Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0020983

Physical Location & Seq

Genomic Coordinates Reverse (-)

5453245 .. 5454088

Gene Structure 844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G15850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCTACTTCCGGTGATAAAGCCACCTCTAGCACCAATAACCCTAACAACTCCTACGAGATTACTCCACCAGCCACCGACTCTATTTCGAGCTTAAGTTTTAGTCCAAAGGCCGATATACTTGTGGCAACTTCATGGGATTGTCAGGTGAGATGTTGGGAAATAACCCGTAGTGACGGCTCTATAGCCAGTGAACCAAAGGTATCAATGTCTCATGATCAGCCGGTTTTGTGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTACCGGAGGATGTGATAAGCAGGCAAAAATGTGGCCATTGTTGTCTGGTGCTCAACCATCTACTGTTGCTATGCACGATGCTCCTTTCAATCAGATAGCTTGGATCCCTGGAATGAATCTCCTTGTTACTGGAAGCTGGGATAAAACTTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000972 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005829 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0031461 GO:0031967 GO:0031975 GO:0032182 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080008 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

WD40

Protein Analysis

140

Amino Acids

15.06

Weight (kDa)

4.91

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	25 - 134	8.1e-08	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	25 - 137	1.1e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5	PF25175	26 - 139	4.8e-14	WDR5 beta-propeller domain
WDR55	PF24796	26 - 138	1.3e-07	WDR55
Beta-prop_THOC3	PF25174	27 - 139	8.9e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	27 - 140	3.6e-11	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	42 - 138	7.8e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	76 - 140	2.2e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15850
rosa_chinensis	RchiOBHm_Chr6g0265371
rosa_multiflora	Rmu_co8307623.1_g000001
rosa_samantha	Rh3BG217900
rosa_wichuraiana	Rw6G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	364, 377
AcoI	YGGCCR	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	355, 418
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	3 cut(s)	93, 365, 402
AluI	AGCT	3 cut(s)	93, 365, 402
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	364, 377
AoxI	GGCC	2 cut(s)	111, 299
AsuHPI	GGTGA	2 cut(s)	26, 160
BalI	TGGCCA	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	2 cut(s)	245, 331
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	1 cut(s)	183
BfrI	CTTAAG	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	256, 371
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	2 cut(s)	11, 269
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	189, 400
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	189, 400
BseYI	CCCAGC	1 cut(s)	402
BshFI	GGCC	2 cut(s)	113, 301
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	3 cut(s)	12, 224, 270
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	113, 301
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	2 cut(s)	217, 369
BspANI	GGCC	2 cut(s)	113, 301
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	256, 371
BspPI	GGATC	2 cut(s)	364, 377
BspTI	CTTAAG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	2 cut(s)	189, 400
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	217, 369
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	262, 331
BstAFI	CTTAAG	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	220, 372
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	217, 369
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	113, 301
BtsCI	GGATG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	223
CviAII	CATG	2 cut(s)	135, 215
DpnI	GATC	2 cut(s)	219, 371
DpnII	GATC	2 cut(s)	217, 369
EaeI	YGGCCR	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	373
FaeI	CATG	2 cut(s)	138, 218
FaiI	YATR	5 cut(s)	119, 136, 185, 216, 338
FatI	CATG	2 cut(s)	134, 214
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	5
FokI	GGATG	1 cut(s)	288
FspBI	CTAG	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	2 cut(s)	113, 301
HapII	CCGG	3 cut(s)	12, 224, 270
Hin1II	CATG	2 cut(s)	138, 218
HinfI	GANTC	2 cut(s)	80, 382
HpaII	CCGG	3 cut(s)	12, 224, 270
HphI	GGTGA	2 cut(s)	26, 160
Hpy166II	GTNNAC	2 cut(s)	6, 194
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	2 cut(s)	6, 194
HpyCH4III	ACNGT	2 cut(s)	262, 331
HpyCH4V	TGCA	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	138, 218
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 369
LmnI	GCTCC	1 cut(s)	352
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	173, 391
MalI	GATC	2 cut(s)	219, 371
MboI	GATC	2 cut(s)	217, 369
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	1 cut(s)	319
MlsI	TGGCCA	1 cut(s)	301
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	37, 266
Mox20I	TGGCCA	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	301
MspCI	CTTAAG	1 cut(s)	94
MspI	CCGG	3 cut(s)	12, 224, 270
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
NdeII	GATC	2 cut(s)	217, 369
NlaIII	CATG	2 cut(s)	138, 218
NlaIV	GGNNCC	2 cut(s)	256, 371
NmuCI	GTSAC	1 cut(s)	173
PagI	TCATGA	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	256, 371
PsuI	RGATCY	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	95
Sau3AI	GATC	2 cut(s)	217, 369
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	6 cut(s)	29, 95, 150, 204, 367, 404
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	262, 331
TaqI	TCGA	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	123, 395
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.