACGTC 1 cut(s) 461
BtsCI GGATG 2 cut(s) 460, 810
BtsIMutI CAGTG 5 cut(s) 193, 258, 908, 1018, 1096
BveI ACCTGC 1 cut(s) 1075
Cac8I GCNNGC 1 cut(s) 673
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 4 cut(s) 132, 169, 1036, 1064
CseI GACGC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 517, 637
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 4 cut(s) 350, 375, 479, 500
CviQI GTAC 2 cut(s) 517, 637
DdeI CTNAG 6 cut(s) 62, 447, 540, 606, 707, 741
DpnI GATC 4 cut(s) 79, 115, 194, 774
DpnII GATC 4 cut(s) 77, 113, 192, 772
EaeI YGGCCR 4 cut(s) 433, 700, 1086, 1151
Eam1104I CTCTTC 5 cut(s) 34, 104, 265, 948, 1014
EarI CTCTTC 5 cut(s) 34, 104, 265, 948, 1014
EciI GGCGGA 2 cut(s) 12, 344
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 723
Eco47I GGWCC 3 cut(s) 169, 1036, 1064
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 4 cut(s) 15, 169, 530, 932
Eco91I GGTNACC 1 cut(s) 734
EcoICRI GAGCTC 1 cut(s) 258
EcoO109I RGGNCCY 1 cut(s) 1064
EcoO65I GGTNACC 1 cut(s) 734
EcoRII CCWGG 3 cut(s) 48, 430, 775
EcoT14I CCWWGG 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 786
Esp3I CGTCTC 1 cut(s) 181
FaeI CATG 4 cut(s) 353, 378, 482, 503
FalI AAGNNNNNCTT 2 cut(s) 1008, 1040
FaqI GGGAC 2 cut(s) 1049, 1077
FatI CATG 4 cut(s) 349, 374, 478, 499
FblI GTMKAC 1 cut(s) 443
FokI GGATG 2 cut(s) 467, 797
FriOI GRGCYC 1 cut(s) 260
FspBI CTAG 4 cut(s) 180, 425, 599, 1097
GlaI GCGC 1 cut(s) 676
GsuI CTGGAG 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 678
HaeIII GGCC 5 cut(s) 134, 435, 702, 1088, 1153
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 628
HhaI GCGC 1 cut(s) 677
Hin1II CATG 4 cut(s) 353, 378, 482, 503
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HindIII AAGCTT 2 cut(s) 585, 1045
HinfI GANTC 3 cut(s) 332, 602, 935
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 746, 802
Hpy166II GTNNAC 4 cut(s) 444, 637, 892, 1094
Hpy188I TCNGA 6 cut(s) 337, 361, 491, 607, 690, 858
Hpy188III TCNNGA 7 cut(s) 143, 200, 226, 539, 591, 760, 973
Hpy8I GTNNAC 4 cut(s) 444, 637, 892, 1094
HpyAV CCTTC 3 cut(s) 573, 790, 907
HpyCH4III ACNGT 2 cut(s) 208, 253
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 9 cut(s) 16, 458, 499, 656, 662, 905, 922, 1052, 1070
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 464, 505, 653, 659, 662, 668, 1115
HpyF3I CTNAG 6 cut(s) 62, 447, 540, 606, 707, 741
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 4 cut(s) 353, 378, 482, 503
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 4 cut(s) 77, 113, 192, 772
LguI GCTCTTC 3 cut(s) 104, 265, 1014
LmnI GCTCC 1 cut(s) 1078
LweI GCATC 2 cut(s) 445, 1061
MaeI CTAG 4 cut(s) 180, 425, 599, 1097
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 4 cut(s) 383, 734, 790, 924
MalI GATC 4 cut(s) 79, 115, 194, 774
MbiI CCGCTC 1 cut(s) 140
MboI GATC 4 cut(s) 77, 113, 192, 772
MboII GAAGA 6 cut(s) 21, 91, 252, 965, 1028, 1031
