Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012731

Physical Location & Seq

Genomic Coordinates Reverse (-)

5787150 .. 5789312

Gene Structure 2163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCAGGGTACAGAGTGGAAGATGACTACGATTACCTCTTCAAAGTTGTTCTTATAGGCGATTCTGGAGTTGGCAAATCCAATCTCCTTTCCAGATTCACTAAAAACGAGTTCAATCTAGAGTCTAAATCCACCATTGGCGTCGAATTCGCCACTCGTACCTTAAAAGTCGATGGCAAAGTCGTTAAAGCTCAGATTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCATATTACCGTGGAGCCGTGGGTGCACTCCTAGTATATGATGTAACTCGCCGTGCAACATTTGAGAACGTAGATCGGTGGTTAAAGGAGCTCAAGAACCACACAGATCCAAACATTGTAGTGATGCTGGTTGGTAACAAATCTGATCTCCGCCACTTGCTAGCTGTTCCTACAGAAGACGGGAAGTCCTATGCGGAACAAGAATCGCTCTGCTTCATGGAAACATCTGCCCTTGAAGCTACCAATGTGGAGGACGCATTTGCAGAGGTGTTGACACAAATTTATCGCATCACAAGCAAGAAGCAAGTGGAAGCTGGTGAAGATGGGAACGCCTCTGTCCCGAAAGGTGAGAAAATCGAAGTTAAAAACGATGTCTCTGCGCTGAAGAAACTCGGGTGCTGCTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031090 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042538 GO:0042546 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0070727 GO:0071554 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

24.02

Weight (kDa)

5.59

Isoelectric Point (pI)

