AT1G18860
WRKY Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015814
Physical Location & Seq
Forward (+)
6508797 .. 6511397
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18860.1

Sequence Viewer

Length: 1587 bp
ATGGAGAAGGACGATTTCTTGAGGAGTGGTCATGGAAGAGAAGAAAGCCATGATGAGATGAGAAAACTTGATTCATCTCACGATGATTCTCATCAAGAACACGACCATATTATAAGATCCAAGTTGGACTCAACTAAAGTCGAAATGGATGAGGCTAAAGAGGAAAATCGAAGACTAAAGTCATCATTGAGTAAAATCAAGAAAGATTTTGACATCCTTCAAACACAATACAACCAATTAATGGCCAAACATAACGAACCAACCAAGTTCCAATCAAAAGGGCATCATCAAGACAAAGGCGAAGATGAAGACAGAGAAAAAGTTAACGAACGTGAAGAACTTGTCTCGTTGAGCCTAGGCAGACGGTTAAATTCAGAGGTTCCAAGTGGTTCGAATAAAGAAGAAAAAAATAAAGATGTTGAAGAAGCGGAAGGTGACAGAAATTATGATGATAATGAAAAAAGCAGTATTCAAGGGTTGAGTATGGGGATTGAATACAAGGCTTTGAGTAATCCTAATGAGAAGTTAGAGATTGATCATAATCAAGAAACCATGTCGTTGGAGATTAGTAACAATAATAAGATCAGATCACAAAATAGTTTTGGGTTTAAGAATGATGGAGATGATCATGAAGATGAAGATGAGATTTTGCCTCAAAACCTTGTTAAGAAAACTAGGGTTTCGGTGAGATCAAGATGTGAGACACCAACGATGAACGACGGATGTCAATGGAGGAAATATGGCCAGAAAATAGCTAAAGGCAATCCATGTCCCCGAGCTTACTATCGTTGCACCATTGCAGCTTCTTGTCCAGTAAGAAAACAGGTGCAAAGATGTTCAGAAGATATGTCTATACTTATCTCAACGTACGAAGGAACACATAACCATCCACTTCCCATGTCAGCAACTGCCATGGCCTCTGCCACTTCCGCTGCCGCCTCCATGCTTCTCTCCGGCGCCTCCTCCTCCTCATCCGCCGCAGCTGATCTTCATGGCCTTAACTTCTCTCTTTCCGGCAACAACATCACTCCAAAACCTAAAACTCATTTCCTCCAATCCCCTTCTTCTTCTGGCCATCCGACCGTCACTCTCGACCTCACAACCTCCTCCTCGTCGCAGCAACCGTTCTTATCAATGCTCAATAGATTCAGCTCTCCTCCAAGTAATGTCTCACGATCTAATAGTTATCCTTCAACCAATCTCAACTTTTCAAACAACACCAACACATTGATGAATTGGGGTGGTGGTGGTAATCCCAGTGATCAATACCGTGCAGCTTACGGCAACATTAACACCCATCAGCAATCACCTTACCACAAAATCATTCAAACCCGAACCGCCGGGTCATCTTTCGATCCGTTTGGAAGATCATCTTCATCACATTCTCCACAAATAAATCTTGATCATATCGGAATCAAGAACATCATCAGTCACCAAGTGCCATCTTTACCGGCTGAAACAATCAAGGCAATCACGACAGATCCAAGTTTCCAATCGGCTTTGGCGACAGCTCTATCTTCCATCATGGGCGGCGATTTAAAGATTGATCACAATGTGACTAGAAATGAAGCTGAGAAGAGCCCTTAA

Protein Analysis

528

Amino Acids

58.6

Weight (kDa)

