AT1G16490
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019623
Physical Location & Seq
Reverse (-)
5629655 .. 5631088
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16490.2

Sequence Viewer

Length: 825 bp
ATGGGCAAAGGAAGAGCACCATGTTGTGACAAAACCAAAGTGAAGAGAGGACCATGGAGCCATGATGAAGACTTGAAACTCATCTCTTTCATTCACAAGAATGGTCATGAGAATTGGAGATCTCTCCCAAAGCAAGCTGGATTGTTGAGGTGTGGCAAGAGTTGTCGTCTGCGATGGATTAATTACCTCAGACCTGATGTGAAACGTGGCAATTTCAGTGCAGAGGAAGAAGACACCATCATCAAACTTCACCAGAGCTTTGGTAACAAGTGGTCGAAGATTGCTTCTAAGCTGCCTGGAAGAACAGACAATGAGATCAAGAATGTGTGGCATACACATCTCAAGAAAAGATTGAGCTCGGAAACTAACCTTAATGCCGATGAAGCGGGTTCAAAAGGTTCTTTGAATGAAGAAGAGAACTCTCAAGAGTCATCTCCAAATGCTTCAATGTCTTTTGCTGGTTCCAACATTTCAAGCAAAGACGATGATGCACAGATAAGTCAAATGTTTGAGCACATTCTAACTTATAGCGAGTTTACGGGGATGTTACAAGAGGTAGACAAACCAGAGCTGCTGGAGATGCCTTTTGATTTAGATCCTGACATTTGGAGTTTCATAGATGGTTCAGACTCATTCCAACAACCAGAGAACAGAGCTCTTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTTAAGCACCTGGAAAGCGAACTCGGGTTAGAAGAAAACGATAACCAACAACAACAACAACAGCATAAACAGGGAACAGAAGATGAACATTCATCATCACTCTTGGAGAGTTACGAGCTCCTCATACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

274

Amino Acids

31.46

Weight (kDa)

5.09

Isoelectric Point (pI)

