AT1G12845

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017545
Physical Location & Seq
Reverse (-)
4378832 .. 4379607
776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12845.1

Sequence Viewer

Length: 360 bp
ATGGCTCTGTTTTCTAGCGTCTCAGTTTCCGCGTTTCTCTTGATCGTTGTATCGGTTCAATGGACTCTGGTTTGCAGTGAATCCACAATCTTAGCTTCTCCTGCTGTTTTACCGTATATCAATGCACCAGATATGTCTTCATTTTTCCCTTCTCCGACCAAAGACTGGCCAATAGAGACAGCGACATCTCCTGTTCCAGAACCAGAAGCGCCTGGTCCAAGCTCAGGCCAGCTTAATGGGAAGATTTCAGGCAGATCAATGCGGCTCCATCCTGATATTTCCTTGGTTCTAGCCATTGTTGGGATCTGTACCTTTCTATGTTTTAATGAACCAATACTTGTTAGGTTTCTACACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.82

Weight (kDa)

5.08

Isoelectric Point (pI)

63.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12845
malus_domestica MD09G1004200.v1.1
prunus_persica Prupe.3G312500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0176391
rosa_laevigata RLG00000022409
rosa_multiflora Rmu_sc0009140.1_g000004
rosa_roxburghii Rroxscaffold_2G00076500
rosa_samantha Rh2AG672300 Rh2BG683800 Rh2CG646500 Rh2DG697300
rosa_wichuraiana Rw2G055140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 1 cut(s) 32
AciI CCGC 2 cut(s) 30, 262
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 1 cut(s) 167
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 3 cut(s) 165, 224, 300
AgsI TTSAA 1 cut(s) 59
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 95, 222, 232
AluI AGCT 3 cut(s) 95, 222, 232
Alw26I GTCTC 2 cut(s) 25, 170
AlwI GGATC 1 cut(s) 311
AoxI GGCC 2 cut(s) 167, 226
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 25, 170
BfaI CTAG 2 cut(s) 15, 290
BfoI RGCGCY 1 cut(s) 212
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 224, 300
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 3 cut(s) 165, 224, 300
BseMII CTCAG 2 cut(s) 36, 237
BseNI ACTGG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 2 cut(s) 169, 228
BslI CCNNNNNNNGG 3 cut(s) 165, 224, 300
BsmAI GTCTC 2 cut(s) 25, 170
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 169, 228
Bsp143I GATC 3 cut(s) 42, 254, 303
BspACI CCGC 2 cut(s) 30, 262
BspANI GGCC 2 cut(s) 169, 228
BspCNI CTCAG 2 cut(s) 35, 236
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 42, 254, 303
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 3 cut(s) 22, 91, 223
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 212
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 45, 257, 306
BstMAI GTCTC 2 cut(s) 25, 170
BstMBI GATC 3 cut(s) 42, 254, 303
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstUI CGCG 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 2 cut(s) 169, 228
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 230
CfoI GCGC 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 309
CviJI RGCY 8 cut(s) 5, 95, 169, 222, 228, 232, 265, 293
CviKI_1 RGCY 8 cut(s) 5, 95, 169, 222, 228, 232, 265, 293
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 22, 91, 223
DpnI GATC 3 cut(s) 44, 256, 305
DpnII GATC 3 cut(s) 42, 254, 303
EaeI YGGCCR 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 25
FaiI YATR 3 cut(s) 117, 134, 319
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 2 cut(s) 15, 290
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 212
HaeIII GGCC 2 cut(s) 169, 228
HgaI GACGC 1 cut(s) 7
HhaI GCGC 1 cut(s) 211
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 2 cut(s) 64, 80
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 3 cut(s) 40, 197, 272
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 75, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 22, 91, 223
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 3 cut(s) 42, 254, 303
LmnI GCTCC 1 cut(s) 270
MaeI CTAG 2 cut(s) 15, 290
MalI GATC 3 cut(s) 44, 256, 305
MboI GATC 3 cut(s) 42, 254, 303
MboII GAAGA 2 cut(s) 129, 253
MflI RGATCY 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 169
MluNI TGGCCA 1 cut(s) 169
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 179
Mox20I TGGCCA 1 cut(s) 169
MscI TGGCCA 1 cut(s) 169
MseI TTAA 2 cut(s) 234, 324
Msp20I TGGCCA 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 3 cut(s) 42, 254, 303
NlaIV GGNNCC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 234, 324
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 3 cut(s) 42, 254, 303
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 213
SetI ASST 5 cut(s) 97, 224, 234, 314, 347
SinI GGWCC 1 cut(s) 215
SsiI CCGC 2 cut(s) 30, 262
SspMI CTAG 2 cut(s) 15, 290
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 114
TauI GCSGC 1 cut(s) 265
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 234, 324
Tru9I TTAA 2 cut(s) 234, 324
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 129, 342
TspRI CASTG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 215
XspI CTAG 2 cut(s) 15, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.