6.13

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 239 - 297 1.7e-24 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015814)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18860
fragaria_vesca FvH4_5g15340
malus_domestica MD06G1189100.v1.1 MD14G1196100.v1.1
prunus_persica Prupe.5G187800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0180741
rosa_laevigata RLG00000005236
rosa_multiflora Rmu_sc0007457.1_g000017
rosa_roxburghii Rroxscaffold_3G00272600
rosa_rugosa Rorug06G0435400
rosa_samantha Rh7AG037000 Rh7BG036800 Rh7CG038500 Rh7DG037000
rosa_wichuraiana Rw7G003060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 956
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 7 cut(s) 428, 930, 936, 975, 978, 1338, 1530
AclWI GGATC 3 cut(s) 111, 1349, 1475
AcoI YGGCCR 3 cut(s) 243, 742, 1072
AcsI RAATTY 1 cut(s) 370
AcyI GRCGYC 1 cut(s) 957
AdeI CACNNNGTG 2 cut(s) 1438, 1555
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 7 cut(s) 221, 422, 473, 494, 1194, 1212, 1328
AluBI AGCT 8 cut(s) 755, 779, 803, 983, 1152, 1277, 1511, 1571
AluI AGCT 8 cut(s) 755, 779, 803, 983, 1152, 1277, 1511, 1571
Alw26I GTCTC 3 cut(s) 349, 695, 1174
AlwI GGATC 3 cut(s) 111, 1349, 1475
AlwNI CAGNNNCTG 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 5 cut(s) 243, 742, 915, 994, 1072
ApeKI GCWGC 5 cut(s) 800, 932, 980, 1117, 1274
ApoI RAATTY 1 cut(s) 370
AseI ATTAAT 1 cut(s) 239
AspA2I CCTAGG 1 cut(s) 355
AspLEI GCGC 1 cut(s) 959
AsuC2I CCSGG 1 cut(s) 1342
AsuHPI GGTGA 4 cut(s) 446, 697, 1299, 1424
AsuII TTCGAA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 774
AvrII CCTAGG 1 cut(s) 355
BalI TGGCCA 3 cut(s) 245, 744, 1074
BanI GGYRCC 1 cut(s) 956
BanII GRGCYC 1 cut(s) 1583
BbsI GAAGAC 2 cut(s) 178, 315
BbvI GCAGC 5 cut(s) 812, 919, 992, 1129, 1286
BccI CCATC 6 cut(s) 611, 894, 1083, 1305, 1450, 1529
BceAI ACGGC 1 cut(s) 1297
BclI TGATCA 5 cut(s) 535, 625, 1261, 1402, 1546
BcnI CCSGG 1 cut(s) 1342
BcoDI GTCTC 3 cut(s) 349, 695, 1174
BfaI CTAG 3 cut(s) 356, 675, 1560
BfoI RGCGCY 1 cut(s) 960
BisI GCNGC 8 cut(s) 801, 933, 936, 978, 981, 1118, 1275, 1531
BlnI CCTAGG 1 cut(s) 355
BlsI GCNGC 8 cut(s) 802, 934, 937, 979, 982, 1119, 1276, 1532
Bme1390I CCNGG 1 cut(s) 1342
BmeT110I CYCGRG 1 cut(s) 774
BmiI GGNNCC 2 cut(s) 381, 958
BmrFI CCNGG 1 cut(s) 1342
BmrI ACTGGG 1 cut(s) 1251
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 1251
BoxI GACNNNNGTC 2 cut(s) 178, 723
BpiI GAAGAC 2 cut(s) 178, 315
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 1342
BsaBI GATNNNNATC 2 cut(s) 90, 540
