Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0019623

Physical Location & Seq

Genomic Coordinates Forward (+)

29810287 .. 29811795

Gene Structure 1509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G349200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAGAAAAATGGTGAGGGCTCCTTATTGTGAGAAGATGGGGCTAAAGAAGGGACCGTGGACGCCCGAAGAAGATGATACATTGATTGCTTACATCCGACAACATGGCCATTTTAATTGGAGAGCGCTTCCAAAACAAGCAGGTCTGTCGAGGTGTGGAAAGAGTTGCAGACTTCGGTGGTTTAACTACTTGCGGCCAGATATTAAAAGGGGAAATTTTAGCAAGGAAGAAGAAGAAACCATCCTCAAGCTGCATAAACTTCTTGGAAATAGGAGCAAGAGAGTTGAACAAGAAAGTCAAGTACCTGCAGCAGCCCTCCTAACCAGAAGCATTAATAATATCATCCCCCTCAAGAACGGAGACCAAAGAATTCAATGTCCTATCCAATATGCACCAACAACCCTTTTTAGACTTGATGATGATCTTCATAACAAGTTGTTGTCAAAACGGACATGTAGTTGTCCAAATATTATTAATGCAGATCCAGGACTTCAGCCTCCTTTCTCTTCTTCTTCTAACTCTACCGCGGGGCAAATCATGAAAAGGGAAGGATCCAAGACCCATGAAGACATGGATTTTTGGTACAGCCTCTTTATGAAAGCTGGAGGGACATCAACAGTAGCTCTGCCAGTCTGCCACTGCATGATGGAGTTTAGTGCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

222

Amino Acids

25.2

Weight (kDa)

