MD09G1004200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0017545
Physical Location & Seq
Forward (+)
363698 .. 364103
406 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1004200.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGCTCTGTCATCGAGTGTGGTGCCAACGATTTCAGCTTCTCCAGCGGTTTTACCAAATGGAAATCCGCCCAGTAACAATATGTCGTCCTTCTTCCCTTCTCCAAGTGATGAAGCTTCTAATGCGTCAGATGCATTTGCACCAGTCCCTAGCTCTGGCCAGTTTGTTGGCAAAGTTTCATCCGCCGCTAACTCCAACTCCGACCGTCAGTGCGGTGCTCTAATGTTTGGTGCAGGGCTTTCTGCCTTGTTTCTCTTCAAATTTGCCAATGCTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

9.17

Weight (kDa)

4.68

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12845
malus_domestica MD09G1004200.v1.1
prunus_persica Prupe.3G312500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0176391
rosa_laevigata RLG00000022409
rosa_multiflora Rmu_sc0009140.1_g000004
rosa_roxburghii Rroxscaffold_2G00076500
rosa_samantha Rh2AG672300 Rh2BG683800 Rh2CG646500 Rh2DG697300
rosa_wichuraiana Rw2G055140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AciI CCGC 5 cut(s) 47, 68, 183, 186, 213
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 3 cut(s) 38, 116, 153
AluI AGCT 3 cut(s) 38, 116, 153
Alw21I GWGCWC 1 cut(s) 220
AoxI GGCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 1 cut(s) 260
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 259
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BfaI CTAG 1 cut(s) 150
BisI GCNGC 2 cut(s) 186, 273
BlsI GCNGC 2 cut(s) 187, 274
BmiI GGNNCC 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 72, 143, 160
BseGI GGATG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 155
BseNI ACTGG 3 cut(s) 72, 143, 160
BseXI GCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 220
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 220
BspACI CCGC 5 cut(s) 47, 68, 183, 186, 213
BspANI GGCC 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 22
BsrI ACTGG 3 cut(s) 72, 143, 160
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 179
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 4 cut(s) 44, 122, 131, 272
BstV1I GCAGC 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 159
BtsCI GGATG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 215
CseI GACGC 1 cut(s) 114
CviJI RGCY 6 cut(s) 5, 38, 116, 153, 159, 238
CviKI_1 RGCY 6 cut(s) 5, 38, 116, 153, 159, 238
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 2 cut(s) 57, 172
EcoT22I ATGCAT 1 cut(s) 136
FaiI YATR 1 cut(s) 83
FaqI GGGAC 1 cut(s) 131
Fnu4HI GCNGC 2 cut(s) 186, 273
FokI GGATG 1 cut(s) 166
Fsp4HI GCNGC 2 cut(s) 186, 273
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 186, 273
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 159
HgaI GACGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 130, 202
HpyAV CCTTC 2 cut(s) 100, 108
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 3 cut(s) 134, 140, 233
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 122, 131, 272
LpnPI CCDG 6 cut(s) 57, 85, 141, 156, 173, 219
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 2 cut(s) 85, 247
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 159
MmeI TCCRAC 2 cut(s) 219, 225
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 136
MscI TGGCCA 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 47
MwoI GCNNNNNNNGC 4 cut(s) 44, 122, 131, 272
NlaIV GGNNCC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 136
PkrI GCNGC 2 cut(s) 187, 274
PspN4I GGNNCC 1 cut(s) 24
SatI GCNGC 2 cut(s) 186, 273
SduI GDGCHC 1 cut(s) 220
SetI ASST 3 cut(s) 40, 118, 155
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 1 cut(s) 260
SsiI CCGC 5 cut(s) 47, 68, 183, 186, 213
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 188
TscAI CASTG 1 cut(s) 215
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 126, 168
TspRI CASTG 1 cut(s) 215
XapI RAATTY 1 cut(s) 260
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.