AT1G79180
MYB Family

myb domain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0019623
Physical Location & Seq
Forward (+)
29786257 .. 29787820
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79180.2

Sequence Viewer

Length: 885 bp
ATGGGGAAGGGAAGAGCACCTTGTTGTGACAAGACCAAAGTGAAGAGAGGTCCATGGAGCCCAGAAGAAGACATTAAACTCATCTCTTTCATTCAAAAGTTTGGTCATGAGAACTGGAGATCTCTCCCCAAACAATCTGGGCTATTGAGGTGTGGGAAGAGTTGTCGTCTAAGGTGGATTAACTATCTTAGGCCAGATCTGAAGCGTGGCAACTTCACTTCAGAGGAGGAAGAAACAATCATTAAGCTTCACCACAACTATGGGAACAAGTGGTCGAAAATCGCTTCTCAACTTCCAGGTAGAACAGATAACGAGATCAAGAATGTGTGGCACACTCATCTAAAGAAAAGACTGGCTCAGAGCTCAGGAACTGCAGATGAACCGGCCTCGCCTTGTTCGAGTGATTCTGTTTCTCGTGGGAAAGATGATAAGTCATCTCACGTAGAAGATTCTTTGAACAGAGAGACTAATCATAGGAATGAGTTGTCTACATCTATGTCTTCTGGGGGTTCCAACCAACAAGATGATCCAAAGATAGACGAACTCAGGTTTGAGTATATAGAAGAAGCTTATAGCGAGTTTAACGACATTATTATTCAAGAGGTAGACAAACCCGATCTGCTGGAGATACCATTTGATTCAGATCCTGACATTTGGAGTTTCTTAGATACTTCAAACTCATTTCAACAATCCACTGCAAATGAGAACAGCTCAGGCTCAAGAGCAACAACAGAAGAAGAGTCTGATGAGGATGAGGTTAAGAAATGGTTCAAGCACCTAGAAAGCGAACTCGGGTTAGAAGAAGACGATAATCAACAACAATACAAAGAAGAAGAATCATCATCATCATCACTCTTGAAGAACTACGAGCTCATGATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

294

Amino Acids

33.78

Weight (kDa)

