Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012731

Physical Location & Seq

Genomic Coordinates Forward (+)

24428119 .. 24432619

Gene Structure 4501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCCGGGTACAGAGCCGACGACGACTACGACTACCTCTTCAAGGTGGTCTTGATCGGCGACTCCGGCGTCGGCAAGTCCAATCTCCTCTCCAGGTTCACCAAGAACGAGTTCAACCTCGAGTCCAAGTCCACCATTGGCGTTGAGTTCGCCACCAGAACCCTCAACGTCGACAGCAAGGTCATCAAGGCCCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATTACAAGCGCTTACTATCGGGGAGCTGTGGGTGCACTTCTAGTGTACGATGTCACTCGCCATGCAACATTTGAGAATGTTGACAGATGGCTGAAAGAATTGAGGAACCACACTGATTCCAACATTGTTGTGATGCTGGTTGGAAACAAATCAGATCTTCGCCACCTTGTAGCTGTCTCAACTGAAGATGGAAAGTCCTATGCTGAGAAGGAGTCACTCTACTTCATGGAAACATCTGCACTGGAAGCAGTCAATGTGGAAAACGCATTTGCTGAAGTCCTGACTCAAATCTACCATATTGTGAGCAAGAAGGCAGTTGAAGGGGGAGAAAATGGAACAGCTTCATCTGTCCCAGCCAAAGGAGAGAAAATAAATATAAAAGATGATGTGTCTGCTCTGAAGAGAGTTGGGTGCTGCTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0006972 GO:0008104 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017076 GO:0019001 GO:0031090 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032879 GO:0033036 GO:0034613 GO:0035639 GO:0036094 GO:0042538 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060627 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098805 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.08

Weight (kDa)

5.87

Isoelectric Point (pI)

