Rmu_co8307623.1_g000001

Rae1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8307623.1
OG0020983
Physical Location & Seq
Forward (+)
1 .. 889
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8307623.1_g000001.1.cds

Sequence Viewer

Length: 363 bp
gatgatggggcgactgtcttctctggaggatgtgacaagcaagctaagatgtggtccttggctactaaccaaacaatgactgttgccgtgcatgatgcccccattaaagacatggcttggatccccgagttgaacctcctagtcactggaagcctggacaagactgtaaagtattgggatacgaggcagcagagcccagcgcacacccaacagctccctgaacgctgctatgcactatcagtgaaacagtctctaatggttgttgggacggcggatagaaatattattatttttcacttgcagcaaccccaggtaacattcattttgaggggtcaccagattatatttattttaccattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
WD40

Protein Analysis

120

Amino Acids

13.46

Weight (kDa)

7.08

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020983)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15850
rosa_chinensis RchiOBHm_Chr6g0265371
rosa_multiflora Rmu_co8307623.1_g000001
rosa_samantha Rh3BG217900
rosa_wichuraiana Rw6G027590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 2 cut(s) 115, 128
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 2 cut(s) 153, 309
AluBI AGCT 2 cut(s) 44, 214
AluI AGCT 2 cut(s) 44, 214
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 2 cut(s) 115, 128
Ama87I CYCGRG 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 187, 225, 301
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 54
BamHI GGATCC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 3 cut(s) 199, 212, 313
BceAI ACGGC 2 cut(s) 71, 285
BciT130I CCWGG 2 cut(s) 155, 311
BciVI GTATCC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 3 cut(s) 188, 226, 302
BlsI GCNGC 3 cut(s) 189, 227, 303
Bme1390I CCNGG 2 cut(s) 155, 311
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 2 cut(s) 155, 311
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 10
BpmI CTGGAG 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 57, 309
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 2 cut(s) 155, 311
BseDI CCNNGG 2 cut(s) 57, 309
BseGI GGATG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 199, 212, 313
BseYI CCCAGC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 280
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 2 cut(s) 115, 128
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 57, 309
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 155, 311
Bst4CI ACNGT 4 cut(s) 16, 82, 166, 249
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 2 cut(s) 155, 311
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 153, 309
BstV1I GCAGC 3 cut(s) 199, 212, 313
BstV2I GAAGAC 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuI GTATCC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 35
BtsIMutI CAGTG 2 cut(s) 144, 246
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 2 cut(s) 92, 112
CviJI RGCY 6 cut(s) 44, 62, 116, 153, 195, 214
CviKI_1 RGCY 6 cut(s) 44, 62, 116, 153, 195, 214
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EciI GGCGGA 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 153, 309
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 95, 115
FaiI YATR 4 cut(s) 93, 113, 231, 344
FaqI GGGAC 1 cut(s) 280
FatI CATG 2 cut(s) 91, 111
Fnu4HI GCNGC 3 cut(s) 188, 226, 302
FokI GGATG 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 3 cut(s) 188, 226, 302
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 201
GluI GCNGC 3 cut(s) 188, 226, 302
GsaI CCCAGC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 45
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 95, 115
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HphI GGTGA 1 cut(s) 326
Hpy188III TCNNGA 1 cut(s) 24
HpyCH4III ACNGT 4 cut(s) 16, 82, 166, 249
HpyCH4V TGCA 3 cut(s) 91, 233, 301
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 2 cut(s) 95, 115
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 9 cut(s) 9, 132, 140, 167, 210, 231, 296, 323, 350
Lsp1109I GCAGC 3 cut(s) 199, 212, 313
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 4 cut(s) 32, 142, 313, 332
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 10
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 197
MnlI CCTC 4 cut(s) 20, 146, 177, 321
MseI TTAA 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 155, 311
MvaI CCWGG 2 cut(s) 155, 311
NdeII GATC 1 cut(s) 120
NlaIII CATG 2 cut(s) 95, 115
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 3 cut(s) 32, 142, 332
PkrI GCNGC 3 cut(s) 189, 227, 303
Psp6I CCWGG 2 cut(s) 153, 309
PspEI GGTNACC 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 2 cut(s) 153, 309
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 120
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 3 cut(s) 188, 226, 302
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 2 cut(s) 155, 311
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 46, 138, 216, 315
SfaNI GCATC 1 cut(s) 85
SinI GGWCC 1 cut(s) 54
SsiI CCGC 1 cut(s) 272
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 153, 309
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 4 cut(s) 16, 82, 166, 249
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 151, 246
TseFI GTSAC 3 cut(s) 32, 142, 332
TseI GCWGC 3 cut(s) 187, 225, 301
Tsp45I GTSAC 3 cut(s) 32, 142, 332
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 2 cut(s) 151, 246
VpaK11BI GGWCC 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.