60.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 45 4.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16490 AT1G16490 AT1G79180 AT1G79180
malus_domestica MD04G1229400.v1.1
prunus_persica Prupe.6G349200_v2.0.a1 Prupe.6G349200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 558
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 590
AcuI CTGAAG 1 cut(s) 690
AgsI TTSAA 6 cut(s) 76, 393, 406, 447, 474, 662
AjnI CCWGG 2 cut(s) 295, 702
AluBI AGCT 7 cut(s) 137, 258, 292, 357, 571, 656, 811
AluI AGCT 7 cut(s) 137, 258, 292, 357, 571, 656, 811
Alw21I GWGCWC 5 cut(s) 19, 359, 516, 658, 813
AlwI GGATC 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 716
ApeKI GCWGC 2 cut(s) 292, 571
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 1 cut(s) 50
BanII GRGCYC 3 cut(s) 359, 658, 813
BbsI GAAGAC 2 cut(s) 75, 237
Bbv12I GWGCWC 5 cut(s) 19, 359, 516, 658, 813
BbvI GCAGC 2 cut(s) 279, 558
BccI CCATC 3 cut(s) 168, 245, 614
BciT130I CCWGG 2 cut(s) 297, 704
BglII AGATCT 1 cut(s) 119
BisI GCNGC 2 cut(s) 293, 572
BlsI GCNGC 2 cut(s) 294, 573
Bme1390I CCNGG 2 cut(s) 297, 704
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 59, 463
BmrFI CCNGG 2 cut(s) 297, 704
BmsI GCATC 2 cut(s) 478, 570
BpiI GAAGAC 2 cut(s) 75, 237
BpmI CTGGAG 1 cut(s) 596
BpuEI CTTGAG 2 cut(s) 326, 408
BsaBI GATNNNNATC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 594
BseBI CCWGG 2 cut(s) 297, 704
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 549
BseJI GATNNNNATC 1 cut(s) 594
BseMII CTCAG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 803
BseXI GCAGC 2 cut(s) 279, 558
BsgI GTGCAG 1 cut(s) 240
BsiHKAI GWGCWC 5 cut(s) 19, 359, 516, 658, 813
BsiHKCI CYCGRG 1 cut(s) 716
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 5 cut(s) 19, 359, 516, 658, 813
Bsp143I GATC 3 cut(s) 119, 315, 595
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 201
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 59, 463
BspPI GGATC 1 cut(s) 590
BspQI GCTCTTC 2 cut(s) 7, 663
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 3 cut(s) 119, 315, 595
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 2 cut(s) 297, 704
Bst6I CTCTTC 4 cut(s) 7, 38, 408, 663
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 188, 288
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 549
BstKTI GATC 3 cut(s) 122, 318, 598
BstMBI GATC 3 cut(s) 119, 315, 595
BstMWI GCNNNNNNNGC 2 cut(s) 383, 580
BstNI CCWGG 2 cut(s) 297, 704
BstSCI CCNGG 2 cut(s) 295, 702
BstV1I GCAGC 2 cut(s) 279, 558
BstV2I GAAGAC 2 cut(s) 75, 237
BstX2I RGATCY 2 cut(s) 119, 595
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 2 cut(s) 119, 595
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 549
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 135
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 4 cut(s) 21, 54, 62, 107
CviJI RGCY 8 cut(s) 60, 137, 258, 292, 357, 571, 656, 811
CviKI_1 RGCY 8 cut(s) 60, 137, 258, 292, 357, 571, 656, 811
DdeI CTNAG 2 cut(s) 188, 288
DpnI GATC 3 cut(s) 121, 317, 597
DpnII GATC 3 cut(s) 119, 315, 595
Eam1104I CTCTTC 4 cut(s) 7, 38, 408, 663
EarI CTCTTC 4 cut(s) 7, 38, 408, 663
Ecl136II GAGCTC 3 cut(s) 357, 656, 811
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 3 cut(s) 359, 658, 813
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 3 cut(s) 357, 656, 811
Eco57I CTGAAG 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 716
EcoICRI GAGCTC 3 cut(s) 357, 656, 811
EcoRII CCWGG 2 cut(s) 295, 702
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 3 cut(s) 359, 658, 813
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 4 cut(s) 24, 57, 65, 110
FaiI YATR 9 cut(s) 22, 55, 63, 108, 333, 528, 617, 759, 818
FatI CATG 4 cut(s) 20, 53, 61, 106
FauI CCCGC 1 cut(s) 379
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 2 cut(s) 293, 572
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 3 cut(s) 359, 658, 813
Fsp4HI GCNGC 2 cut(s) 293, 572
GluI GCNGC 2 cut(s) 293, 572
GsuI CTGGAG 1 cut(s) 596
Hin1II CATG 4 cut(s) 24, 57, 65, 110
HinfI GANTC 3 cut(s) 428, 629, 665
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 537, 559
Hpy188I TCNGA 4 cut(s) 191, 361, 628, 670
Hpy188III TCNNGA 6 cut(s) 107, 319, 343, 425, 599, 662
Hpy8I GTNNAC 2 cut(s) 537, 559
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 221, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 580
HpyF3I CTNAG 2 cut(s) 188, 288
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 4 cut(s) 24, 57, 65, 110
Kzo9I GATC 3 cut(s) 119, 315, 595
LguI GCTCTTC 2 cut(s) 7, 663
LmnI GCTCC 2 cut(s) 57, 816
Lsp1109I GCAGC 2 cut(s) 279, 558
LweI GCATC 2 cut(s) 478, 570
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 4 cut(s) 26, 263, 546, 803
MalI GATC 3 cut(s) 121, 317, 597
MboI GATC 3 cut(s) 119, 315, 595
MflI RGATCY 2 cut(s) 119, 595
MhlI GDGCHC 5 cut(s) 19, 359, 516, 658, 813
MluCI AATT 3 cut(s) 112, 181, 211
MlyI GAGTC 3 cut(s) 437, 623, 674
MmeI TCCRAC 2 cut(s) 489, 661
MnlI CCTC 6 cut(s) 41, 141, 197, 217, 547, 824
MseI TTAA 4 cut(s) 180, 372, 696, 823
MslI CAYNNNNRTG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 297, 704
MvaI CCWGG 2 cut(s) 297, 704
MwoI GCNNNNNNNGC 2 cut(s) 383, 580
NcoI CCATGG 1 cut(s) 53
NdeII GATC 3 cut(s) 119, 315, 595
NlaIII CATG 4 cut(s) 24, 57, 65, 110
NlaIV GGNNCC 2 cut(s) 59, 463
NmuCI GTSAC 1 cut(s) 26
PagI TCATGA 1 cut(s) 106
PciSI GCTCTTC 2 cut(s) 7, 663
PkrI GCNGC 2 cut(s) 294, 573
PleI GAGTC 3 cut(s) 436, 623, 673
PpsI GAGTC 3 cut(s) 436, 623, 673
PshBI ATTAAT 1 cut(s) 180
Psp124BI GAGCTC 3 cut(s) 359, 658, 813
Psp6I CCWGG 2 cut(s) 295, 702
PspGI CCWGG 2 cut(s) 295, 702
PspN4I GGNNCC 2 cut(s) 59, 463
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 2 cut(s) 119, 595
RseI CAYNNNNRTG 1 cut(s) 99
SacI GAGCTC 3 cut(s) 359, 658, 813
SapI GCTCTTC 2 cut(s) 7, 663
SaqAI TTAA 4 cut(s) 180, 372, 696, 823
SatI GCNGC 2 cut(s) 293, 572
Sau3AI GATC 3 cut(s) 119, 315, 595
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 3 cut(s) 437, 623, 674
ScrFI CCNGG 2 cut(s) 297, 704
SduI GDGCHC 5 cut(s) 19, 359, 516, 658, 813
SfaNI GCATC 2 cut(s) 478, 570
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 341, 423
SmoI CTYRAG 2 cut(s) 341, 423
Sse9I AATT 3 cut(s) 112, 181, 211
SsiI CCGC 1 cut(s) 386
SstI GAGCTC 3 cut(s) 359, 658, 813
StyD4I CCNGG 2 cut(s) 295, 702
StyI CCWWGG 1 cut(s) 53
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 112, 181, 211
Tru1I TTAA 4 cut(s) 180, 372, 696, 823
Tru9I TTAA 4 cut(s) 180, 372, 696, 823
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 2 cut(s) 292, 571
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 8 cut(s) 79, 81, 396, 423, 604, 693, 774, 792
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 50
VspI ATTAAT 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.