MflI RGATCY 2 cut(s) 77, 772
MhlI GDGCHC 1 cut(s) 260
MlsI TGGCCA 2 cut(s) 1088, 1153
MluCI AATT 7 cut(s) 164, 362, 558, 579, 1040, 1133, 1146
MluNI TGGCCA 2 cut(s) 1088, 1153
MmeI TCCRAC 1 cut(s) 263
Mox20I TGGCCA 2 cut(s) 1088, 1153
MscI TGGCCA 2 cut(s) 1088, 1153
MseI TTAA 3 cut(s) 528, 839, 1043
MslI CAYNNNNRTG 2 cut(s) 732, 819
Msp20I TGGCCA 2 cut(s) 1088, 1153
MspA1I CMGCKG 4 cut(s) 35, 245, 659, 1058
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 50, 432, 777
MvaI CCWGG 3 cut(s) 50, 432, 777
MwoI GCNNNNNNNGC 8 cut(s) 22, 464, 505, 653, 659, 662, 668, 1115
NdeII GATC 4 cut(s) 77, 113, 192, 772
NlaIII CATG 4 cut(s) 353, 378, 482, 503
NlaIV GGNNCC 3 cut(s) 774, 1037, 1065
NmeAIII GCCGAG 1 cut(s) 461
NmuCI GTSAC 3 cut(s) 734, 790, 924
PciSI GCTCTTC 3 cut(s) 104, 265, 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 3 cut(s) 332, 602, 935
PflFI GACNNNGTC 2 cut(s) 173, 206
PinAI ACCGGT 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 1064
Psp124BI GAGCTC 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 1064
Psp6I CCWGG 3 cut(s) 48, 430, 775
PspEI GGTNACC 1 cut(s) 734
PspGI CCWGG 3 cut(s) 48, 430, 775
PspN4I GGNNCC 3 cut(s) 774, 1037, 1065
PspPI GGNCC 4 cut(s) 132, 169, 1036, 1064
PspPPI RGGWCCY 1 cut(s) 1064
PstI CTGCAG 3 cut(s) 658, 664, 1072
PsuI RGATCY 2 cut(s) 77, 772
PsyI GACNNNGTC 2 cut(s) 173, 206
PvuII CAGCTG 3 cut(s) 35, 659, 1058
RsaI GTAC 2 cut(s) 518, 638
RsaNI GTAC 2 cut(s) 517, 637
RseI CAYNNNNRTG 2 cut(s) 732, 819
SacI GAGCTC 1 cut(s) 260
SapI GCTCTTC 3 cut(s) 104, 265, 1014
SaqAI TTAA 3 cut(s) 528, 839, 1043
Sau3AI GATC 4 cut(s) 77, 113, 192, 772
Sau96I GGNCC 4 cut(s) 132, 169, 1036, 1064
ScrFI CCNGG 3 cut(s) 50, 432, 777
SduI GDGCHC 1 cut(s) 260
SfaNI GCATC 2 cut(s) 445, 1061
SfcI CTRYAG 4 cut(s) 249, 654, 660, 1068
SinI GGWCC 3 cut(s) 169, 1036, 1064
SmiMI CAYNNNNRTG 2 cut(s) 732, 819
SmlI CTYRAG 2 cut(s) 648, 758
SmoI CTYRAG 2 cut(s) 648, 758
SpeI ACTAGT 1 cut(s) 424
Sse9I AATT 7 cut(s) 164, 362, 558, 579, 1040, 1133, 1146
SsiI CCGC 4 cut(s) 23, 138, 243, 329
SspMI CTAG 4 cut(s) 180, 425, 599, 1097
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 3 cut(s) 48, 430, 775
StyI CCWWGG 1 cut(s) 786
TaaI ACNGT 2 cut(s) 208, 253
TaiI ACGT 1 cut(s) 463
TaqI TCGA 4 cut(s) 144, 216, 225, 1123
TasI AATT 7 cut(s) 164, 362, 558, 579, 1040, 1133, 1146
TatI WGTACW 2 cut(s) 516, 636
TfiI GAWTC 3 cut(s) 332, 602, 935
Tru1I TTAA 3 cut(s) 528, 839, 1043
Tru9I TTAA 3 cut(s) 528, 839, 1043
TscAI CASTG 5 cut(s) 193, 258, 915, 1018, 1096
TseFI GTSAC 3 cut(s) 734, 790, 924
Tsp45I GTSAC 3 cut(s) 734, 790, 924
TspDTI ATGAA 2 cut(s) 366, 537
TspRI CASTG 5 cut(s) 193, 258, 915, 1018, 1096
Tth111I GACNNNGTC 2 cut(s) 173, 206
VpaK11BI GGWCC 3 cut(s) 169, 1036, 1064
XapI RAATTY 2 cut(s) 558, 1146
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 4 cut(s) 180, 425, 599, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.