BsaHI GRCGYC 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 355, 912
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse118I RCCGGY 1 cut(s) 1450
Bse1I ACTGG 2 cut(s) 812, 1257
Bse3DI GCAATG 1 cut(s) 795
Bse8I GATNNNNATC 2 cut(s) 90, 540
BseDI CCNNGG 2 cut(s) 355, 912
BseGI GGATG 6 cut(s) 154, 213, 728, 886, 971, 1075
BseJI GATNNNNATC 2 cut(s) 90, 540
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 795
BseMII CTCAG 1 cut(s) 1563
BseNI ACTGG 2 cut(s) 812, 1257
BseRI GAGGAG 7 cut(s) 37, 952, 955, 958, 1096, 1099, 1146
BseXI GCAGC 5 cut(s) 812, 919, 992, 1129, 1286
BsgI GTGCAG 1 cut(s) 1293
Bsh1285I CGRYCG 1 cut(s) 1083
BshFI GGCC 5 cut(s) 245, 744, 917, 996, 1074
BshNI GGYRCC 1 cut(s) 956
BsiEI CGRYCG 1 cut(s) 1083
BsiHKCI CYCGRG 1 cut(s) 774
BsiSI CCGG 4 cut(s) 954, 1014, 1341, 1451
BsiWI CGTACG 1 cut(s) 867
BslFI GGGAC 1 cut(s) 756
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 349, 695, 1174
BsmFI GGGAC 1 cut(s) 756
BsnI GGCC 5 cut(s) 245, 744, 917, 996, 1074
BsoBI CYCGRG 1 cut(s) 774
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 1583
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 7 cut(s) 428, 930, 936, 975, 978, 1338, 1530
BspANI GGCC 5 cut(s) 245, 744, 917, 996, 1074
BspCNI CTCAG 1 cut(s) 1564
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 2 cut(s) 381, 958
BspPI GGATC 3 cut(s) 111, 1349, 1475
BspQI GCTCTTC 1 cut(s) 1571
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 956
BsrDI GCAATG 1 cut(s) 795
BsrFI RCCGGY 1 cut(s) 1450
BsrI ACTGG 2 cut(s) 812, 1257
BssAI RCCGGY 1 cut(s) 1450
BssECI CCNNGG 2 cut(s) 355, 912
BssNI GRCGYC 1 cut(s) 957
BssT1I CCWWGG 2 cut(s) 355, 912
Bst4CI ACNGT 4 cut(s) 366, 1084, 1125, 1271
Bst6I CTCTTC 2 cut(s) 31, 1571
BstACI GRCGYC 1 cut(s) 957
BstBI TTCGAA 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 1572
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 6 cut(s) 154, 213, 728, 886, 971, 1075
BstH2I RGCGCY 1 cut(s) 960
BstHHI GCGC 1 cut(s) 959
BstMAI GTCTC 3 cut(s) 349, 695, 1174
BstMCI CGRYCG 1 cut(s) 1083
BstMWI GCNNNNNNNGC 1 cut(s) 929
BstPAI GACNNNNGTC 2 cut(s) 178, 723
BstSCI CCNGG 1 cut(s) 1340
BstV1I GCAGC 5 cut(s) 812, 919, 992, 1129, 1286
BstV2I GAAGAC 2 cut(s) 178, 315
BstX2I RGATCY 2 cut(s) 116, 1480
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 2 cut(s) 116, 1480
BsuRI GGCC 5 cut(s) 245, 744, 917, 996, 1074
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 6 cut(s) 154, 213, 728, 886, 971, 1075
BtsIMutI CAGTG 1 cut(s) 1264
CaiI CAGNNNCTG 1 cut(s) 908
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 959
