Rh3BG217900

Rae1-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
19675371 .. 19676325
955 bp
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UTR
Exon/CDS
Intron
Rh3BG217900.1

Sequence Viewer

Length: 180 bp
ATGACTGTTGCTCTGCATGATGCCCCCATTAAAGACATGGCTGGGATCCCCAAGTTGAACCTCTTAGTCACTGGAAGCTTGGACAAGACTGTAAATTGGAGGTGCCAACATATGATTGGGAAGGCATGGCATGGTGATCTGTCATTCAATCTTACCAAGCTGTCAGTCGGTAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

6.47

Weight (kDa)

9.43

Isoelectric Point (pI)

-2.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15850
rosa_chinensis RchiOBHm_Chr6g0265371
rosa_multiflora Rmu_co8307623.1_g000001
rosa_samantha Rh3BG217900
rosa_wichuraiana Rw6G027590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AclWI GGATC 2 cut(s) 40, 53
AgsI TTSAA 2 cut(s) 58, 148
AluBI AGCT 2 cut(s) 78, 160
AluI AGCT 2 cut(s) 78, 160
AlwI GGATC 2 cut(s) 40, 53
AsuHPI GGTGA 1 cut(s) 146
BamHI GGATCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 102
BmiI GGNNCC 2 cut(s) 47, 104
BmsI GCATC 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 45, 136
BspLI GGNNCC 2 cut(s) 47, 104
BspPI GGATC 2 cut(s) 40, 53
BspT107I GGYRCC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 76
BssMI GATC 2 cut(s) 45, 136
Bst4CI ACNGT 2 cut(s) 7, 91
BstDEI CTNAG 1 cut(s) 64
BstKTI GATC 2 cut(s) 48, 139
BstMBI GATC 2 cut(s) 45, 136
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 69
CviAII CATG 4 cut(s) 17, 37, 126, 131
CviJI RGCY 4 cut(s) 41, 78, 160, 175
CviKI_1 RGCY 4 cut(s) 41, 78, 160, 175
DdeI CTNAG 1 cut(s) 64
DpnI GATC 2 cut(s) 47, 138
DpnII GATC 2 cut(s) 45, 136
FaeI CATG 4 cut(s) 20, 40, 129, 134
FaiI YATR 6 cut(s) 18, 38, 111, 113, 127, 132
FatI CATG 4 cut(s) 16, 36, 125, 130
FauNDI CATATG 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 45
Hin1II CATG 4 cut(s) 20, 40, 129, 134
HindIII AAGCTT 1 cut(s) 76
HphI GGTGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 7, 91
HpyCH4V TGCA 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 64
Hsp92II CATG 4 cut(s) 20, 40, 129, 134
Kzo9I GATC 2 cut(s) 45, 136
LpnPI CCDG 2 cut(s) 27, 57
LweI GCATC 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 47, 138
MboI GATC 2 cut(s) 45, 136
MflI RGATCY 1 cut(s) 45
MluCI AATT 1 cut(s) 94
MnlI CCTC 2 cut(s) 71, 93
MseI TTAA 1 cut(s) 30
NdeI CATATG 1 cut(s) 111
NdeII GATC 2 cut(s) 45, 136
NlaIII CATG 4 cut(s) 20, 40, 129, 134
NlaIV GGNNCC 2 cut(s) 47, 104
NmuCI GTSAC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 47, 104
PsuI RGATCY 1 cut(s) 45
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 2 cut(s) 45, 136
SetI ASST 4 cut(s) 63, 80, 104, 162
SfaNI GCATC 1 cut(s) 10
Sse9I AATT 1 cut(s) 94
TaaI ACNGT 2 cut(s) 7, 91
TasI AATT 1 cut(s) 94
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspRI CASTG 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 2 cut(s) 34, 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.