Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0020983

Physical Location & Seq

Genomic Coordinates Reverse (-)

51464684 .. 51475931

Gene Structure 11248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G027590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAATCAACATAAAAGTTCTCAAAGATGCAGAGAAATTCACCCAATCGATCACAACTCATTCAAACTACTGCAAATTTTGAATTTTGCTAAAAACAACATAGATCAATGTAAACTTTCCACTTACAAACAACACAAAGAAGTATCAGAACGGGGTTGGCCAACTCTTGCTTCAGCTATGAGCAACCTCACTCCGGCTTTAACATTCATACTTGCCATCATCTTCAGACTCATATCATTGGCTACTAAAATGTGGTCCTTGGCTACTAGCCAAACAATGACTGTTGTTGTGCATGATGCCCCCATTAACGACATGGCAGGGATCCCCAAGTTGAACCTCTTAGTAAATGGAAGCTTGGACAAGACTGTAAAGTATACATGGGCTTTAACAGCATTATTTGCAGATGCAGTTGTATTCACGGTTATATTGGCAATCATGTCTTCGCTTTCTGGTTTTCTTTGGCCTCATCGTAGTTGGAGTCGTAGATTGAGAAGGATGAGGAAAAAGGCAATGATTGTGATGCCAGTAGATGAGAAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000972 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005829 GO:0006403 GO:0006405 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0017038 GO:0031461 GO:0031967 GO:0031975 GO:0032182 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0042886 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051276 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0080008 GO:0097159 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03013 ko05164 map03013 map05164

Pfam Domains

Protein Families

WD40

Protein Analysis

182

Amino Acids

20.72

Weight (kDa)

9.96

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15850
rosa_chinensis	RchiOBHm_Chr6g0265371
rosa_multiflora	Rmu_co8307623.1_g000001
rosa_samantha	Rh3BG217900
rosa_wichuraiana	Rw6G027590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	319, 332
AcoI	YGGCCR	1 cut(s)	161
AcsI	RAATTY	3 cut(s)	39, 78, 85
AcuI	CTGAAG	2 cut(s)	159, 211
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	67, 85, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
AluBI	AGCT	2 cut(s)	179, 357
AluI	AGCT	2 cut(s)	179, 357
AlwI	GGATC	2 cut(s)	319, 332
AoxI	GGCC	2 cut(s)	161, 464
ApoI	RAATTY	3 cut(s)	39, 78, 85
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	16, 35
AvaII	GGWCC	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	435
BccI	CCATC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	326
BmsI	GCATC	4 cut(s)	20, 289, 397, 513
BpiI	GAAGAC	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	519
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	504, 547
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMI	GCAATG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	163, 466
BshVI	ATCGAT	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	196
BsnI	GGCC	2 cut(s)	163, 466
Bsp143I	GATC	3 cut(s)	52, 106, 324
BspANI	GGCC	2 cut(s)	163, 466
BspDI	ATCGAT	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	2 cut(s)	319, 332
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	52, 106, 324
BssNAI	GTATAC	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	261
Bst1107I	GTATAC	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	286, 370, 424
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	343
BstF5I	GGATG	2 cut(s)	504, 547
BstKTI	GATC	3 cut(s)	55, 109, 327
BstMBI	GATC	3 cut(s)	52, 106, 324
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	163, 466
BsuTUI	ATCGAT	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	504, 547
Cfr13I	GGNCC	1 cut(s)	258
ClaI	ATCGAT	1 cut(s)	51
CviAII	CATG	4 cut(s)	296, 316, 381, 439
CviJI	RGCY	9 cut(s)	163, 179, 200, 245, 266, 273, 357, 386, 466
CviKI_1	RGCY	9 cut(s)	163, 179, 200, 245, 266, 273, 357, 386, 466
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	3 cut(s)	54, 108, 326
DpnII	GATC	3 cut(s)	52, 106, 324
EaeI	YGGCCR	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	2 cut(s)	159, 211
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	299, 319, 384, 442
FatI	CATG	4 cut(s)	295, 315, 380, 438
FblI	GTMKAC	1 cut(s)	377
FokI	GGATG	1 cut(s)	511
FspBI	CTAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	163, 466
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	4 cut(s)	299, 319, 384, 442
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	3 cut(s)	7, 231, 481
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	16, 35
Hpy166II	GTNNAC	2 cut(s)	116, 378
Hpy188I	TCNGA	2 cut(s)	151, 230
Hpy8I	GTNNAC	2 cut(s)	116, 378
HpyAV	CCTTC	2 cut(s)	489, 532
HpyCH4III	ACNGT	3 cut(s)	286, 370, 424
HpyCH4V	TGCA	5 cut(s)	33, 76, 295, 404, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	299, 319, 384, 442
Kzo9I	GATC	3 cut(s)	52, 106, 324
LpnPI	CCDG	4 cut(s)	210, 306, 438, 540
LweI	GCATC	4 cut(s)	20, 289, 397, 513
MaeI	CTAG	1 cut(s)	270
MalI	GATC	3 cut(s)	54, 108, 326
MboI	GATC	3 cut(s)	52, 106, 324
MboII	GAAGA	2 cut(s)	217, 435
MflI	RGATCY	1 cut(s)	324
MlsI	TGGCCA	1 cut(s)	163
MluCI	AATT	3 cut(s)	39, 78, 85
MluNI	TGGCCA	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	225, 490
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	4 cut(s)	200, 350, 477, 495
Mox20I	TGGCCA	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	163
MseI	TTAA	3 cut(s)	203, 309, 389
Msp20I	TGGCCA	1 cut(s)	163
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NdeII	GATC	3 cut(s)	52, 106, 324
NlaIII	CATG	4 cut(s)	299, 319, 384, 442
NlaIV	GGNNCC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	225, 489
PpsI	GAGTC	2 cut(s)	225, 489
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	203, 309, 389
Sau3AI	GATC	3 cut(s)	52, 106, 324
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	2 cut(s)	225, 490
SetI	ASST	4 cut(s)	181, 192, 342, 359
SfaNI	GCATC	4 cut(s)	20, 289, 397, 513
SinI	GGWCC	1 cut(s)	258
Sse9I	AATT	3 cut(s)	39, 78, 85
SspMI	CTAG	1 cut(s)	270
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	286, 370, 424
TaqI	TCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	39, 78, 85
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	3 cut(s)	203, 309, 389
Tru9I	TTAA	3 cut(s)	203, 309, 389
TspDTI	ATGAA	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	3 cut(s)	39, 78, 85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	377
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.