Cfr10I RCCGGY 1 cut(s) 1450
Csp6I GTAC 1 cut(s) 868
CviQI GTAC 1 cut(s) 868
DdeI CTNAG 1 cut(s) 1572
DinI GGCGCC 1 cut(s) 958
DraI TTTAAA 1 cut(s) 1539
DraIII CACNNNGTG 2 cut(s) 1438, 1555
EaeI YGGCCR 3 cut(s) 243, 742, 1072
Eam1104I CTCTTC 2 cut(s) 31, 1571
EarI CTCTTC 2 cut(s) 31, 1571
EciI GGCGGA 1 cut(s) 964
Eco130I CCWWGG 2 cut(s) 355, 912
Eco24I GRGCYC 1 cut(s) 1583
Eco88I CYCGRG 1 cut(s) 774
EcoT14I CCWWGG 2 cut(s) 355, 912
EcoT38I GRGCYC 1 cut(s) 1583
EgeI GGCGCC 1 cut(s) 958
EheI GGCGCC 1 cut(s) 958
ErhI CCWWGG 2 cut(s) 355, 912
FalI AAGNNNNNCTT 2 cut(s) 1357, 1389
FaqI GGGAC 1 cut(s) 756
FbaI TGATCA 5 cut(s) 535, 625, 1261, 1402, 1546
Fnu4HI GCNGC 8 cut(s) 801, 933, 936, 978, 981, 1118, 1275, 1531
FokI GGATG 6 cut(s) 161, 200, 735, 873, 958, 1062
FriOI GRGCYC 1 cut(s) 1583
Fsp4HI GCNGC 8 cut(s) 801, 933, 936, 978, 981, 1118, 1275, 1531
FspBI CTAG 3 cut(s) 356, 675, 1560
GlaI GCGC 1 cut(s) 958
GluI GCNGC 8 cut(s) 801, 933, 936, 978, 981, 1118, 1275, 1531
HaeII RGCGCY 1 cut(s) 960
HaeIII GGCC 5 cut(s) 245, 744, 917, 996, 1074
HapII CCGG 4 cut(s) 954, 1014, 1341, 1451
HhaI GCGC 1 cut(s) 959
Hin1I GRCGYC 1 cut(s) 957
Hin6I GCGC 1 cut(s) 957
HinP1I GCGC 1 cut(s) 957
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 5 cut(s) 71, 86, 128, 1146, 1413
HpaI GTTAAC 1 cut(s) 325
HpaII CCGG 4 cut(s) 954, 1014, 1341, 1451
HphI GGTGA 4 cut(s) 446, 697, 1299, 1424
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 5 cut(s) 376, 587, 841, 1080, 1412
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 722, 1117
HpyAV CCTTC 5 cut(s) 227, 425, 866, 1071, 1200
HpyCH4III ACNGT 4 cut(s) 366, 1084, 1125, 1271
HpyCH4IV ACGT 2 cut(s) 331, 866
HpyCH4V TGCA 4 cut(s) 792, 800, 829, 1274
HpyF10VI GCNNNNNNNGC 1 cut(s) 929
HpyF3I CTNAG 1 cut(s) 1572
HpySE526I ACGT 2 cut(s) 331, 866
Hsp92I GRCGYC 1 cut(s) 957
HspAI GCGC 1 cut(s) 957
KasI GGCGCC 1 cut(s) 956
Ksp22I TGATCA 5 cut(s) 535, 625, 1261, 1402, 1546
KspAI GTTAAC 1 cut(s) 325
LguI GCTCTTC 1 cut(s) 1571
LpnPI CCDG 9 cut(s) 758, 809, 825, 967, 1027, 1056, 1270, 1354, 1464
Lsp1109I GCAGC 5 cut(s) 812, 919, 992, 1129, 1286
LweI GCATC 1 cut(s) 292
MaeI CTAG 3 cut(s) 356, 675, 1560
MaeII ACGT 2 cut(s) 331, 866
MaeIII GTNAC 5 cut(s) 434, 569, 1084, 1430, 1555
MflI RGATCY 2 cut(s) 116, 1480
MhlI GDGCHC 1 cut(s) 1583
MlsI TGGCCA 3 cut(s) 245, 744, 1074
MluCI AATT 4 cut(s) 236, 370, 442, 1234
MluNI TGGCCA 3 cut(s) 245, 744, 1074
Mly113I GGCGCC 1 cut(s) 957
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 3 cut(s) 105, 540, 1103
Mox20I TGGCCA 3 cut(s) 245, 744, 1074