22.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 170	7.6e-13	ADP-ribosylation factor family
Ras	PF00071	15 - 175	1.1e-63	Ras family
Roc	PF08477	15 - 129	6.3e-36	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	1.6e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16920
fragaria_vesca	FvH4_3g18190
malus_domestica	MD00G1077000.v1.1 MD03G1275900.v1.1 MD11G1264700.v1.1
prunus_persica	Prupe.4G161600_v2.0.a1
pyrus_communis	pycom03g19300 pycom11g23300
rosa_chinensis	RchiOBHm_Chr5g0030721
rosa_laevigata	RLG00000033247
rosa_multiflora	Rmu_sc0003238.1_g000034
rosa_rugosa	Rorug05G0120400
rosa_samantha	Rh5AG211900 Rh5BG211000 Rh5CG234700 Rh5DG216400
rosa_wichuraiana	Rw0G000930 Rw5G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AciI	CCGC	2 cut(s)	391, 434
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	146, 519
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	3 cut(s)	11, 160, 224
AgsI	TTSAA	3 cut(s)	43, 115, 476
AhdI	GACNNNNNGTC	1 cut(s)	424
AhlI	ACTAGT	1 cut(s)	236
AluBI	AGCT	5 cut(s)	191, 331, 404, 479, 554
AluI	AGCT	5 cut(s)	191, 331, 404, 479, 554
Alw21I	GWGCWC	2 cut(s)	268, 333
Alw26I	GTCTC	1 cut(s)	619
Alw44I	GTGCAC	1 cut(s)	264
AlwI	GGATC	1 cut(s)	341
Ama87I	CYCGRG	1 cut(s)	632
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	639
ApoI	RAATTY	2 cut(s)	146, 519
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	569, 599
AsuNHI	GCTAGC	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	423
Bbv12I	GWGCWC	2 cut(s)	268, 333
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	167, 239, 557
BceAI	ACGGC	2 cut(s)	242, 276
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BcoDI	GTCTC	1 cut(s)	619
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	4 cut(s)	119, 237, 272, 401
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	1 cut(s)	640
BlsI	GCNGC	1 cut(s)	641
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	632
BmiI	GGNNCC	2 cut(s)	224, 256
BmsI	GCATC	2 cut(s)	354, 537
BmtI	GCTAGC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	250, 258
BseDI	CCNNGG	2 cut(s)	250, 258
BseMII	CTCAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	626
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	268, 333
BsiHKCI	CYCGRG	1 cut(s)	632
BslFI	GGGAC	2 cut(s)	215, 563
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	2 cut(s)	215, 563
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	2 cut(s)	268, 333
Bsp143I	GATC	3 cut(s)	313, 346, 385
BspACI	CCGC	2 cut(s)	391, 434
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	2 cut(s)	224, 256
BspOI	GCTAGC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	250, 258
BssMI	GATC	3 cut(s)	313, 346, 385
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	227, 251
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	192
BstDSI	CCRYGG	2 cut(s)	250, 258
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	3 cut(s)	316, 349, 388
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	3 cut(s)	313, 346, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 476, 534
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BtgI	CCRYGG	2 cut(s)	250, 258
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	622
CseI	GACGC	2 cut(s)	130, 503
Csp6I	GTAC	3 cut(s)	10, 159, 223
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	6 cut(s)	191, 257, 331, 404, 479, 554
CviKI_1	RGCY	6 cut(s)	191, 257, 331, 404, 479, 554
CviQI	GTAC	3 cut(s)	10, 159, 223
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	3 cut(s)	315, 348, 387
DpnII	GATC	3 cut(s)	313, 346, 385
DriI	GACNNNNNGTC	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	44
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	44
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	333
FaeI	CATG	1 cut(s)	460
FaiI	YATR	6 cut(s)	56, 244, 277, 279, 432, 458
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	2 cut(s)	215, 563
FatI	CATG	1 cut(s)	456
Fnu4HI	GCNGC	1 cut(s)	640
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	640
FspBI	CTAG	4 cut(s)	119, 237, 272, 401
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	1 cut(s)	640
GsuI	CTGGAG	1 cut(s)	87
HgaI	GACGC	2 cut(s)	130, 503
HhaI	GCGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	4 cut(s)	62, 96, 122, 443
HphI	GGTGA	2 cut(s)	569, 599
Hpy166II	GTNNAC	2 cut(s)	266, 513
Hpy188I	TCNGA	2 cut(s)	195, 385
Hpy188III	TCNNGA	6 cut(s)	66, 93, 119, 215, 334, 580
Hpy8I	GTNNAC	2 cut(s)	266, 513
Hpy99I	CGWCG	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	227, 251
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	242, 266, 296, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 476, 534
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	620
KpnI	GGTACC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	313, 346, 385
LmnI	GCTCC	2 cut(s)	254, 328
LpnPI	CCDG	6 cut(s)	51, 106, 195, 200, 353, 540
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	354, 537
MaeI	CTAG	4 cut(s)	119, 237, 272, 401
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	283, 374
MalI	GATC	3 cut(s)	315, 348, 387
MboI	GATC	3 cut(s)	313, 346, 385
MboII	GAAGA	5 cut(s)	31, 32, 428, 572, 637
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	268, 333
MluCI	AATT	3 cut(s)	146, 519, 646
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	47, 213, 484, 499, 583
MseI	TTAA	4 cut(s)	164, 186, 323, 603
MslI	CAYNNNNRTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	263, 476, 534
NdeII	GATC	3 cut(s)	313, 346, 385
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	224, 256
PfeI	GAWTC	3 cut(s)	62, 96, 443
PkrI	GCNGC	1 cut(s)	641
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	224, 256
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	3 cut(s)	11, 160, 224
RsaNI	GTAC	3 cut(s)	10, 159, 223
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	4 cut(s)	164, 186, 323, 603
SatI	GCNGC	1 cut(s)	640
Sau3AI	GATC	3 cut(s)	313, 346, 385
SchI	GAGTC	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	268, 333
SfaNI	GCATC	2 cut(s)	354, 537
SfcI	CTRYAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	3 cut(s)	146, 519, 646
SsiI	CCGC	2 cut(s)	391, 434
SspMI	CTAG	4 cut(s)	119, 237, 272, 401
SstI	GAGCTC	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	227, 251
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	144, 171, 597
TasI	AATT	3 cut(s)	146, 519, 646
TfiI	GAWTC	3 cut(s)	62, 96, 443
Tru1I	TTAA	4 cut(s)	164, 186, 323, 603
Tru9I	TTAA	4 cut(s)	164, 186, 323, 603
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	639
TspDTI	ATGAA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	264
XapI	RAATTY	2 cut(s)	146, 519
XbaI	TCTAGA	1 cut(s)	118
XspI	CTAG	4 cut(s)	119, 237, 272, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.