25.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 167	3.9e-13	ADP-ribosylation factor family
Ras	PF00071	15 - 175	1.6e-63	Ras family
Roc	PF08477	15 - 129	5.2e-36	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	1.7e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16920
fragaria_vesca	FvH4_3g18190
malus_domestica	MD00G1077000.v1.1 MD03G1275900.v1.1 MD11G1264700.v1.1
prunus_persica	Prupe.4G161600_v2.0.a1
pyrus_communis	pycom03g19300 pycom11g23300
rosa_chinensis	RchiOBHm_Chr5g0030721
rosa_laevigata	RLG00000033247
rosa_multiflora	Rmu_sc0003238.1_g000034
rosa_rugosa	Rorug05G0120400
rosa_samantha	Rh5AG211900 Rh5BG211000 Rh5CG234700 Rh5DG216400
rosa_wichuraiana	Rw0G000930 Rw5G019450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	68, 179
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	171
AcoI	YGGCCR	2 cut(s)	3, 211
AcuI	CTGAAG	3 cut(s)	435, 525, 650
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	3 cut(s)	11, 224, 278
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 590
AgsI	TTSAA	3 cut(s)	43, 115, 551
AjnI	CCWGG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	257, 404, 572, 654
AluI	AGCT	4 cut(s)	257, 404, 572, 654
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	1 cut(s)	412
Alw44I	GTGCAC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	3 cut(s)	3, 189, 211
ApaLI	GTGCAC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	645
Asp700I	GAANNNNTTC	2 cut(s)	110, 571
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	2 cut(s)	312, 413
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	272, 655
BfoI	RGCGCY	1 cut(s)	243
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
Bme1390I	CCNGG	2 cut(s)	7, 94
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	2 cut(s)	224, 338
BmrFI	CCNGG	2 cut(s)	7, 94
BmsI	GCATC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	634
BpuMI	CCSGG	1 cut(s)	7
BsaHI	GRCGYC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 590
Bse1I	ACTGG	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	94
BseLI	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 590
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	5, 191, 213
BshNI	GGYRCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	6, 66
BslFI	GGGAC	2 cut(s)	215, 566
BslI	CCNNNNNNNGG	4 cut(s)	43, 198, 199, 590
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	215, 566
BsnI	GGCC	3 cut(s)	5, 191, 213
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	54, 385
BspANI	GGCC	3 cut(s)	5, 191, 213
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	224, 338
BspT107I	GGYRCC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	477
BssMI	GATC	2 cut(s)	54, 385
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	44, 626
BstACI	GRCGYC	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	435
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	57, 388
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	54, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 263, 476, 651
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	5, 92
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	632
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	5, 191, 213
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 342, 470
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	3 cut(s)	10, 223, 277
CviAII	CATG	2 cut(s)	293, 457
CviQI	GTAC	3 cut(s)	10, 223, 277
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	2 cut(s)	56, 387
DpnII	GATC	2 cut(s)	54, 385
DrdI	GACNNNNNNGTC	2 cut(s)	68, 179
DseDI	GACNNNNNNGTC	2 cut(s)	68, 179
EaeI	YGGCCR	2 cut(s)	3, 211
Eam1104I	CTCTTC	2 cut(s)	44, 626
EarI	CTCTTC	2 cut(s)	44, 626
Eco47III	AGCGCT	1 cut(s)	241
Eco57I	CTGAAG	3 cut(s)	435, 525, 650
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	296, 460
FaiI	YATR	5 cut(s)	294, 432, 458, 528, 608
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	2 cut(s)	215, 566
FatI	CATG	2 cut(s)	292, 456
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	646
Fsp4HI	GCNGC	1 cut(s)	646
FspBI	CTAG	2 cut(s)	272, 655
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	646
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	5, 191, 213
HapII	CCGG	2 cut(s)	6, 66
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	296, 460
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	2 cut(s)	172, 313
HindII	GTYRAC	2 cut(s)	172, 313
HinfI	GANTC	5 cut(s)	62, 122, 347, 443, 514
HpaII	CCGG	2 cut(s)	6, 66
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	6 cut(s)	99, 132, 172, 266, 277, 313
Hpy188I	TCNGA	2 cut(s)	385, 630
Hpy188III	TCNNGA	2 cut(s)	52, 511
Hpy8I	GTNNAC	6 cut(s)	99, 132, 172, 266, 277, 313
Hpy99I	CGWCG	4 cut(s)	23, 26, 74, 173
HpyAV	CCTTC	3 cut(s)	433, 535, 545
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	266, 296, 470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 263, 476, 651
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	296, 460
HspAI	GCGC	1 cut(s)	240
KpnI	GGTACC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	54, 385
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	2 cut(s)	272, 655
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	2 cut(s)	283, 444
MalI	GATC	2 cut(s)	56, 387
MboI	GATC	2 cut(s)	54, 385
MboII	GAAGA	4 cut(s)	31, 380, 428, 643
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	4 cut(s)	56, 131, 452, 508
MmeI	TCCRAC	2 cut(s)	352, 375
MnlI	CCTC	5 cut(s)	47, 98, 128, 173, 327
Mox20I	TGGCCA	1 cut(s)	213
MroXI	GAANNNNTTC	2 cut(s)	110, 571
MscI	TGGCCA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	2 cut(s)	6, 66
MspR9I	CCNGG	2 cut(s)	7, 94
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	66, 263, 476, 651
NciI	CCSGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	54, 385
NlaIII	CATG	2 cut(s)	296, 460
NlaIV	GGNNCC	2 cut(s)	224, 338
NmuCI	GTSAC	2 cut(s)	283, 444
PaeR7I	CTCGAG	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	110, 571
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	647
PleI	GAGTC	4 cut(s)	56, 130, 451, 508
PpsI	GAGTC	4 cut(s)	56, 130, 451, 508
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	224, 338
PspPI	GGNCC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	3 cut(s)	11, 224, 278
RsaNI	GTAC	3 cut(s)	10, 223, 277
RseI	CAYNNNNRTG	1 cut(s)	359
SalI	GTCGAC	1 cut(s)	170
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	2 cut(s)	54, 385
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	4 cut(s)	56, 131, 452, 508
ScrFI	CCNGG	2 cut(s)	7, 94
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	119, 649
SmoI	CTYRAG	2 cut(s)	119, 649
Sse9I	AATT	1 cut(s)	329
SspMI	CTAG	2 cut(s)	272, 655
StyD4I	CCNGG	2 cut(s)	5, 92
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	120, 171
TasI	AATT	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	3 cut(s)	211, 349, 477
TseFI	GTSAC	2 cut(s)	283, 444
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	2 cut(s)	283, 444
TspDTI	ATGAA	2 cut(s)	445, 564
TspRI	CASTG	3 cut(s)	211, 349, 477
VneI	GTGCAC	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	2 cut(s)	110, 571
XspI	CTAG	2 cut(s)	272, 655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.