MscI TGGCCA 3 cut(s) 245, 744, 1074
MseI TTAA 9 cut(s) 239, 324, 368, 609, 666, 999, 1290, 1538, 1585
MslI CAYNNNNRTG 2 cut(s) 633, 1229
Msp20I TGGCCA 3 cut(s) 245, 744, 1074
MspA1I CMGCKG 2 cut(s) 932, 983
MspI CCGG 4 cut(s) 954, 1014, 1341, 1451
MspR9I CCNGG 1 cut(s) 1342
MwoI GCNNNNNNNGC 1 cut(s) 929
NarI GGCGCC 1 cut(s) 957
NciI CCSGG 1 cut(s) 1342
NcoI CCATGG 1 cut(s) 912
NlaIV GGNNCC 2 cut(s) 381, 958
NmuCI GTSAC 4 cut(s) 434, 1084, 1430, 1555
NspV TTCGAA 1 cut(s) 392
PagI TCATGA 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 1571
PcsI WCGNNNNNNNCGW 2 cut(s) 1121, 1502
PfeI GAWTC 4 cut(s) 71, 86, 1146, 1413
Pfl23II CGTACG 1 cut(s) 867
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 8 cut(s) 802, 934, 937, 979, 982, 1119, 1276, 1532
PleI GAGTC 1 cut(s) 122
PluTI GGCGCC 1 cut(s) 960
PpsI GAGTC 1 cut(s) 122
PshAI GACNNNNGTC 2 cut(s) 178, 723
PshBI ATTAAT 1 cut(s) 239
PsiI TTATAA 1 cut(s) 113
PspLI CGTACG 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 381, 958
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 2 cut(s) 116, 1480
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
RseI CAYNNNNRTG 2 cut(s) 633, 1229
SapI GCTCTTC 1 cut(s) 1571
SaqAI TTAA 9 cut(s) 239, 324, 368, 609, 666, 999, 1290, 1538, 1585
SatI GCNGC 8 cut(s) 801, 933, 936, 978, 981, 1118, 1275, 1531
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 1342
SduI GDGCHC 1 cut(s) 1583
SfaNI GCATC 1 cut(s) 292
SfoI GGCGCC 1 cut(s) 958
SfuI TTCGAA 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 633, 1229
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 4 cut(s) 236, 370, 442, 1234
SsiI CCGC 7 cut(s) 428, 930, 936, 975, 978, 1338, 1530
SspDI GGCGCC 1 cut(s) 956
SspMI CTAG 3 cut(s) 356, 675, 1560
StyD4I CCNGG 1 cut(s) 1340
StyI CCWWGG 2 cut(s) 355, 912
TaaI ACNGT 4 cut(s) 366, 1084, 1125, 1271
TaiI ACGT 2 cut(s) 334, 869
TaqI TCGA 5 cut(s) 141, 169, 392, 1092, 1353
TasI AATT 4 cut(s) 236, 370, 442, 1234
TauI GCSGC 3 cut(s) 938, 980, 1533
TfiI GAWTC 4 cut(s) 71, 86, 1146, 1413
Tru1I TTAA 9 cut(s) 239, 324, 368, 609, 666, 999, 1290, 1538, 1585
Tru9I TTAA 9 cut(s) 239, 324, 368, 609, 666, 999, 1290, 1538, 1585
TscAI CASTG 1 cut(s) 1264
TseFI GTSAC 4 cut(s) 434, 1084, 1430, 1555
TseI GCWGC 5 cut(s) 800, 932, 980, 1117, 1274
Tsp45I GTSAC 4 cut(s) 434, 1084, 1430, 1555
TspGWI ACGGA 2 cut(s) 735, 1347
TspRI CASTG 1 cut(s) 1264
Van91I CCANNNNNTGG 1 cut(s) 241
VspI ATTAAT 1 cut(s) 239
XapI RAATTY 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 355
XspI CTAG 3 cut(s) 356, 675, 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.