Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015762

Physical Location & Seq

Genomic Coordinates Reverse (-)

57007081 .. 57008348

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0435400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCTCTTCCCCTTGATTTGCAGGACTTCCTTCTCCGCGCTCGAGTCTTGAAGCTGTATAGACAAGCACTGAGGGTTACTCGAAGAGCCCCTCTTGAGGCTAGAGGTGAACTAAGAACGACGATTAGACAAGAAATGGAGAATAGCCGAGACTGCAATGACAGGCAGAAGATTCGTTATTTGCTTAGCGAAGGATTAGAGAGGTTAAAACGTCTGGATGAGATGCTTGACATGCAAGGCCATCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko00480 map00480

Pfam Domains

Protein Families

Rsm22

Protein Analysis

83

Amino Acids

9.95

Weight (kDa)

9.5

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_LYR	PF05347	15 - 70	2.5e-14	Complex 1 protein (LYR family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0205551 RchiOBHm_Chr7g0205571
rosa_multiflora	Rmu_sc0000795.1_g000089
rosa_roxburghii	Rroxscaffold_4G00311150
rosa_rugosa	Rorug04G0088200 Rorug05G0210300 Rorug06G0435300 Rorug06G0435400 Rorug07G0211400 Rorug07G0211500
rosa_samantha	Rh2BG034800 Rh4BG189200 Rh5BG106900 Rh6BG362700 Rh7AG222700 Rh7DG229300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	91
BccI	CCATC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	102
BlpI	GCTNAGC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	64, 96
Bpu1102I	GCTNAGC	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	223, 241
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	62, 237
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp1720I	GCTNAGC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	63, 238
BspFNI	CGCG	1 cut(s)	39
BspQI	GCTCTTC	2 cut(s)	12, 79
BsrDI	GCAATG	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	12, 79
BstDEI	CTNAG	4 cut(s)	71, 113, 185, 246
BstF5I	GGATG	2 cut(s)	223, 241
BstFNI	CGCG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	41
BstMAI	GTCTC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 232
BstNSI	RCATGY	1 cut(s)	235
BstUI	CGCG	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	223, 241
BtsIMutI	CAGTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	41
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	6 cut(s)	5, 55, 89, 101, 147, 240
CviKI_1	RGCY	6 cut(s)	5, 55, 89, 101, 147, 240
DdeI	CTNAG	4 cut(s)	71, 113, 185, 246
Eam1104I	CTCTTC	2 cut(s)	12, 79
EarI	CTCTTC	2 cut(s)	12, 79
Eco24I	GRGCYC	1 cut(s)	91
Eco88I	CYCGRG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	1 cut(s)	235
FaiI	YATR	2 cut(s)	60, 233
FatI	CATG	1 cut(s)	231
FokI	GGATG	2 cut(s)	228, 230
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HinfI	GANTC	2 cut(s)	45, 172
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	4 cut(s)	49, 95, 215, 245
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	41, 185
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	22, 156, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 232
HpyF3I	CTNAG	4 cut(s)	71, 113, 185, 246
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	39
LguI	GCTCTTC	2 cut(s)	12, 79
LpnPI	CCDG	3 cut(s)	8, 148, 200
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	96, 181
MhlI	GDGCHC	1 cut(s)	91
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	66, 91, 98, 102, 195
MseI	TTAA	1 cut(s)	206
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	153, 232
NlaIII	CATG	1 cut(s)	235
NmeAIII	GCCGAG	1 cut(s)	173
NspI	RCATGY	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	42
PciSI	GCTCTTC	2 cut(s)	12, 79
PfeI	GAWTC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspXI	VCTCGAGB	1 cut(s)	42
SapI	GCTCTTC	2 cut(s)	12, 79
SaqAI	TTAA	1 cut(s)	206
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	4 cut(s)	57, 109, 206, 214
SfaNI	GCATC	1 cut(s)	213
Sfr274I	CTCGAG	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	42, 95
SmoI	CTYRAG	2 cut(s)	42, 95
SsiI	CCGC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	43, 82
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	75
TspRI	CASTG	1 cut(s)	75
XceI	RCATGY	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	42
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.