9.39

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019623)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16490 AT1G16490 AT1G79180 AT1G79180
malus_domestica	MD04G1229400.v1.1
prunus_persica	Prupe.6G349200_v2.0.a1 Prupe.6G349200_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	131, 313
AccII	CGCG	1 cut(s)	527
AciI	CCGC	3 cut(s)	193, 525, 527
AclWI	GGATC	3 cut(s)	476, 546, 559
AcoI	YGGCCR	2 cut(s)	106, 194
AcsI	RAATTY	2 cut(s)	214, 369
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	62
AfaI	GTAC	2 cut(s)	303, 584
AfeI	AGCGCT	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	287, 374
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	3 cut(s)	250, 602, 623
AluI	AGCT	3 cut(s)	250, 602, 623
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	3 cut(s)	476, 546, 559
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	2 cut(s)	106, 194
ApeKI	GCWGC	3 cut(s)	250, 308, 311
ApoI	RAATTY	2 cut(s)	214, 369
AseI	ATTAAT	2 cut(s)	333, 474
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	53
BalI	TGGCCA	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	237, 320, 323
BccI	CCATC	3 cut(s)	31, 248, 640
BcgI	CGANNNNNNTGC	2 cut(s)	129, 163
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	128
BfuAI	ACCTGC	2 cut(s)	131, 313
BisI	GCNGC	4 cut(s)	194, 251, 309, 312
BlsI	GCNGC	4 cut(s)	195, 252, 310, 313
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	3 cut(s)	21, 54, 553
BmrFI	CCNGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	230, 335
BsaBI	GATNNNNATC	1 cut(s)	420
BsaHI	GRCGYC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	56, 525
Bse1I	ACTGG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	56, 525
BseGI	GGATG	3 cut(s)	93, 240, 342
BseJI	GATNNNNATC	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	629
BseXI	GCAGC	3 cut(s)	237, 320, 323
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	2 cut(s)	108, 196
BslFI	GGGAC	2 cut(s)	66, 622
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	2 cut(s)	66, 622
BsnI	GGCC	2 cut(s)	108, 196
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	421, 481, 551
BspACI	CCGC	3 cut(s)	193, 525, 527
BspANI	GGCC	2 cut(s)	108, 196
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	21, 54, 553
BspMAI	CTGCAG	1 cut(s)	310
BspMI	ACCTGC	2 cut(s)	131, 313
BspPI	GGATC	3 cut(s)	476, 546, 559
BspTNI	GGTCTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	56, 525
BssMI	GATC	3 cut(s)	421, 481, 551
BssNI	GRCGYC	1 cut(s)	62
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	57, 619
Bst6I	CTCTTC	1 cut(s)	511
BstACI	GRCGYC	1 cut(s)	62
BstDSI	CCRYGG	2 cut(s)	56, 525
BstF5I	GGATG	3 cut(s)	93, 240, 342
BstFNI	CGCG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	3 cut(s)	424, 484, 554
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	421, 481, 551
BstNI	CCWGG	1 cut(s)	486
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	237, 320, 323
BstV2I	GAAGAC	1 cut(s)	573
BstX2I	RGATCY	2 cut(s)	481, 551
BstYI	RGATCY	2 cut(s)	481, 551
BsuRI	GGCC	2 cut(s)	108, 196
BtgI	CCRYGG	2 cut(s)	56, 525
BtsCI	GGATG	3 cut(s)	93, 240, 342
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	637
BveI	ACCTGC	2 cut(s)	131, 313
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	53
Cfr42I	CCGCGG	1 cut(s)	528
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	302, 583
CviAII	CATG	6 cut(s)	104, 453, 538, 563, 571, 643
CviQI	GTAC	2 cut(s)	302, 583
DpnI	GATC	3 cut(s)	423, 483, 553
DpnII	GATC	3 cut(s)	421, 481, 551
EaeI	YGGCCR	2 cut(s)	106, 194
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	53
Eco47III	AGCGCT	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	6 cut(s)	107, 456, 541, 566, 574, 646
FaqI	GGGAC	2 cut(s)	66, 622
FatI	CATG	6 cut(s)	103, 452, 537, 562, 570, 642
FauI	CCCGC	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	194, 251, 309, 312
FokI	GGATG	3 cut(s)	80, 227, 329
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	4 cut(s)	194, 251, 309, 312
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	4 cut(s)	194, 251, 309, 312
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	108, 196
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	62
Hin1II	CATG	6 cut(s)	107, 456, 541, 566, 574, 646
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	2 cut(s)	352, 538
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	43, 542
HpyCH4III	ACNGT	2 cut(s)	57, 619
HpyCH4V	TGCA	7 cut(s)	168, 253, 308, 392, 479, 642, 659
Hsp92I	GRCGYC	1 cut(s)	62
Hsp92II	CATG	6 cut(s)	107, 456, 541, 566, 574, 646
HspAI	GCGC	1 cut(s)	125
KspI	CCGCGG	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	421, 481, 551
LmnI	GCTCC	2 cut(s)	25, 273
LpnPI	CCDG	8 cut(s)	126, 210, 318, 337, 471, 498, 588, 642
Lsp1109I	GCAGC	3 cut(s)	237, 320, 323
MalI	GATC	3 cut(s)	423, 483, 553
MboI	GATC	3 cut(s)	421, 481, 551
MflI	RGATCY	2 cut(s)	481, 551
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	4 cut(s)	115, 214, 369, 660
MluNI	TGGCCA	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	8 cut(s)	9, 144, 254, 326, 359, 507, 599, 599
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	5 cut(s)	114, 183, 204, 333, 474
Msp20I	TGGCCA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	486
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	527
NdeII	GATC	3 cut(s)	421, 481, 551
NlaIII	CATG	6 cut(s)	107, 456, 541, 566, 574, 646
NlaIV	GGNNCC	3 cut(s)	21, 54, 553
NspI	RCATGY	1 cut(s)	456
PagI	TCATGA	1 cut(s)	537
PciI	ACATGT	1 cut(s)	452
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	4 cut(s)	195, 252, 310, 313
PscI	ACATGT	1 cut(s)	452
PshBI	ATTAAT	2 cut(s)	333, 474
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	21, 54, 553
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	481, 551
RsaI	GTAC	2 cut(s)	303, 584
RsaNI	GTAC	2 cut(s)	302, 583
SacII	CCGCGG	1 cut(s)	528
SaqAI	TTAA	5 cut(s)	114, 183, 204, 333, 474
SatI	GCNGC	4 cut(s)	194, 251, 309, 312
Sau3AI	GATC	3 cut(s)	421, 481, 551
Sau96I	GGNCC	1 cut(s)	53
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	6 cut(s)	145, 155, 252, 307, 604, 625
SfcI	CTRYAG	1 cut(s)	306
Sfr303I	CCGCGG	1 cut(s)	528
SgrBI	CCGCGG	1 cut(s)	528
SinI	GGWCC	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	245, 350
SmoI	CTYRAG	2 cut(s)	245, 350
Sse9I	AATT	4 cut(s)	115, 214, 369, 660
SsiI	CCGC	3 cut(s)	193, 525, 527
SspI	AATATT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	2 cut(s)	57, 619
TaqI	TCGA	1 cut(s)	149
TasI	AATT	4 cut(s)	115, 214, 369, 660
TauI	GCSGC	1 cut(s)	196
Tru1I	TTAA	5 cut(s)	114, 183, 204, 333, 474
Tru9I	TTAA	5 cut(s)	114, 183, 204, 333, 474
TscAI	CASTG	1 cut(s)	644
TseI	GCWGC	3 cut(s)	250, 308, 311
TspDTI	ATGAA	4 cut(s)	416, 554, 579, 611
TspGWI	ACGGA	2 cut(s)	372, 463
TspRI	CASTG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	53
VspI	ATTAAT	2 cut(s)	333, 474
XapI	RAATTY	2 cut(s)	214, 369
XceI	RCATGY	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.