MD04G1229400.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0019623
Physical Location & Seq
Forward (+)
30970926 .. 30971668
743 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1229400.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGTGATAATGAACTTGTTCCATGTAATTAAGTCTTCTCCCGGTTCAGTATGGTCTGCCATTGCGTCGAGCTTGCCAGGCAGGACAGACAACGAAATAAAGAACTTCTGGCACTCTCACTTGAAGAAGAGATCAAGAACGTATTTTAGACTTGATGATTATGATCAGCAGAAGCACTTCTCGTCAAAAAGTACTTTTCCAGTTCCGGGGTTAATTCATGAGCCTCCTTCCTCTTCCAACCCTGCCGTACCAATCCCGAACAATGATGGTTCCAAGACCAGTATTGAGGACATAGATTTTTGGTACAACCTCTTTATGAAAGCAGGAGAGGCTCCAAAGAGTAGTACTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

8.96

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 41 7.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16490 AT1G16490 AT1G79180 AT1G79180
malus_domestica MD04G1229400.v1.1
prunus_persica Prupe.6G349200_v2.0.a1 Prupe.6G349200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 4 cut(s) 193, 249, 305, 346
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 1 cut(s) 72
AluI AGCT 1 cut(s) 72
Asp700I GAANNNNTTC 2 cut(s) 17, 176
AsuC2I CCSGG 2 cut(s) 42, 207
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 1 cut(s) 260
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 78
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 2 cut(s) 42, 207
BmcAI AGTACT 2 cut(s) 193, 346
Bme1390I CCNGG 3 cut(s) 42, 78, 207
BmiI GGNNCC 2 cut(s) 271, 333
BmrFI CCNGG 3 cut(s) 42, 78, 207
BpiI GAAGAC 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 42, 207
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 200, 279
Bse3DI GCAATG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 200, 279
BsiSI CCGG 2 cut(s) 42, 206
BslI CCNNNNNNNGG 1 cut(s) 206
Bsp143I GATC 2 cut(s) 131, 163
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 271, 333
BsrDI GCAATG 1 cut(s) 60
BsrI ACTGG 2 cut(s) 200, 279
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 131, 163
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 122, 238
BstC8I GCNNGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 134, 166
BstMBI GATC 2 cut(s) 131, 163
BstMWI GCNNNNNNNGC 2 cut(s) 78, 329
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 3 cut(s) 40, 76, 205
BstV2I GAAGAC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 74
CciI TCATGA 1 cut(s) 217
CseI GACGC 1 cut(s) 54
Csp6I GTAC 4 cut(s) 192, 248, 304, 345
CviAII CATG 3 cut(s) 23, 218, 351
CviJI RGCY 3 cut(s) 72, 223, 332
CviKI_1 RGCY 3 cut(s) 72, 223, 332
CviQI GTAC 4 cut(s) 192, 248, 304, 345
DpnI GATC 2 cut(s) 133, 165
DpnII GATC 2 cut(s) 131, 163
Eam1104I CTCTTC 2 cut(s) 122, 238
EarI CTCTTC 2 cut(s) 122, 238
EcoRII CCWGG 1 cut(s) 76
FaeI CATG 3 cut(s) 26, 221, 354
FaiI YATR 7 cut(s) 24, 52, 162, 219, 293, 317, 352
FatI CATG 3 cut(s) 22, 217, 350
FbaI TGATCA 1 cut(s) 163
HapII CCGG 2 cut(s) 42, 206
HgaI GACGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 26, 221, 354
HpaII CCGG 2 cut(s) 42, 206
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 135, 218, 256
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 329
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 26, 221, 354
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 131, 163
LmnI GCTCC 1 cut(s) 337
MaeII ACGT 1 cut(s) 140
MalI GATC 2 cut(s) 133, 165
MboI GATC 2 cut(s) 131, 163
MboII GAAGA 4 cut(s) 27, 136, 139, 225
MluCI AATT 2 cut(s) 27, 213
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 5 cut(s) 234, 241, 280, 320, 322
MroXI GAANNNNTTC 2 cut(s) 17, 176
MseI TTAA 2 cut(s) 30, 212
MspI CCGG 2 cut(s) 42, 206
MspR9I CCNGG 3 cut(s) 42, 78, 207
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 78, 329
NciI CCSGG 2 cut(s) 42, 207
NdeII GATC 2 cut(s) 131, 163
NlaIII CATG 3 cut(s) 26, 221, 354
NlaIV GGNNCC 2 cut(s) 271, 333
PagI TCATGA 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 17, 176
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 271, 333
RsaI GTAC 4 cut(s) 193, 249, 305, 346
RsaNI GTAC 4 cut(s) 192, 248, 304, 345
SaqAI TTAA 2 cut(s) 30, 212
Sau3AI GATC 2 cut(s) 131, 163
ScaI AGTACT 2 cut(s) 193, 346
ScrFI CCNGG 3 cut(s) 42, 78, 207
SetI ASST 3 cut(s) 74, 143, 312
Sse9I AATT 2 cut(s) 27, 213
StyD4I CCNGG 3 cut(s) 40, 76, 205
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 27, 213
TatI WGTACW 2 cut(s) 191, 344
Tru1I TTAA 2 cut(s) 30, 212
Tru9I TTAA 2 cut(s) 30, 212
TspDTI ATGAA 3 cut(s) 26, 206, 332
XmnI GAANNNNTTC 2 cut(s) 17, 176
ZrmI AGTACT 2 cut(s) 193, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.