5.04

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 16 - 46 1.7e-07 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 19 - 111 3.3e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 102 - 147 5e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 105 - 154 8.8e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019623)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16490 AT1G16490 AT1G79180 AT1G79180
malus_domestica MD04G1229400.v1.1
prunus_persica Prupe.6G349200_v2.0.a1 Prupe.6G349200_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 488, 606
AclWI GGATC 2 cut(s) 521, 638
AcuI CTGAAG 2 cut(s) 204, 221
AgsI TTSAA 7 cut(s) 95, 457, 599, 675, 686, 772, 859
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 5 cut(s) 247, 363, 569, 711, 871
AluI AGCT 5 cut(s) 247, 363, 569, 711, 871
Alw21I GWGCWC 3 cut(s) 19, 365, 873
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 2 cut(s) 521, 638
AlwNI CAGNNNCTG 2 cut(s) 371, 647
Ama87I CYCGRG 1 cut(s) 791
AoxI GGCC 2 cut(s) 191, 384
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
Asp700I GAANNNNTTC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 791
AvaII GGWCC 1 cut(s) 50
BanII GRGCYC 3 cut(s) 62, 365, 873
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 3 cut(s) 75, 492, 810
Bbv12I GWGCWC 3 cut(s) 19, 365, 873
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 1 cut(s) 779
BfmI CTRYAG 1 cut(s) 372
BglII AGATCT 2 cut(s) 119, 196
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 791
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 59, 511
BmrFI CCNGG 1 cut(s) 297
BpiI GAAGAC 3 cut(s) 75, 492, 810
BplI GAGNNNNNCTC 2 cut(s) 695, 727
BpmI CTGGAG 2 cut(s) 136, 644
Bpu10I CCTNAGC 2 cut(s) 364, 712
BpuEI CTTGAG 1 cut(s) 703
BsaAI YACGTR 1 cut(s) 442
BsaBI GATNNNNATC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 53
Bse118I RCCGGY 1 cut(s) 382
Bse1I ACTGG 2 cut(s) 119, 357
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 757
BseJI GATNNNNATC 1 cut(s) 642
BseMII CTCAG 4 cut(s) 371, 378, 559, 726
BseNI ACTGG 2 cut(s) 119, 357
BseRI GAGGAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 193, 386
BsiHKAI GWGCWC 3 cut(s) 19, 365, 873
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 1 cut(s) 383
BsmAI GTCTC 1 cut(s) 458
BsnI GGCC 2 cut(s) 193, 386
BsoBI CYCGRG 1 cut(s) 791
Bsp1286I GDGCHC 4 cut(s) 19, 62, 365, 873
Bsp143I GATC 6 cut(s) 119, 196, 315, 526, 616, 643
Bsp19I CCATGG 1 cut(s) 53
BspANI GGCC 2 cut(s) 193, 386
BspCNI CTCAG 4 cut(s) 370, 377, 558, 725
BspHI TCATGA 2 cut(s) 106, 873
BspLI GGNNCC 2 cut(s) 59, 511
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 2 cut(s) 521, 638
BspQI GCTCTTC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 382
BsrI ACTGG 2 cut(s) 119, 357
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 6 cut(s) 119, 196, 315, 526, 616, 643
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 297
Bst6I CTCTTC 4 cut(s) 7, 38, 152, 732
BstBAI YACGTR 1 cut(s) 442
BstDEI CTNAG 7 cut(s) 170, 188, 357, 364, 545, 664, 712
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 757
BstKTI GATC 6 cut(s) 122, 199, 318, 529, 619, 646
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 6 cut(s) 119, 196, 315, 526, 616, 643
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 372
BstV2I GAAGAC 3 cut(s) 75, 492, 810
BstX2I RGATCY 3 cut(s) 119, 196, 643
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 3 cut(s) 119, 196, 643
BsuRI GGCC 2 cut(s) 193, 386
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 1 cut(s) 693
CaiI CAGNNNCTG 2 cut(s) 371, 647
CciI TCATGA 2 cut(s) 106, 873
Cfr10I RCCGGY 1 cut(s) 382
Cfr13I GGNCC 1 cut(s) 50
CviAII CATG 3 cut(s) 54, 107, 874
DdeI CTNAG 7 cut(s) 170, 188, 357, 364, 545, 664, 712
DpnI GATC 6 cut(s) 121, 198, 317, 528, 618, 645
DpnII GATC 6 cut(s) 119, 196, 315, 526, 616, 643
Eam1104I CTCTTC 4 cut(s) 7, 38, 152, 732
EarI CTCTTC 4 cut(s) 7, 38, 152, 732
Ecl136II GAGCTC 2 cut(s) 363, 871
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 3 cut(s) 62, 365, 873
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 2 cut(s) 363, 871
Eco57I CTGAAG 2 cut(s) 204, 221
Eco88I CYCGRG 1 cut(s) 791
EcoICRI GAGCTC 2 cut(s) 363, 871
EcoRII CCWGG 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 3 cut(s) 62, 365, 873
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 57, 110, 877
FaiI YATR 9 cut(s) 55, 108, 261, 474, 497, 558, 560, 573, 875
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 3 cut(s) 53, 106, 873
FblI GTMKAC 2 cut(s) 488, 606
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 3 cut(s) 62, 365, 873
FspBI CTAG 1 cut(s) 779
GsuI CTGGAG 2 cut(s) 136, 644
HaeIII GGCC 2 cut(s) 193, 386
HapII CCGG 1 cut(s) 383
Hin1II CATG 3 cut(s) 57, 110, 877
HindIII AAGCTT 2 cut(s) 245, 567
HinfI GANTC 5 cut(s) 404, 449, 638, 740, 836
HpaII CCGG 1 cut(s) 383
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 2 cut(s) 489, 607
Hpy188I TCNGA 5 cut(s) 201, 223, 360, 643, 745
Hpy188III TCNNGA 8 cut(s) 107, 319, 366, 599, 647, 720, 856, 874
Hpy8I GTNNAC 2 cut(s) 489, 607
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 374, 698
HpyF3I CTNAG 7 cut(s) 170, 188, 357, 364, 545, 664, 712
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 57, 110, 877
Kzo9I GATC 6 cut(s) 119, 196, 315, 526, 616, 643
LguI GCTCTTC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 57
MaeI CTAG 1 cut(s) 779
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 26
MalI GATC 6 cut(s) 121, 198, 317, 528, 618, 645
MboI GATC 6 cut(s) 119, 196, 315, 526, 616, 643
MflI RGATCY 3 cut(s) 119, 196, 643
MhlI GDGCHC 4 cut(s) 19, 62, 365, 873
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 1 cut(s) 537
MnlI CCTC 8 cut(s) 41, 141, 217, 220, 397, 595, 742, 748
MroXI GAANNNNTTC 1 cut(s) 767
MseI TTAA 5 cut(s) 75, 180, 243, 582, 759
MslI CAYNNNNRTG 2 cut(s) 258, 477
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
NcoI CCATGG 1 cut(s) 53
NdeII GATC 6 cut(s) 119, 196, 315, 526, 616, 643
NlaIII CATG 3 cut(s) 57, 110, 877
NlaIV GGNNCC 2 cut(s) 59, 511
NmuCI GTSAC 1 cut(s) 26
PagI TCATGA 2 cut(s) 106, 873
PciSI GCTCTTC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 767
PfeI GAWTC 4 cut(s) 404, 449, 638, 836
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
Ppu21I YACGTR 1 cut(s) 442
Psp124BI GAGCTC 2 cut(s) 365, 873
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 59, 511
PspPI GGNCC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 2 cut(s) 371, 647
PsuI RGATCY 3 cut(s) 119, 196, 643
RseI CAYNNNNRTG 2 cut(s) 258, 477
SacI GAGCTC 2 cut(s) 365, 873
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 5 cut(s) 75, 180, 243, 582, 759
Sau3AI GATC 6 cut(s) 119, 196, 315, 526, 616, 643
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 4 cut(s) 19, 62, 365, 873
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 258, 477
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
SspMI CTAG 1 cut(s) 779
SstI GAGCTC 2 cut(s) 365, 873
StyD4I CCNGG 1 cut(s) 295
StyI CCWWGG 1 cut(s) 53
TaiI ACGT 1 cut(s) 444
TaqI TCGA 2 cut(s) 275, 398
TfiI GAWTC 4 cut(s) 404, 449, 638, 836
Tru1I TTAA 5 cut(s) 75, 180, 243, 582, 759
Tru9I TTAA 5 cut(s) 75, 180, 243, 582, 759
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 79, 393
TspRI CASTG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 50
XmiI GTMKAC 2 cut(s) 488, 606
XmnI GAANNNNTTC 1 cut(s) 767
XspI CTAG 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.